Cucsat.G848.T16 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G848.T16
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUPF0415 protein C7orf25 homolog
Locationctg1: 2900713 .. 2904176 (+)
RNA-Seq ExpressionCucsat.G848.T16
SyntenyCucsat.G848.T16
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGAAGTTATATATATAGTTTTCTTGTCAATTCTTCTTCCCAAGGCATTAGGCATTTTGATGAAATTTGCCATTTGGGATATTTAAATGGAGAGAGTTTATCACCACTAAACCCCAGCAATGGCAGAACCAAATACAGTAGAATTGGCCAAGCAAAGATGCAAAGCGATTATGGACATAATCCAAACCCTACCTTCTTCCACCAACATCTCCGTTTCATGTACCCAAACTCTCCACAAATTGGCTCTTCGCGAGCTCAATTTCCTCTCTCGTTGCTCCTCCTCGTCTTCCGCCCCTCTCAGGTTCCGCCATTTTCTTGAATCAAAATATTTACACTTTTCAATCTTCTCTATCTTTCCTCATATTCATCAATGATTTCCATACAGCTTGAATATTGGGCACCTTGAAGCTATTGTTCACATTCTTCAACACCCTTCCGTCACTGGAATTTCACGTGTTTGTAAGCCGATTCCATCTTCCTCCTCTTCGCAAGCTGTTTATGTTGATATAATTTGCACTTTGAATAGGAATCCTGTGTGGGTTATTGTTTCCGATAGAAAACCTAGGTATATTTCTTGGTATAAGGGCCACAGAAGTAAGGGCTTGAAATCTCGACTTGAGGAAGTGATTGATGCGGCTCGCTCTTTGCACGCCTTAGAACCTTGCTCGATCATTTTGTTTTTTTCGCATGGGCTTGATCAGTTTATTCTGGAAAGGCTCCGGGATGAATTCAAAGCCACTGAGTTTCATTTCAATTTCTCGGATTTTGATTTTGCTTTCTCTGAGATTGATGGTGATTGGATTAATGTGCTTCCAAGAAGCTATGAAGAAGCTTGTGTTCTTGAAATAAAAGTTAATGATAGGAATTGTGGGGTTACGAGTTCAAATTATAACAGTAAAGTATGTTCTAGTGGTGTGGATGAGCCGGAGATTTTGAACAACAATACCGAGATAGATTTTGGGGATTCTTTCTGCTCTGTTGTTATGGCAATGAAGCCTAATCCTATGAACGGTATCGAAGATATGGAATCCGCAAATTTTGAAAAATTATTGGGTGGTGATAGTGATTTAATAAATTTTGATACCACGGCGTTGATTGCATTAGTGTCCGGCATTAGTAATGGCTGTGCTGCTAAATTATTGTCTATCCCAGAGAATGAATTGAGACAGAAGTACAAGAGTAACTATGATTTTGTTATTGGTCAGGTGAATTTTTGTTTGCAGATGAGCATTATCTTCCACTATCTTCTATTACTTTTTAGCCACTATTTTACTTACAAGTTAGGTTCGCGTAAATGTATAATCTCCGATTGTTAATTTAAAGCAGGAGATTATGCAGAATATATAATATCCCACTTGAATGAAAAAGATTGTAACTGAAATAAGAACTTATTTTCATTTTCGCTGTAAGTTTTGCACTCTAGTCATTACTAGTTAAAAACTAGTGAGTTATCTTGAACTTGCATGTAGACCACATTATGTTCGAGTTGAGGATGTTCCTTATTGCCTTGGCTGGATTGTTACTCCACTGAACTTATTTTGCTTAGTTGCATTACTGGACTATATCCCAAAATAATCCCTCGTGGAGTTACTCAAGCATTCCTTTTACTAGTTACCTTTTTTATTCGTTGTTGGCTTTTTTGTTAAATGGTCTTTTTGTTTACTGTCAAGTCATCTGCTGAAACAATTTACAAATTTTTCCTCTCATATTGTAACCGATATCTCTCTTCTTGTCCAGCCAGATAAGATTGGTATACGGTAAGCCTTGGTGGAAGTTTTTGTTTGAATTAGATTGTGAGGAAACATCCAAGGCTCAAATACTTTCTATTGAGATTTTATTTACCATTGCTTTTTATCATAACAAATGCTCTTTTTGACTTATTAGAGTTGAAAATTAAGGTTGATTTACCAATCAATTGTTTGGTTGATTTCTTTGCTAGTGTTATATGGTCTGAACTTGGATTTCCTAGTATTATTATTACTTTTGCTTGTAGCCAATGTGATTCTGTCTCTGAGCTCTCTCGATCTTCTGCTAGGCAATGTCAGAAATTAAGAAGCCTATTCTTGTGGAGCTGAGTTCTCTATTGTCTGGAAAAAGAGGAATAATATGCCAGAGTGCTCACTCTGAGTTCAAGGAACTTATAACAATGTGTGGAGGGCCGAATGAGAAGTCCAGAGCAAACCACTTACTAAAGCACATCATGTGAGTCAATTAGAACTAGGTTTTGTTGTTATTTCATTTTCTTACTTTGATCCTTGATTCACAATCATTTGAAACATGAAAAATAATTTGGATTTAGCACTTTTAGTTTCATAAATCTAAAATTGTAACAATATTTTGGGTCCGTCCAGAATTACGTGTTGGAGTTATTTGGAAGCCTCCAAATATTTGCAAAGAATCGAATAATTTGTCCTTTTAATACTCTAGATGCCAAGTGCAAAATCCTAGCATGCCACCATGTTTATGGATGGAGAGACCTTTCAGGCTTTTCAACATGATCTCATCCCACCAAGTGACTCCCACCTTAGTACCTTCAACACCCTATGAAAGTTTTGCATTTCTTTCTCTGAAATCTAGGCCATTTTGGTATGTATTTGAAAGTAAAACATGAAGTAGATAGAAATGCCTTGGTATTCGTTCACCATATATTGTAGCCACCTATTGAGATTTAATATCCTACAAGATAAAAAATAATAAGAGCCATGTAAATAATAATATCCTACTATAGCTTAGCCACCTACTTAAGATTTAATATCCCACGAGATACCTTGTCAATTAAATGTATTAGATTCGAGTGATACACCATGAGAATAATTGTGGGTGTGCCATGGGGAATAGAAAAGGTAGGTAGAAATAGACTTTTTCAGCTTAATCAGAAGTTCAATTTGCTTATGTAGGTTTGTGACCTTGTGCTATCAATACTTTCAGTTTCAGTTTTTCTGTCCTTGCAACCACATGGAGGATGTTATGGATAAGTTTATCATCTAGGTAAATGTCAATACATTAGTGCACTGATTGGTGTTGACAATGAAACAGGGTTGTGCTGGACATGGTATCAAAACGCATGACATGCCTCCCGACCACGAGAAAGTTAGCTTTGAAGAACAAGGTTGTGTTCGGTACTGGTGACTACTGGAATGCCCCGACCTTAACTGCTAACATGTCATTTGTTCGAGCAGTATCGCAGACTGGGATGTCCCTTTTTACCTTTGAGCATAGGCCACGAGCTTTAACCGGTGATTAGTTGATGCGCACTTTTGATTTAAATGCGATATCTTTGTTCTGTTAGTTCTGTTAGAAAAAGGAATGGTGGTAGGGAGATTTGAATTTTCAATTTTGTTTTTTCTTTCAGAATAAAATGTAGTTAGTTAAAGACAATTTCTCCCTTGTTGTAGAATGATAAATTATTGGCCATATTTTGGTTGGTATATAAATTAAATCCGTGCATTGCATGCAGGAAAAG

Coding sequence (CDS)

GGAAGTTATATATATAGTTTTCTTGTCAATTCTTCTTCCCAAGGCATTAGGCATTTTGATGAAATTTGCCATTTGGGATATTTAAATGGAGAGAGTTTATCACCACTAAACCCCAGCAATGGCAGAACCAAATACAGTAGAATTGGCCAAGCAAAGATGCAAAGCGATTATGGACATAATCCAAACCCTACCTTCTTCCACCAACATCTCCGTTTCATGTACCCAAACTCTCCACAAATTGGCTCTTCGCGAGCTCAATTTCCTCTCTCGTTGCTCCTCCTCGTCTTCCGCCCCTCTCAGCTTGAATATTGGGCACCTTGA

Protein sequence

GSYIYSFLVNSSSQGIRHFDEICHLGYLNGESLSPLNPSNGRTKYSRIGQAKMQSDYGHNPNPTFFHQHLRFMYPNSPQIGSSRAQFPLSLLLLVFRPSQLEYWAP
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G848.T16 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G848.T16 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G848.T16 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G848.T16 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G848Cucsat.G848gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G848.T16.E1Cucsat.G848.T16.E1exon
Cucsat.G848.T16.E2Cucsat.G848.T16.E2exon
Cucsat.G848.T16.E3Cucsat.G848.T16.E3exon
Cucsat.G848.T16.E4Cucsat.G848.T16.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G848.T16.C1Cucsat.G848.T16.C1CDS
Cucsat.G848.T16.C2Cucsat.G848.T16.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G848.T16Cucsat.G848.T16-proteinpolypeptide