Cucsat.G7482.T11 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G7482.T11
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ubiquinone biosynthesis protein
Location	ctg1528: 3238583 .. 3241025 (+)
RNA-Seq Expression	Cucsat.G7482.T11
Synteny	Cucsat.G7482.T11

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCATCACAGGCCATCCATTCCCCCAAATATACATTCTATAACCCCACCAATCCTCTTTTACCCTTTTGGAGTCTCTCCGGCGCCCATGGCTCTCTCCATTTCTTCCACTGCCACTGCGCTCTCCTCCTTCCCAATCAGGTCAACCCTATTTCACATTTTTTTCATTGGTTTCTCCCAATTTCTCATTCTCCTTTCTTCTATTTGAATACAGAGACTCCTATCACAGATCAAATTTTCCGGGAAATTTCCCAAATCATAAGCTCCGTCGAGATTACTCCGATTTGAAAGCGGCGAAATCCGGCGTGTCTAGCGTCTGTGAACCGCTCCCTCCTGATAGACCCCTTTGGTTTCCCGGCAGCAGCCCGCCGGAGTGGCTCGACGGCAGGTTAATTAATTTATAGCTTATTTCATTCGTTTTTTTTTCTTCTTCTTTGATTCGTAGAATTGGAGATTTATAGCTTAAACAGTGGGTTGGCCTCTGAACTTTAGCAACAGCAACAATTTAGTACATAAATTAACACTTTTAAATTTGGTGTTCAACAATTTTTTTGTCTTTCATTTTTCAAACTTGTAATGATTTAGTTCGATTGTGGAAAAGTTCTATCAAAATTTATTATTCTTCTAAGCTCTTCAACTTTCAATTTTGTTGTATTAGATTAGTTTACGAACTTTAGTAGATGTGCTTTTAATTTTATTACAATTTAATCTTAAAACTTTGCATTTTACAAAACTATAGAGTCTCCATTATCGAAATATTATACAGTCAAGTTTAGCAATTAAATTGTTACAAAAATGAAAGTTCAAAAACTAAATCATTACAAAAGTTTGGAAAAAGTTTATAAACATTCTTCTCCACCTACTAAAAGTGATTATTTAACGTTTGTTTGTTCCTTCGTAGCCTTCCCGGCGATTTTGGCTTCGATCCGCTTGGATTGGGTATGCTACTGTCCCTTTTTTTGTTTGATTCAAATTTACATTTTGAAAAGTAATTGGTCGTGAGAAAACTAACTTAACAACAAAGAAGATTTGGGCTATTACTATTACTATTTCTTCTTATTTTTTCTCTTTCTGATAAAAGAAATTAAGAAAGGTGTGTTTTACGATTACAATACTATTTTTGGTTTTCACCTCGGAATAGAAACGTTCTTTTTGAGATTATTAGGCAGGAAATATGGTAGTAGGAGTGGGAATGAAAAGTTAGGAGTTTGTTGGAGAATTAAAAACAATTATTACCAAACACAATTGGAATTAGAATTGTCAATCAAACACATTTTTGTAGTGAATATGAAAATACAGACATCAAAGTGATAATTTGAAATGGGCATGTCAGGTTCGGATCCAGAGACACTAAAATGGTTCGCACAAGCAGAACTAATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGTACCATTATCATTCCTACCTATTATTTTTTTTATCTTCATTGCTATATTTGAAGTAAATAAATAAATACTATGATAAAAAAGAGCACAAATCGTACACTTTTAAAAATTCATAACCAAAAAATAAAATTGTTGTCCAATGGGTCAATCTATTATTTAGTCCATTCGCAAATTGATCTCTTAAATAAGTTTTTAATTTTGTGTTCGATAAAGGTTCATGGGTGGAATATATTATTTTCGTGTTAATTTACTTTTATTTTTTGTTTGCAGGCATTTAGTTCTGGTTCGGGTTGAAATTGAATCCTTCATTTTGGTTTAGTTGAGATGGTGAAGTGTGTACATAAAAAGCAGAGAGATGAGAAGATTTGGGATGGTTTACTATATAATTGTCTACGTATTATTCAAACTCTTTGATGCTTGACTCCTCCTCACTAGTTAATATTAATTTCAAAATTATCTTAATTTATTGAATCTTAAAAATTATTTTGAAATCAGATTGAACCAAACACAAGCAAAAGAATATTTTGGCTCAATTATCTAATGGTAGCTTAGATTCAACTTTAACAAACAACTAATTTGTACGATGTTGTCTGCTT

Coding sequence (CDS)

ATGCACGCAAGATGGGCAATGCTAGCCGTAGCAGGAATCCTTCTACCGGAATGGTTCGAGAGCTTAGGACTCATACAAAACTTCTCATGGTACGACGCTGGATCTCGAGAATATTTCGCAGATCCGACGACATTGCTGGTGGCGCAATTGGCGTTGATGGGGTGGGTGGAGGGGAGGCGATGGGCAGACTTGGTGAACCCGGGGAGCGTGGACGTTGACTTGAAGCTGCCCCACAAAAAGAAAGCAAAGGCAGATGTGGGCTACCCGGGGGGGTTCTGGTTTGACCCGATGATGTGGGGCAGGGGCTCGCCGGAGCCGGTGATGGTGCTGAGGACTAAAGAGATTAAGAATGGGCGGTTAGCTATGTTGGCCTTTGTTGGACTGTGGTTTCAAGCTATTTATACTGGCCAAGGACCCCTTGAGAATCTCGCTGCACACGTGGCAGACCCCGGCCATTGCAATATCTTTTCGGCATTTAGTTCTGGTTCGGGTTGA

Protein sequence

MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG

Homology

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.4e-74
Identity = 123/161 (76.40%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           +H+RWAMLAV GI++PE  E LG I+NFSWYDAGSREYFAD TTL VAQ+ LMGW EGRR
Sbjct: 109 IHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADL+ PGSVD++ K PHK   K DVGYPGG WFD MMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 169 WADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRL 228

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSS 162
           AMLAF+G  FQA YT Q P+ENL AH+ADPGHCN+FSAF+S
Sbjct: 229 AMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.0e-58
Identity = 97/160 (60.62%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           +H RWAML  AGI +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRR
Sbjct: 96  VHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDKTTLFVVELILIGWAEGRR 155

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD++ PGSV+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRL
Sbjct: 156 WADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRL 215

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 161
           AMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AF+
Sbjct: 216 AMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 255

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.3e-58
Identity = 97/160 (60.62%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           +H+RWAML  AGI +PE+   +G++   SWY AG +EYF D TTL V +L L+GW EGRR
Sbjct: 109 VHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRR 168

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD++ PG V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRL
Sbjct: 169 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 228

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 161
           AMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 229 AMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.9e-58
Identity = 96/160 (60.00%), Postives = 116/160 (72.50%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           +H RWAML  AGI +PE    +G++   SWY AG +EYF D TTL + +L L+GW EGRR
Sbjct: 109 VHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRR 168

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD++ PG V+ D   P+ K    DVGYPGG WFDP+ WG GSP  +  LRTKEIKNGRL
Sbjct: 169 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 228

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 161
           AMLA +G WFQ IYTG GP++NL AH+ADPGH  IF+AFS
Sbjct: 229 AMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 75/160 (46.88%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           ++ RWAML VAG+LLPE F  +G+I    WYDAG  +YFA  +TL V +  L  +VE RR
Sbjct: 98  VNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR 157

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           W D+ NPGSV+ D         K +VGYPGG  F+P+ +      P    + KE+ NGRL
Sbjct: 158 WQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRL 217

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS 161
           AMLAF+G   Q   TG+GP ENL  H++DP H  I   F+
Sbjct: 218 AMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Cucsat.G7482.T11 vs. NCBI nr
Match: XP_004144043.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus] >KGN66318.1 hypothetical protein Csa_007477 [Cucumis sativus])

HSP 1 Score: 354 bits (908), Expect = 6.18e-122
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR
Sbjct: 104 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 163

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 164 WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 223

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 164
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 224 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of Cucsat.G7482.T11 vs. NCBI nr
Match: XP_008450947.1 (PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis melo] >KAA0055760.1 photosystem I chlorophyll a/b-binding protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 351 bits (901), Expect = 6.72e-121
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR
Sbjct: 102 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 161

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADLVNPGSVDVDLKLPHKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 162 WADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 221

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 164
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 222 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of Cucsat.G7482.T11 vs. NCBI nr
Match: XP_022929243.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 341 bits (874), Expect = 9.99e-117
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRR
Sbjct: 106 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRR 165

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD+VNPGSVDVDLKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 166 WADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 225

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 162
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 226 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 267

[Close]

BLAST of Cucsat.G7482.T11 vs. NCBI nr
Match: XP_022929235.1 (photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 341 bits (874), Expect = 1.03e-116
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRR
Sbjct: 107 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRR 166

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD+VNPGSVDVDLKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 167 WADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 226

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 162
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 227 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 268

[Close]

BLAST of Cucsat.G7482.T11 vs. NCBI nr
Match: KAG7021985.1 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341 bits (874), Expect = 1.03e-116
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRR
Sbjct: 107 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRR 166

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD+VNPGSVDVDLKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 167 WADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 226

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 162
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 227 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 268

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL
Match: A0A0A0LX05 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_1G597160 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 2.99e-122
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR
Sbjct: 104 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 163

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 164 WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 223

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 164
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG
Sbjct: 224 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 267

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL
Match: A0A5A7UKU4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold181G001460 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 3.25e-121
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR
Sbjct: 102 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 161

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADLVNPGSVDVDLKLPHKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 162 WADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 221

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 164
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 222 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL
Match: A0A1S3BQD6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492384 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 3.25e-121
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR
Sbjct: 102 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 161

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WADLVNPGSVDVDLKLPHKKK KADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 162 WADLVNPGSVDVDLKLPHKKKVKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 221

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSGSG 164
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF+SGSG
Sbjct: 222 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFTSGSG 265

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL
Match: A0A6J1ERI7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 4.84e-117
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRR
Sbjct: 106 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRR 165

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD+VNPGSVDVDLKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 166 WADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 225

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 162
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 226 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 267

[Close]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL
Match: A0A6J1ETS8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435884 PE=3 SV=1)

HSP 1 Score: 341 bits (874), Expect = 5.01e-117
Identity = 156/162 (96.30%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 1   MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADPTTLLVAQLALMGWVEGRR 60
           MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAG+REYFADPTTLLVAQL LMGWVEGRR
Sbjct: 107 MHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGTREYFADPTTLLVAQLGLMGWVEGRR 166

Query: 61  WADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 120
           WAD+VNPGSVDVDLKLPHKKK   DVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL
Sbjct: 167 WADMVNPGSVDVDLKLPHKKKPTPDVGYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRL 226

Query: 121 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 162
           AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG
Sbjct: 227 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFSSG 268

The following BLAST results are available for this feature:

BLAST of Cucsat.G7482.T11 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCQ4	6.4e-74	76.40	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
Q9SYW8	1.0e-58	60.63	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]
P13869	1.3e-58	60.63	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
P10708	2.9e-58	60.00	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P27521	1.2e-35	46.88	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Cucsat.G7482.T11 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144043.1	6.18e-122	100.00	photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucumis sativus]...	[more]
XP_008450947.1	6.72e-121	98.78	PREDICTED: photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucum...	[more]
XP_022929243.1	9.99e-117	96.30	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X2 [Cucur...	[more]
XP_022929235.1	1.03e-116	96.30	photosystem I chlorophyll a/b-binding protein 6, chloroplastic isoform X1 [Cucur...	[more]
KAG7021985.1	1.03e-116	96.30	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic [Cucurbita argyro...	[more]

BLAST of Cucsat.G7482.T11 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX05	2.99e-122	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5A7UKU4	3.25e-121	98.78	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BQD6	3.25e-121	98.78	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1ERI7	4.84e-117	96.30	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1ETS8	5.01e-117	96.30	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 1..152 e-value: 2.7E-50 score: 172.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 1..132 e-value: 1.2E-34 score: 120.2
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..159
None	No IPR available	PANTHER	PTHR21649:SF5	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..159
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 1..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G7482	Cucsat.G7482	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7482.T11.E1	Cucsat.G7482.T11.E1	exon
Cucsat.G7482.T11.E2	Cucsat.G7482.T11.E2	exon
Cucsat.G7482.T11.E3	Cucsat.G7482.T11.E3	exon
Cucsat.G7482.T11.E4	Cucsat.G7482.T11.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7482.T11.C1	Cucsat.G7482.T11.C1	CDS
Cucsat.G7482.T11.C2	Cucsat.G7482.T11.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7482.T11	Cucsat.G7482.T11-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0046872	metal ion binding