Cucsat.G5945.T5 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATAGTTTTTGTTTTGGATTTTATGAGTTAAATTGGAACTCGATCCCACACATCAAGGGACATTCTTTAATATACCATAATGTATTAGTTATTAACATTGTCCTATTGTGCAGGAATTAATGCACCAACATCACAGTCCTTCATAAACTATGTCCTCTTGGCAATTGTCTATGGAAGTATAGTGCTCTACCGTAAGAAAGCACTCAAGGTGATTATGATTCTTTTTTTATTGGATTTCTTAAAAACTGATCCATTGGCTAAGTTGAACAATTGAATGTTTCTCATATTGTTGATGAAGTTTATGAGACTAAGTTTTCTGAATGTTTTTCTTGCTTCCTATTTCTCAACCCGCAATTCTGGTCACTTCGGATAATTTCTCAACCCGCAATTCAACATACAATCATTTAGCATAATTTGTTTTCATGCCTCCTTTTTCCATTTGGTCACTTCGGACTTTTTTATACATGTAGATTAAAAAAAGTTCAAAATATTAAATCAGATTACTTGCATGACACAAAGCATGGTATGGTGATGCTACCTTAAAAATCTAAAAAGTTCATTTTATGCATAAAACTTTTTAAGTTGTAGATATAAAAGATCAAATTTTCTCACCGTTTGTCTTTCTTTTTTGGGTGTGAAGTACAAAGATAACTTTCCCTGAAAAGGAGGTGATCTGGCCTTGTTTTACCCTATGCGTCTACCTTGTTTAGTTAGATGGCTAAAGGTGGCTGTCACATGTTATAGTGATTTAGTTGTTGAAGTAGAGCTATGAATTGTTGTGTGATCTTACTCATATTTGTTGAACTAGGCTTGAGTACAGCCATTGCTATTTCTTTGTCTTAAGTAGAAGCGACTGATAGTGCCAAAATAGTACTGAATTATAAGAACATTGAATCATAAGGTGACATGGGACTTGGGAGAAGTCCTTAATCTATTAGGAGTAAAACGTTTTTCACATAAAGATGTTAGAACTGCGTGTTGTTTTTTTTTATATGCAGCCGATTTTAGTTTCTTTTGCTAACTCATAGCTATGATGTGTGAATTTCTTACTTGTCTTGTTTTCAAATATTTCAGGCAAAATGGTACTTCTACATACCACTAGGATTGGTAGATGTAGAAGCCAACTACCTTGGTACGGATATTTTTCTTGTCTTACTGGTTTTATTCTTTGAGAAATATTCTAACGAAGCTTTATATGACATGAGGATAAAAACCTTCTTCCTTTGTGTTTTCCTTGTAAAAGAGTATTTTTATGAACATTCTCCAGTAATCATTGGTCAAGAATCATGAGCATAGCCTATAGAAGCTTTATATATATGGGTTTTGATCTTTTCTTTCATAATACTATGCTAACTGTTTGATAATGTGAAACTGATGTTATTCTTATGTGAGGTGCAGTTGTGAAGGCCTATCAGTACACATCTCTAACAAGTGTCATGCTGCTGGATTGTTGGACAATCCCTTGTGTTATGCTGCTAACCTGGCTTTTCCTGAAAACAAAATACCGATTCAGGAAAATAGCTGGTGTTGTTGTTTGTGTTGCCGGCCTTGTCATGGTCATTTTTTCTGATGTTCATGCTGGTGATCGAGCTGGTAATGAAACAGGCCCCTTTATGCTCTCATTGGGTCATCCCTTACCCTCTAACTTGGTTTTTTAAGACATTTCACTATATCCATATGCATGGTCATGATGAACTTTGCAAATTGATATTTCCTTGTATTTACGTGCACCAATATGACTTGCAGGAGGCAGCAGCCCACTTAAGGGGGATGCTCTTGTCATAGCTGGTGCTACCCTTTACGCTGTTACTAATGTCAGCGAGGTAAAGATACATTTTGAAGTATTACTTTTCCCTTACTGGTAGGGTCAAGATATTTGATGACTGGGTCTCTCAAGACTTTTGGGACATTAATTGTTATTGCTCGCCTACTTGCGTGTCTTAGTTTGTGATATACAATTATTACACACTTTCTAACTGTCAATTTAACTTTCTGGTGAAGGAATTTCTGGTGAAGAATGCTGACAGAGTGGAGCTAATGGCTATGTTAGGTATCTTTGGTGCCATCATCAGTGCAATCCAGATGTATCCTTGGGTTCATAACTCATAATTGTCTTAATGTTCTTTGTTTTTTTTTTTTACCTTAGATTTTCTCTTGTTCAAAGAAAGAATTCAAGTGCAGACTCTCTATGGTTCAATATTGCTTTTGATCTTTTGTTCTAAGAAACGTCACATTATAAAATAGGCATTAAAGTAACTGCTGCTTCTAACTTTTTTTTTTGAAAAAAAAAATGTGTACGATGTTTTCCTTGACAGTTCATTTAGAAGCATAATTGAGCGCAATGAGTTGAAAGCCATTCGATGGACAGCCAAAGCAGTAAGTCCCTTCTCTCTCTCCCCCTAGCCTACAAACAACCTCAAATTGTCACACAGCATGACATCCCTCCTTACAAAATTATTTCGTAGGGAAAATGTTTTTTGGTTAGAAAAAGGTGAGGTTTTCTTTAGTGATATCAAGGTGAAACAAAAATTTTGTGCCAAATGTAAAAATGGGGGGTGGCTGGAATCAACTCAAAACAAGCCATTTGAGTTTCATTCCTCCTTCCGTAACTCTTACGAACCCAAGCCATTAAATCAACGACTTTCTTAACTTTACATAACTTTAGATATGTACTATATTGATTGAGTTCCGATGTTAATCTCTCCTAGAATTTGACATTCTGATGTGTAACAATTGTTTTCATCTTATTTCTTTCAGGCAATTCCTTTTACTGGATTTTCTGTGGCTATGTTTCTGTTCTACTCGTTTGTCCCAATACTGCTTCAGGTATGGGTCAGAATATTTGTTTATGTTGTCTAGTTCTTTTCTTTGCAAGAAAGAGGACAATGTAAGATGTTTACTCCAATATAATGCAAGTTGATAGCTGAATGCTAATCATTGTTATCACGTCAAGTTGTAATCTTTTTAATTTTGTTATACACCATGAAGAAAAATTGTTTATAAGAACTAGATGTATATTACTTAGTTTTTCTTTAATCGTTTGATGTTTTGGTTATATAGATGACTTCTTTTTTTCACTCTTTATGAGAGTACACTGTTAGGTTTTTCTTAATCCTTGCAAACAGAAAAACCCAACAAATATCCAAAAACAGGGGAATAGCCACCCCAATCTTGTGATATATTGCAGAGAAACTAAATTACAAGCAAATAAGAAAGCTCCAGGATCAGGATATAAGAACAATGCAATAAAGAATAGTTTATTGGTATTTTAGATCTATAGCATATTTTATGTTAGAAATTGGTTCTAAGCATATGTATCTTTTGCAGATTAGTGGATCCACAATGTTGAACCTGTCTCTACTAACCTCAGACATGTGGTCAATTGTGATTCGCATTGTTGCTTATAATGAAAAGGTCCGTGATCATTTGTCACCATCATGGTGCACTTTCATGACTCGTATTCGGTGTTTTGTTTGTCTAAATCAAGTCATTTTCTGCAGGTTGATTGGCTTTACTACTTGGCCTTTGCTGCTGTTATCATTGGGCTCATTATTTATTCAGTGTATGTAATCTCTCTCATTTTACATTCTCTTTCGGTTACTTCTCTTGCAAAATGCTCGTAAAATAAGCATACATACTGCTCGGGAAGTGTCACTTGAACAATCCCGGGGTTGAATCATAGTTCCATTTCCTTTAGAGTATGGAGTGTTGTAAGCTGATGACTGGAGTGGATGATGGTTATGATGAAGTTATTATATTTGGGTTGTGTTAGATGTATATTGTAATATAACATGAGAATCAGCCATTTTCACAAAGTAAGTTGACATACTAAATTGTTTGTTGCTCGGACTGCGTCGGAACTTCCATTCCATCCGAAATGTAACTATTTATTTAACAGACAAAAAACATGAAGAACAGCCATCTTACCTACTGCATATTTTGTTGCCCTTTCTTTTGTATAAAGTAATTACTGCTTAAGCATTTTTCGGCCGATAGCTACATAGATCGCCATTGCCTTTTGTCCTTGTTGATTGTGGCTACTTTAGTTTTATACACGTCTGCTTGTTTAGAGTACTGTGATTCTTGGATATGTTGCTCTCTTTCCATCTTAGCTTAACTTTAATCTCTATGTGCAGGGGTGAGAAAGAAGAAGAAGATCAACTTCAAGCTAATGTTGGGGACGAAGAAGCCGAGCATGAAAAACGTCCATACAAGGAATGCCCATCAAGAAACCGGGTACAAGGAATATCAGCTAGCAGTTCAAAGATCTAGGATGGTAGAAAAAAAAAAGAAAATCTTAGGAAGAAATAAATATTTTGCTTCCTAGGATGAATTAGGAAAGAAGTATCTTATTCTTATCTAATCCCCATTTAGAGTTTGCTTATTTTTTGTTGGCCTTTGGATGGGGTTGTCATTGCTCAACATCCCATTGCTCATTACTAACAATCTGGCTAAGTAATTATTGATGAAAGCTTTGATTTTCTGTTGTGGTCTGAAATTGAATTTGTCGGTTAATTAAATATGTGCAAGTTACAAAGACCATACTACAAAGCAGTATGATGATAACTTGTAACTGCACCCTCAACTTTCAAGAACTATTAAGTCCCTAAACT ATGCTGCTGGATTGTTGGACAATCCCTTGTGTTATGCTGCTAACCTGGCTTTTCCTGAAAACAAAATACCGATTCAGGAAAATAGCTGGTGTTGTTGTTTGTGTTGCCGGCCTTGTCATGGTCATTTTTTCTGATGTTCATGCTGGTGATCGAGCTGGAGGCAGCAGCCCACTTAAGGGGGATGCTCTTGTCATAGCTGGTGCTACCCTTTACGCTGTTACTAATGTCAGCGAGGAATTTCTGGTGAAGAATGCTGACAGAGTGGAGCTAATGGCTATGTTAGGTATCTTTGGTGCCATCATCAGTGCAATCCAGATAAGCATAATTGAGCGCAATGAGTTGAAAGCCATTCGATGGACAGCCAAAGCAGCAATTCCTTTTACTGGATTTTCTGTGGCTATGTTTCTGTTCTACTCGTTTGTCCCAATACTGCTTCAGATTAGTGGATCCACAATGTTGAACCTGTCTCTACTAACCTCAGACATGTGGTCAATTGTGATTCGCATTGTTGCTTATAATGAAAAGGTTGATTGGCTTTACTACTTGGCCTTTGCTGCTGTTATCATTGGGCTCATTATTTATTCAGTGGGTGAGAAAGAAGAAGAAGATCAACTTCAAGCTAATGTTGGGGACGAAGAAGCCGAGCATGAAAAACGTCCATACAAGGAATGCCCATCAAGAAACCGGGTACAAGGAATATCAGCTAGCAGTTCAAAGATCTAG MLLDCWTIPCVMLLTWLFLKTKYRFRKIAGVVVCVAGLVMVIFSDVHAGDRAGGSSPLKGDALVIAGATLYAVTNVSEEFLVKNADRVELMAMLGIFGAIISAIQISIIERNELKAIRWTAKAAIPFTGFSVAMFLFYSFVPILLQISGSTMLNLSLLTSDMWSIVIRIVAYNEKVDWLYYLAFAAVIIGLIIYSVGEKEEEDQLQANVGDEEAEHEKRPYKECPSRNRVQGISASSSKI Homology
BLAST of Cucsat.G5945.T5 vs. ExPASy Swiss-Prot
Match: Q5T1Q4 (Solute carrier family 35 member F1 OS=Homo sapiens OX=9606 GN=SLC35F1 PE=1 SV=2) HSP 1 Score: 163.3 bits (412), Expect = 3.4e-39 Identity = 81/195 (41.54%), Postives = 130/195 (66.67%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy Swiss-Prot
Match: Q8BGK5 (Solute carrier family 35 member F1 OS=Mus musculus OX=10090 GN=Slc35f1 PE=1 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38 Identity = 81/195 (41.54%), Postives = 129/195 (66.15%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy Swiss-Prot
Match: Q8IXU6 (Solute carrier family 35 member F2 OS=Homo sapiens OX=9606 GN=SLC35F2 PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 4.1e-37 Identity = 77/194 (39.69%), Postives = 127/194 (65.46%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy Swiss-Prot
Match: Q7TML3 (Solute carrier family 35 member F2 OS=Mus musculus OX=10090 GN=Slc35f2 PE=1 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36 Identity = 77/194 (39.69%), Postives = 127/194 (65.46%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy Swiss-Prot
Match: O59785 (Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC320.08 PE=1 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 6.0e-36 Identity = 80/195 (41.03%), Postives = 118/195 (60.51%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. NCBI nr
Match: XP_011656528.1 (solute carrier family 35 member F1 [Cucumis sativus] >XP_031743416.1 solute carrier family 35 member F1 [Cucumis sativus] >KGN45980.1 hypothetical protein Csa_005531 [Cucumis sativus]) HSP 1 Score: 456 bits (1173), Expect = 8.84e-160 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. NCBI nr
Match: XP_038886581.1 (solute carrier family 35 member F1-like [Benincasa hispida] >XP_038886582.1 solute carrier family 35 member F1-like [Benincasa hispida]) HSP 1 Score: 440 bits (1131), Expect = 2.19e-153 Identity = 229/240 (95.42%), Postives = 235/240 (97.92%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. NCBI nr
Match: XP_008445688.1 (PREDICTED: solute carrier family 35 member F1-like [Cucumis melo] >XP_016900102.1 PREDICTED: solute carrier family 35 member F1-like [Cucumis melo] >KAA0063173.1 solute carrier family 35 member F1-like [Cucumis melo var. makuwa]) HSP 1 Score: 432 bits (1112), Expect = 1.24e-150 Identity = 225/231 (97.40%), Postives = 229/231 (99.13%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. NCBI nr
Match: XP_023548206.1 (solute carrier family 35 member F1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 399 bits (1025), Expect = 2.56e-137 Identity = 208/237 (87.76%), Postives = 221/237 (93.25%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. NCBI nr
Match: XP_022992331.1 (solute carrier family 35 member F1-like [Cucurbita maxima]) HSP 1 Score: 395 bits (1014), Expect = 1.25e-135 Identity = 207/238 (86.97%), Postives = 221/238 (92.86%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy TrEMBL
Match: A0A0A0K8A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G041160 PE=3 SV=1) HSP 1 Score: 456 bits (1173), Expect = 4.28e-160 Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy TrEMBL
Match: A0A1S4DVU1 (solute carrier family 35 member F1-like OS=Cucumis melo OX=3656 GN=LOC103488648 PE=3 SV=1) HSP 1 Score: 432 bits (1112), Expect = 6.01e-151 Identity = 225/231 (97.40%), Postives = 229/231 (99.13%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy TrEMBL
Match: A0A5A7V517 (Solute carrier family 35 member F1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00610 PE=3 SV=1) HSP 1 Score: 432 bits (1112), Expect = 6.01e-151 Identity = 225/231 (97.40%), Postives = 229/231 (99.13%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy TrEMBL
Match: A0A6J1JT96 (solute carrier family 35 member F1-like OS=Cucurbita maxima OX=3661 GN=LOC111488671 PE=3 SV=1) HSP 1 Score: 395 bits (1014), Expect = 6.04e-136 Identity = 207/238 (86.97%), Postives = 221/238 (92.86%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. ExPASy TrEMBL
Match: A0A6J1D8G4 (solute carrier family 35 member F1-like OS=Momordica charantia OX=3673 GN=LOC111018591 PE=3 SV=1) HSP 1 Score: 392 bits (1008), Expect = 4.77e-135 Identity = 214/241 (88.80%), Postives = 223/241 (92.53%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. TAIR 10
Match: AT3G59340.1 (Eukaryotic protein of unknown function (DUF914) ) HSP 1 Score: 296.2 bits (757), Expect = 2.4e-80 Identity = 144/204 (70.59%), Postives = 176/204 (86.27%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. TAIR 10
Match: AT3G59310.1 (Eukaryotic protein of unknown function (DUF914) ) HSP 1 Score: 293.1 bits (749), Expect = 2.0e-79 Identity = 145/218 (66.51%), Postives = 176/218 (80.73%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. TAIR 10
Match: AT3G59320.2 (Eukaryotic protein of unknown function (DUF914) ) HSP 1 Score: 283.5 bits (724), Expect = 1.6e-76 Identity = 140/212 (66.04%), Postives = 177/212 (83.49%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. TAIR 10
Match: AT3G59320.1 (Eukaryotic protein of unknown function (DUF914) ) HSP 1 Score: 283.5 bits (724), Expect = 1.6e-76 Identity = 140/212 (66.04%), Postives = 177/212 (83.49%), Query Frame = 0
BLAST of Cucsat.G5945.T5 vs. TAIR 10
Match: AT3G59310.2 (Eukaryotic protein of unknown function (DUF914) ) HSP 1 Score: 276.9 bits (707), Expect = 1.5e-74 Identity = 145/249 (58.23%), Postives = 176/249 (70.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|