Cucsat.G4987.T6 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G4987.T6
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	GATA transcription factor 25
Location	ctg1227: 1423431 .. 1427588 (-)
RNA-Seq Expression	Cucsat.G4987.T6
Synteny	Cucsat.G4987.T6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGGGCATATTTCGTAAATTCCGCCACCATTTAGGATCCTCTTTCTTGCTTCAGTCCACAGTCCCTTGTCCTCAGTCGAATCCCTCCATTCTCTCGTTTCTCCACACTTCCCACCAACACAGCAACTCCTACAGTATCTACAAACTTCTCGTCTTCTTCACATTCTCACAAATCTTCTCCTATCTCTTCTCATCTTCATCCATTGGATTCGATTTCCATCTGTGTATTATCTCAATTCTCTCTCAGACCATCCCTTCTTTCCACATTCTTGCAATGCTCCAAACCCAGTTGATTTTCTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTAGCGACACCGGCGAGCCATTGGATAATCGTCTTGTTCGATATGGAGCTCACTCTCTCGAAGACGGTGTTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCCGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCTGAGAAGGTATAGTGTTGACGAGATTTAGGGTTTTGGGGTTTTCAATTTTGTTCTTTCTTTTCGGTGATGTGGGACGTGTTTATAAAACTTGAAATTTCTGAAAGTTCTGAGTTTTCGAAATGGAATACATTGATATCCGTGGCGGCGAAGGGGAGGGAGAATTGAACATGAGGTTTGATTAATTGTAAAGTAATAGCATTCCGTACCCTTTGCAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGGTACTGCTGGAAACTTGTATCACATTGTTTTCGAAGGAATTTATGTTTTTCTTTTCAATTTATTTTTTTTCATATTTTGTAGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGTCTGGCGATGAACATGTTAAGTTACTGGCTAGATTTTGTATTTTCCATGTTTGACATTCTTTGATTTCACCTTTTCATTCTATTTCACATTTTCAATTAGATCTAATTCTGTTGTACATTAGCAGTTTTTTGGTTTATGCATGTTGTTTGTTCACCCAGATTTCGCTTTCTAAAGACCTCTGGGTTTTTGATCTCTTATTTAAATTGACAACATACTTGCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAGCCATGGCAATGTCTCAGAGTTAGGTCAAGATGAAAGTCCATCGGAAACTTCGTGAGTTTTCATAGTCCTGTGAATTATAGCAATCTGAAACAATCATTTAACACTTCAATGCTGTCTGTAGTATATGAAAGTTCATTTCAGTATCAGAATTTGTACTCTTTGTTGTACGTTAAGACCTCACATTTACATCTTATTTATATCCATGGAATTTTGCGCTTTCTTTAGATGTACAAATTGTGGCATAAGTTCAATGTCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCATGCGGGCTTTTTTGGGCAAACAGGGTAAGTATGCTCAAAGTTGATTATTTCGTACTGCTTCTTATAGTTATATTTTAAGGAAAGCTTCACTTTCCCTAGATGGTCTGGGTGATGGATTTGCCAGACCTTTGCATGGAACTTATTGGCATCTTATGATGTAAGACGTGTCATCCTTATTGTTCTTTTTTAATTGTGTGTGAACGTTTGTTTTTAAGTGCTTGTTTGCTTGGATGTTTTGAGTTAAAGATTTATCATTTTTATGGATCTCTATGGGGGGCACAATGATTCTAGGCTCTAGCTGCACTTAGGACGAGCGGGAATAGAAAAGGGGATGATGCTCAGTGTCTAGGTTACTTTGGGCCTTGTCGACAATTTGTATATCAGACTCGCACCAGTTCTTGCATCTTTAATCTTCTTATTCATGCACTAATTTTCTATTTCTCCATTACTTTACTAACCACCTTGTGTGAATATCACTCTCTTCGCCATATCCTTCTCCATTTTGATGCTTCTTGTTGTGGTATCATTAGAGTAGTTCTGTAGTACTATTTGAGTTGTTAATCGTTTTTTTTTCAGTTAGATAGTTAGTTTATTTGGATTATTGGGCTATAGCTTCTCTATAAGTAGAGCTGATGGAACTTTTAATCAGTATTAGAGGTTTAGTTAAAAGTTTTTTGTGATATTTTCTCCTTTGTTTCTTGATCGCCTTAGCTTCCGTGCTCGTTGTTTAAATCTCATTGTTCAATAATAATTTCTCTCTCTATCCATGGTTTTTCTTGTTTAGTCCTCATATTCTTTTTTTTCTTTCTACTGTTAATGTCTTTCACGCATTTTCTTTAGATGTTCTTTGAGTTATGGAAATTCTTTTCTTCCCTTGACCTACTTCCTCCTTGCATCCTAAATCTAGTGGAAGGATGCCCAATTCAATTCCATTTAATTGTTGTCACATTTTAGCACTATCCCAATAAAATCTCCAATTCTTATTTTGATTTCCTTGCAACTTTCTACATTGATTTTGAACTTGCATAAAGAGCTGTTCGAAGTTTGGCAAAAAGAAATTTACTGAAGTTTATTGCTGCCTCTTCCTTAACTGGGTAGAAAAAGGAGTTGTCGAAATGGGGAGAAATCTTGAGAGTAAGCCCAAGTTAAAGCAAATGCAACTTCCCAAAGTTGCATAAAAATTTGTTGGGATCATCTCTGTAAAGCTTTTAGGTTTTAGTGGCTAAAGAATAAACTGAAATTTATGGACACATGGGAGGCATGGTGAAAGATATTGGACAGTTTCTTGCAAGTTACAATTTAAGAAATTCATCTCCTACTGCATCATATTGTACTGGAGATGAGTTATATATAACACTCCATTACAGAATGCTTCATTTTGACCATTTACCATGCAAAAATAAATCTCTTTCTAGGATTAAACAAAGGCAAACGTAATTTTATGATTTTTTGTTGGATGAGTAACAAAACTTTTATTAAGAAAAAATGAAATTTGAAAAACAAAATGCAAAAATAAATCCCACGAAATGGAGCCAAACTACAAAAGGATGCTCTAGAGGGTATTTATGGAAGGACCTTGTGATCGAAGTGAAAAAAGTAAAATAGAACCTAACAATCTATTCCAAAAAAAAAAAAAGAATCTAACAAGGACCGTACATCACTAAAAGAAATCTCTTTACCTCTGAAGTTTCTTTTTCTTTCTTCTTTTGGTAAGGGAAACACATTTTTCATTGAAATAATGAAAAGAGAAAATCTCACAGACAGGTATATGCTAGGATTAGGATGTACGCCCATGCATCTCAACTAGATTGACTCTCTAGATTGACTCCCTTAACATCCTCAGCATGTTCATAAAGAAGAGCAAAATACATACCAGTTAAAGTCGCGGCTCTAAAGTTTCTATTATTATTCATCTTTATTTGTTGAGAAATGAAGATTTTTGTGGGTAATTGGGGTGTATGCCATTGTTTGGGTGTTTGGAGAGGAAGGAATTCTTTTTAAATGGCAGGAGGTCTTGAGTGAGATATGGGCTTTGGTTAGGTTCCACATGTTCTCGTGGGCTTCACTCTATTATTCCTCTCCCTCAAAGACCCATAACACACCCCACCTGCCGAAAAGGCAAAAACAACCTGTGACAAAAAGGAAACATAATGAGGGCCTTCTGAACAAAATCTTATAACACCTTAAACACATCTAGATGTTCAGTCTTTTTAAAAGAATTTCTGAGAAAAGTCCATTTTCACGCTGTTGATGTCCTTAACACAGCCCATATCTTCTTTGTTCAAAGGGCCTCTCTATACCAATTTTTCTAGGGTTCACCCGATTGGTTTTGAGCATAGAACTCTGGCTGGATTCAGCCGTGTGCAACCTCTGCCTTCTGGAAACATCTTTTGTTTACCATTTGATTTGTTTCCTTTTGTACACTTGATATATTTTGGATTTTTCTTTCTATTCTATTAATGAAGTTGTTT

Coding sequence (CDS)

ATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCGACTGTAGCGACACCGGCGAGCCATTGGATAATCGTCTTGTTCGATATGGAGCTCACTCTCTCGAAGACGGTGTTGGAGTAGGCGGCATGGTCGAGGTTCTCAACCCTGATGCTGTTTATGTTCCCGCCGGTGATGGGTCCGACTTGGCTGTTCAGCGCAGTGATGGTTCGAATCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGACGCTGTCTCTCCTGAGAAGGTTCAAGCAGTGTTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCCAAACCAGAGGAATGCTTTGGACTTGCCTGGACGGAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAACGATGTTTCGAAAAGAAAGTTAGATACGGTGTCCGTCAGGAGGTTGCTCTCAGGTCTGGCGATGAACATGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGTTGGATGGTTCGTATAG

Protein sequence

MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRSGDEHDATQQRTVYFFQEVGWFV

Homology

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BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot
Match: Q9LRH6 (GATA transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=GATA25 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27
Identity = 76/139 (54.68%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 45  MVEVLNPDAVYVPAG----DGSDLAVQRSDGS-----------NQLTLSFRGQVYLFDAV 104
           M E+ +PD++Y  A     DGS L   RSDGS           NQLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 105 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NPNQRNALDLPGRSSQPQRAASLNRFRQKRK 164
             +KV AVL LLGG  EL+ G Q ++L    N    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 165 ERCFEKKVRYGVRQEVALR 167
            RCFEKKVRYGVRQEVALR
Sbjct: 159 ARCFEKKVRYGVRQEVALR 177

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BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot
Match: Q8H1G0 (GATA transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=GATA28 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-22
Identity = 76/162 (46.91%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 22  EPLDNRLVRYGAHSLEDGVGV----------GGMVEVLNPDAVYVPAG--DGSDLAVQR- 81
           +P+  +   +  H + +G G+          GGM E +  D    P    D     V R 
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 82  SDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNAL-DLP 141
           S+  +QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL        L +P+Q N +  LP
Sbjct: 78  SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPP-GLGSPHQNNRVSSLP 137

Query: 142 G---RSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 167
           G   R S PQR ASL RFR+KRK R F+KK+RY VR+EVALR
Sbjct: 138 GTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALR 178

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BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot
Match: Q8GXL7 (GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 34  HSLEDGVGVGGMVEVLNPDAVYVP--AGDGSDLAVQRS-DGSNQLTLSFRGQVYLFDAVS 93
           +S+ D    GGM E +  D    P  + D     V R  +  +QLTLSF+GQVY+FD VS
Sbjct: 36  NSMMDDHADGGMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVS 95

Query: 94  PEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNAL----DLPGRSSQPQRAASLNRFRQKR 153
           PEKVQAVLLLLGG E+     +  L +P+Q N +      P R S PQR ASL RFR+KR
Sbjct: 96  PEKVQAVLLLLGGREVPHTLPTT-LGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKR 155

Query: 154 KERCFEKKVRYGVRQEVALR 167
           K R F+K +RY VR+EVALR
Sbjct: 156 KGRNFDKTIRYTVRKEVALR 174

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BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot
Match: Q5Z4U5 (GATA transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA20 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 41  GVGGMVEV-LNPDAVYVPAGDGSDLAVQ---RSDGSNQLTLSFRGQVYLFDAVSPEKVQA 100
           GVGG V V ++ +A       G  LA     +   SNQLTLSF+G+VY+FD+VSP+KVQA
Sbjct: 90  GVGGEVAVPMDAEAAAQLDPHGGMLAASGAVQPMASNQLTLSFQGEVYVFDSVSPDKVQA 149

Query: 101 VLLLLGGCELSSGQQSVDLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVR 160
           VLLLLGG EL+ G      +     ++     R + P R ASL RFR+KRKER F+KK+R
Sbjct: 150 VLLLLGGRELNPG------LGSGASSSAPYSKRLNFPHRVASLMRFREKRKERNFDKKIR 209

Query: 161 YGVRQEVALR 167
           Y VR+EVALR
Sbjct: 210 YSVRKEVALR 213

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BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot
Match: A2XKR7 (GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 73  NQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNAL---DLPGR 132
           NQLTL F+G+VY+F++V+PEKVQAVLLLLG CE+  G    ++V PNQR      DL  R
Sbjct: 79  NQLTLLFQGEVYVFESVTPEKVQAVLLLLGSCEMPPG--LANMVLPNQRENRGYDDLLQR 138

Query: 133 SSQP-QRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 167
           +  P +R ASL RFR+KRKER F+KK+RY VR+EVALR
Sbjct: 139 TDIPAKRVASLIRFREKRKERNFDKKIRYAVRKEVALR 174

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BLAST of Cucsat.G4987.T6 vs. NCBI nr
Match: KAE8652136.1 (hypothetical protein Csa_021869 [Cucumis sativus])

HSP 1 Score: 326 bits (836), Expect = 2.37e-110
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60
           MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD
Sbjct: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60

Query: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120
           GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ
Sbjct: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120

Query: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166

[Close]

BLAST of Cucsat.G4987.T6 vs. NCBI nr
Match: XP_004152604.1 (GATA transcription factor 25 [Cucumis sativus])

HSP 1 Score: 326 bits (836), Expect = 3.82e-110
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60
           MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD
Sbjct: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60

Query: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120
           GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ
Sbjct: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120

Query: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166

[Close]

BLAST of Cucsat.G4987.T6 vs. NCBI nr
Match: XP_008444911.1 (PREDICTED: GATA transcription factor 25 [Cucumis melo] >KAA0065101.1 GATA transcription factor 25 [Cucumis melo var. makuwa])

HSP 1 Score: 319 bits (817), Expect = 2.96e-107
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60
           MYARAQPLTMGDQIADC D+GEPLDNRLVRYGAHSLEDG GVGGMVEVLNPDAVYVPAGD
Sbjct: 1   MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGGVGGMVEVLNPDAVYVPAGD 60

Query: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120
           GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ
Sbjct: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120

Query: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           RNALD PGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 RNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166

[Close]

BLAST of Cucsat.G4987.T6 vs. NCBI nr
Match: XP_023546307.1 (GATA transcription factor 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299 bits (765), Expect = 2.62e-99
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIA---DCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVP 60
           MY RA+PLTMGDQIA   DC DTGEPLDNRLVRYGAHSLEDG GVG M+E LNPDAVYV 
Sbjct: 1   MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVS 60

Query: 61  AGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120
           AGDGSD+AVQRSDGS+QLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN
Sbjct: 61  AGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120

Query: 121 PNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
            NQRNA+DLPGRSSQPQRAASLNRFRQKRKERCF+KKVRYGVRQEVALR
Sbjct: 121 QNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALR 169

[Close]

BLAST of Cucsat.G4987.T6 vs. NCBI nr
Match: XP_022997231.1 (GATA transcription factor 25-like [Cucurbita maxima])

HSP 1 Score: 299 bits (765), Expect = 2.62e-99
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIA---DCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVP 60
           MY RA+PLTMGDQIA   DC DTGEPLDNRLVRYGAHSLEDG GVG M+E LNPDAVYV 
Sbjct: 1   MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGTGVGSMIEDLNPDAVYVS 60

Query: 61  AGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120
           AGDGSD+AVQRSDGS+QLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN
Sbjct: 61  AGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120

Query: 121 PNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
            NQRNA+DLPGRSSQPQRAASLNRFRQKRKERCF+KKVRYGVRQEVALR
Sbjct: 121 QNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALR 169

[Close]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL
Match: A0A5A7VH83 (GATA transcription factor 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004350 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 1.43e-107
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60
           MYARAQPLTMGDQIADC D+GEPLDNRLVRYGAHSLEDG GVGGMVEVLNPDAVYVPAGD
Sbjct: 1   MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGGVGGMVEVLNPDAVYVPAGD 60

Query: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120
           GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ
Sbjct: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120

Query: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           RNALD PGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 RNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166

[Close]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL
Match: A0A1S3BBG8 (GATA transcription factor 25 OS=Cucumis melo OX=3656 GN=LOC103488116 PE=3 SV=1)

HSP 1 Score: 319 bits (817), Expect = 1.43e-107
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGD 60
           MYARAQPLTMGDQIADC D+GEPLDNRLVRYGAHSLEDG GVGGMVEVLNPDAVYVPAGD
Sbjct: 1   MYARAQPLTMGDQIADCGDSGEPLDNRLVRYGAHSLEDGGGVGGMVEVLNPDAVYVPAGD 60

Query: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120
           GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ
Sbjct: 61  GSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQ 120

Query: 121 RNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           RNALD PGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 RNALDFPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166

[Close]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL
Match: A0A0A0LNY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370430 PE=3 SV=1)

HSP 1 Score: 308 bits (789), Expect = 1.91e-103
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 10  MGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRS 69
           MGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRS
Sbjct: 1   MGDQIADCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVPAGDGSDLAVQRS 60

Query: 70  DGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGR 129
           DGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGR
Sbjct: 61  DGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNALDLPGR 120

Query: 130 SSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
           SSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR
Sbjct: 121 SSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 157

[Close]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL
Match: A0A6J1K6Y5 (GATA transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111492195 PE=3 SV=1)

HSP 1 Score: 299 bits (765), Expect = 1.27e-99
Identity = 153/169 (90.53%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIA---DCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVP 60
           MY RA+PLTMGDQIA   DC DTGEPLDNRLVRYGAHSLEDG GVG M+E LNPDAVYV 
Sbjct: 1   MYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGTGVGSMIEDLNPDAVYVS 60

Query: 61  AGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120
           AGDGSD+AVQRSDGS+QLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN
Sbjct: 61  AGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120

Query: 121 PNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
            NQRNA+DLPGRSSQPQRAASLNRFRQKRKERCF+KKVRYGVRQEVALR
Sbjct: 121 QNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALR 169

[Close]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL
Match: A0A6J1HF27 (GATA transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111462938 PE=3 SV=1)

HSP 1 Score: 293 bits (751), Expect = 1.70e-97
Identity = 151/169 (89.35%), Postives = 157/169 (92.90%), Query Frame = 0


Query: 1   MYARAQPLTMGDQIA---DCSDTGEPLDNRLVRYGAHSLEDGVGVGGMVEVLNPDAVYVP 60
           MY RA+PLTMGDQIA   DC DTGE LDNRLVRYGAHSLEDG GVG M+E LNPDAVYV 
Sbjct: 1   MYGRAEPLTMGDQIASTPDCGDTGEALDNRLVRYGAHSLEDGAGVGSMIEDLNPDAVYVS 60

Query: 61  AGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVN 120
           AGDGSD+AVQRSDGS+QLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQ SVDLVN
Sbjct: 61  AGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQPSVDLVN 120

Query: 121 PNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 166
            NQRNA+DLPGRSSQPQRAASLNRFRQKRKERCF+KKVRYGVRQEVALR
Sbjct: 121 QNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALR 169

[Close]

BLAST of Cucsat.G4987.T6 vs. TAIR 10
Match: AT4G24470.1 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 76/139 (54.68%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 45  MVEVLNPDAVYVPAG----DGSDLAVQRSDGS-----------NQLTLSFRGQVYLFDAV 104
           M E+ +PD++Y  A     DGS L   RSDGS           NQLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 105 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NPNQRNALDLPGRSSQPQRAASLNRFRQKRK 164
             +KV AVL LLGG  EL+ G Q ++L    N    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 165 ERCFEKKVRYGVRQEVALR 167
            RCFEKKVRYGVRQEVALR
Sbjct: 159 ARCFEKKVRYGVRQEVALR 177

[Close]

BLAST of Cucsat.G4987.T6 vs. TAIR 10
Match: AT4G24470.2 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 76/139 (54.68%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 45  MVEVLNPDAVYVPAG----DGSDLAVQRSDGS-----------NQLTLSFRGQVYLFDAV 104
           M E+ +PD++Y  A     DGS L   RSDGS           NQLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 105 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NPNQRNALDLPGRSSQPQRAASLNRFRQKRK 164
             +KV AVL LLGG  EL+ G Q ++L    N    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 165 ERCFEKKVRYGVRQEVALR 167
            RCFEKKVRYGVRQEVALR
Sbjct: 159 ARCFEKKVRYGVRQEVALR 177

[Close]

BLAST of Cucsat.G4987.T6 vs. TAIR 10
Match: AT4G24470.3 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 76/139 (54.68%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 45  MVEVLNPDAVYVPAG----DGSDLAVQRSDGS-----------NQLTLSFRGQVYLFDAV 104
           M E+ +PD++Y  A     DGS L   RSDGS           NQLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 105 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NPNQRNALDLPGRSSQPQRAASLNRFRQKRK 164
             +KV AVL LLGG  EL+ G Q ++L    N    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 165 ERCFEKKVRYGVRQEVALR 167
            RCFEKKVRYGVRQEVALR
Sbjct: 159 ARCFEKKVRYGVRQEVALR 177

[Close]

BLAST of Cucsat.G4987.T6 vs. TAIR 10
Match: AT1G51600.1 (ZIM-LIKE 2 )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 76/162 (46.91%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 22  EPLDNRLVRYGAHSLEDGVGV----------GGMVEVLNPDAVYVPAG--DGSDLAVQR- 81
           +P+  +   +  H + +G G+          GGM E +  D    P    D     V R 
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 82  SDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNAL-DLP 141
           S+  +QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL        L +P+Q N +  LP
Sbjct: 78  SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPP-GLGSPHQNNRVSSLP 137

Query: 142 G---RSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 167
           G   R S PQR ASL RFR+KRK R F+KK+RY VR+EVALR
Sbjct: 138 GTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALR 178

[Close]

BLAST of Cucsat.G4987.T6 vs. TAIR 10
Match: AT1G51600.2 (ZIM-LIKE 2 )

HSP 1 Score: 107.1 bits (266), Expect = 1.6e-23
Identity = 76/162 (46.91%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 22  EPLDNRLVRYGAHSLEDGVGV----------GGMVEVLNPDAVYVPAG--DGSDLAVQR- 81
           +P+  +   +  H + +G G+          GGM E +  D    P    D     V R 
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 82  SDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNPNQRNAL-DLP 141
           S+  +QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL        L +P+Q N +  LP
Sbjct: 78  SEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPP-GLGSPHQNNRVSSLP 137

Query: 142 G---RSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALR 167
           G   R S PQR ASL RFR+KRK R F+KK+RY VR+EVALR
Sbjct: 138 GTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALR 178

The following BLAST results are available for this feature:

BLAST of Cucsat.G4987.T6 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRH6	3.0e-27	54.68	GATA transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=GATA25 PE=1 SV=2	[more]
Q8H1G0	2.3e-22	46.91	GATA transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=GATA28 PE=1 SV=1	[more]
Q8GXL7	1.2e-20	50.00	GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2	[more]
Q5Z4U5	1.6e-20	50.77	GATA transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA20 ...	[more]
A2XKR7	2.8e-20	60.20	GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE...	[more]

BLAST of Cucsat.G4987.T6 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652136.1	2.37e-110	100.00	hypothetical protein Csa_021869 [Cucumis sativus]	[more]
XP_004152604.1	3.82e-110	100.00	GATA transcription factor 25 [Cucumis sativus]	[more]
XP_008444911.1	2.96e-107	97.59	PREDICTED: GATA transcription factor 25 [Cucumis melo] >KAA0065101.1 GATA transc...	[more]
XP_023546307.1	2.62e-99	90.53	GATA transcription factor 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997231.1	2.62e-99	90.53	GATA transcription factor 25-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G4987.T6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VH83	1.43e-107	97.59	GATA transcription factor 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BBG8	1.43e-107	97.59	GATA transcription factor 25 OS=Cucumis melo OX=3656 GN=LOC103488116 PE=3 SV=1	[more]
A0A0A0LNY5	1.91e-103	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370430 PE=3 SV=1	[more]
A0A6J1K6Y5	1.27e-99	90.53	GATA transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111492195 PE...	[more]
A0A6J1HF27	1.70e-97	89.35	GATA transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111462938 ...	[more]

BLAST of Cucsat.G4987.T6 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24470.1	2.2e-28	54.68	GATA-type zinc finger protein with TIFY domain	[more]
AT4G24470.2	2.2e-28	54.68	GATA-type zinc finger protein with TIFY domain	[more]
AT4G24470.3	2.2e-28	54.68	GATA-type zinc finger protein with TIFY domain	[more]
AT1G51600.1	1.6e-23	46.91	ZIM-LIKE 2	[more]
AT1G51600.2	1.6e-23	46.91	ZIM-LIKE 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 68..103 e-value: 1.6E-11 score: 54.3
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 70..102 e-value: 2.7E-12 score: 45.8
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 68..103 score: 14.24507
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 135..165 e-value: 5.2E-10 score: 39.3
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 135..177 score: 8.948688
None	No IPR available	PANTHER	PTHR46125	GATA TRANSCRIPTION FACTOR 28	coord: 22..170
None	No IPR available	PANTHER	PTHR46125:SF20	GATA TRANSCRIPTION FACTOR 25	coord: 22..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G4987	Cucsat.G4987	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4987.T6.E1	Cucsat.G4987.T6.E1	exon
Cucsat.G4987.T6.E2	Cucsat.G4987.T6.E2	exon
Cucsat.G4987.T6.E3	Cucsat.G4987.T6.E3	exon
Cucsat.G4987.T6.E4	Cucsat.G4987.T6.E4	exon
Cucsat.G4987.T6.E5	Cucsat.G4987.T6.E5	exon
Cucsat.G4987.T6.E6	Cucsat.G4987.T6.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4987.T6.C4	Cucsat.G4987.T6.C4	CDS
Cucsat.G4987.T6.C3	Cucsat.G4987.T6.C3	CDS
Cucsat.G4987.T6.C2	Cucsat.G4987.T6.C2	CDS
Cucsat.G4987.T6.C1	Cucsat.G4987.T6.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G4987.T6	Cucsat.G4987.T6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0008270	zinc ion binding