Cucsat.G21389.T4 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G21389.T4
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	AT-hook motif nuclear-localized protein
Location	ctg910: 2347657 .. 2351303 (+)
RNA-Seq Expression	Cucsat.G21389.T4
Synteny	Cucsat.G21389.T4

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCTCAACTTGGAGGGATTTTTTGTTTCTGCAACTTAGTTTTTTTAAAAATGAAAATAGAGCTTTGTTTTGGTTCTATTGATGTTCGTGGCTAGTTAGTACTGTTATTCGTTGGGATGATTTGGGAACTGGGTTTTGGAGAGAAGTGTTTGGATTTTAAGATTATTACTTAGTGATTCTGTGAGAACTTCTTTTCTTGCTGGGTGGAGGATGTGGGTCCTCTGGTTTGGATTCTTTGATTAAGTTCTCGAAGCATATTGTTGTTCTGATTCTCAAAAGATTGAGAGCTTTCTAGGTTGGTCTGAGAATGTCGGAATCTTCTTGTTTTTTTAGTTCTTGTTTGAACTCTCTGTCTCTGTCTCTTTCTCTCATTTTGACTATTTTCTGATCCTGAAAACTCATGATTCGTTCACATCGAGAAAAGGGGTCTTCAATTTTTTTGTTCTGGTGTTGGGTTCTGATTTGATTTTTATTTCTTACCAGTTCATAGACTCCATGATCTTTCATTATCTTCAAATCTTTCTACATGGACCCAATTAAGTTTTTTCCATTACGTGCCTCTACTCAGCTCCAGTTTAATTCTCTCTTAGAGGTTTATGGATAGAAATCTCTAAATCTGTCACTTGATATGGAAGTTTTAGGATTCTGTAATGGTTGCAAAGATTCTTTTAATGTTGCCCACTTCAAATTTTTTTTTCTTTGAAGATTCATTCTGCTGCTAAATTACCAATCATTCAATCTAGTTTGTCGTTGTGTTACAATCCTGTCACTAAATCCGTCCTTCTCAGGTGACTGGGTTCCGTGTTCTCTTGGTGCAAATTTTACGCCTCATATCATCACTGTCAATGCGGGCGAGGTAAAATGTCAAGAACTTATCTTCTTCACATAAGTTGGGGTAAAACCTGCGGTAGAGTTTTTTCTTCTTCTTTTTTCATATGGTTGATCAATAAAGAGACTAATATTCTTTTTCTCTTCACGTCTAATCCATTTCTGAAGTGGAATTTATAGGGGGGAAATCAAATTTATGTAAATAACTGTGAGAATAGATGAAAGTCTTGAAGTTTGGTTGTTTCATTTAGTCACTATTTGCTCCACTCCAAATAGGTAGTTTTCAATTTGTTAAAACAAAAGTGACTTAAAACACTCGTTTCTATTGAACTATTCTTGTGGTAAGTGAGTTAAGGAGCTGAGTCTTGTGATGTAGGGAAGGAAAAGAAAAAAAAAACGGTAACAAATTACACTTTCATCCATCCTTTTCTCTCATGTGACCAAGTTTTTCCTGTTTTGTAGGATGTCACAATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCAAACGGTGTAATCTCAAGTGTCACTCTCCGCCAGCCTGACTCCTCTGGAGGAACACTAACTTATGAGGTGATGCATTTATTTTGCCCTCTAATGAAAAAATGCCTAATTGAATGGTAATTCGGTTGTGTATGAATTCATGGACTTTGCAATGGTCTTTCCCCGTCTATTGGCTCTTGCTACCATGCTTTAGGATCCAGTACATAAATAACATGCCATTATTAGTTCCTGACAAAATATCGAAATTAAAAATTCGAACATTATAGATAAGAACAATTTGTATACGCAGACATCTATATGAAGCAGTTCTGAGAAATAGTACCATATATATTAATTATGGTTCAGAAATTTTTAAGTTGAATATTATGGAGGCTAAATTGAAATTTAATGAGCATTTATTGTCTACTTTTCTTTTAAAATCATGGCTTTCCAATTCTTAACATTACCTTCCTAACCTTGCACTAGGACATCGACATATATTTTACTGTTTCCGTCCTGCTCGTTGGGTTAAACCATCCTCTCTCTAACCTTCACGCCAGTCATAGCTAGATAGCTCTTTATTATTTCTTTCAGTTATCAACTCCTATAGGTGAAATGACTTCCAAGCATGTCTCTCTTGAGTTATCACTTTCATTCCTCAACAAAGAACCTTCATTTAAAATTTTGTGTAATGTAGCTAAATTTGAATTCGCTGCTTTCTTTTTTCAATTTTGGAATCTTCGATCTGTTCTATTATGTTTATGTTGTTCAACTCAGGCGGTTCAGTCAAGATGCAATCAGCCAATCCTGTTTAAGAGTTGATTCATGGGAGTACACTGAATACCTTAATGTTTATCCACATGTTTTAGGCAGTAAAAACTTTGGTCATAAGAGGCTATAACTGACGGTTCCAAATAATGGAAAAGAAACTCATTCAAATAGTAGCTTTCTTGCATTTTTGTATTTTTTGCTTCAGCACTGTGTTTTGAGCATCAGGCTCATTCGTTATTTTAATGAAAGTCTTGTTTTCGTTGCAAAAAAAGAATAGTAGCTTTCTTAAGGATTGGTGGGGTATATTCTTCAGATACCTGGTCATTAAAATGAATTTGCTAGTAAATATTGATTACAATAAAAGTTTCCATTTTGATAGTTTCAATCAGTCCAGCATTGCATAATCATTATTTTTCAAGTAATGCTGAAAGATTTCCTTTTCATTTCTTAATGCACCAGGTTGTTCTGAAAACCTCAAAGTTTTGCTTCTGATCTATGCCAAGAAAATCTCTCTGATTAATTGACTACCTTATATAAAGATTGTTCTTCTCGCATACTTCTCTGCTAAAACGTGGTGGATAGAGGATCAAGTAGAGGATTAGGATGCATGTTTTTCATCCATTTGCAAAATATATCTCATATCGATATTTTTCTCATTTGGTTCACAGGGACGATTTGAAATACTTTCCCTGTCCGGCTCATTCATGCCTAGTGACAATGGAGCAACAAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTAGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCTAGTCCTGTTCAGGTATGGTCTTTCTTTGTTTCTTCCACGCAATCAGTGATCCATTATCGATATGGCCAGATTGTATTTACTTTGCAAACAAAAGCTATGGAAACTAAGATTTCGCTTATTACTGTCTTTGCAAAAATAGGTTGTAGTAGGGAGTTTTCTATCAGGAAATCAACATGAACAGAAACCGAAAAAGCCAAAACATGATACTATCTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGTGTCGATCCTAAGTCCAACCTGTCACCTTCCAGTTCCTTTCGAGGCGATAACTGGTCGATGCTGCCAACTGATTCGAGAAATAAGTCAACTGATATCAATGTATCACTACCCAGTGCTTGATTTTTGAGCTCCATAGCTTATTATGGAAGTCTCCTCTCTCCCATTTTGCCATCATCAAACTTATTAATTGGTGGATGTTTCACATCTTGTTTCATGATCTCTGTAACTTACCATTGTACTTCCTATATGTAGAATTTTAAACCCCCACACTACTCCTGTTGATTCTTCTCAATTAGTTTTTCACTTGGTAGAGTAGCTATAGGCTCCCCGATGCTACTGCGTCGAGCCGAGTAGAATAGTTTGATGTAATGTGAACGACTTTCACTTTTTGTTTCATATCAATGGATTGTGATTTTATGCTTCCTTCTTTTTGTCCTTATCAACATCAGTCAACATGTCTGTCTCAAATTTTTGT

Coding sequence (CDS)

ATGCCTAGTGACAATGGAGCAACAAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTAGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCAGGAAATCAACATGAACAGAAACCGAAAAAGCCAAAACATGATACTATCTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGTGTCGATCCTAAGTCCAACCTGTCACCTTCCAGTTCCTTTCGAGGCGATAACTGGTCGATGCTGCCAACTGATTCGAGAAATAAGTCAACTGATATCAATGTATCACTACCCAGTGCTTGA

Protein sequence

MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA

Homology

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot
Match: Q8VYJ2 (AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-27
Identity = 76/119 (63.87%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQH-EQKPK 60
           MP+D+G TRSR+GGMSVSLASPDGRVVGGG+AGLLVAASPVQVVVGSFL+G  H +QKPK
Sbjct: 238 MPNDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPK 297

Query: 61  KPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDN--W-SMLPTDSRNKSTDINVSL 116
           K KHD +  + PTAAIPIS       +   SS   +N  W + L +D RNK TDINV++
Sbjct: 298 KNKHDFML-SSPTAAIPISSAADHRTIHSVSSLPVNNNTWQTSLASDPRNKHTDINVNV 355

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot
Match: O49658 (AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana OX=3702 GN=AHL2 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-21
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSG-NQHEQKPK 60
           MPSD+  TRSR+GGMSVSLASPDGRVVGGGVAGLLVAA+P+QVVVG+FL G NQ EQ PK
Sbjct: 218 MPSDSDGTRSRTGGMSVSLASPDGRVVGGGVAGLLVAATPIQVVVGTFLGGTNQQEQTPK 277

Query: 61  KPKHDTI-SPAPPTAAIPISCVDPKSNLSPSSSFRGDNWS-MLPTDSRNK-STDINVSL 116
              H+ + SP  PT++   +  D ++    +SS     W+   P+DSR+K S D N++L
Sbjct: 278 PHNHNFMSSPLMPTSS---NVADHRTIRPMTSSLPISTWTPSFPSDSRHKHSHDFNITL 333

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot
Match: Q4V3E0 (AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL7 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 62/126 (49.21%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHE-QKPK 60
           M ++N  ++ RSGGMSVSLA PDGRVVGGGVAGLL+AA+P+QVVVGSF++ +Q + QKP+
Sbjct: 191 METENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVGSFITSDQQDHQKPR 250

Query: 61  K------PKHDTISPAPPTAAIPISCVDPKSN---LSPSSSFRGDNWSMLPTDSRNKSTD 117
           K      P      P PP+   P + V   +N     P SSF   +W+      RN +TD
Sbjct: 251 KQRVEHAPAAVMSVPPPPSPPPPAASVFSPTNPDREQPPSSFGISSWTNGQDMPRNSATD 310

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot
Match: Q9FHM5 (AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL4 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSG----NQHEQ 60
           +PS++G TRSR+GGMSVSLA  DGRV GGG+AGL +AA PVQV+VGSF++G     Q +Q
Sbjct: 246 IPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSFIAGQEESQQQQQ 305

Query: 61  KPKKPKHDTISPAPPTAAIPI----SCVDPKS 85
           + KK + + +     T A  I    S  DPK+
Sbjct: 306 QIKKQRRERLGIPTTTQASNISFGGSAEDPKA 337

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot
Match: Q9LVB0 (AT-hook motif nuclear-localized protein 6 OS=Arabidopsis thaliana OX=3702 GN=AHL6 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MP++NG T+ R+GGMS+SLA P+G + GGG+AG+L+AA PVQVV+GSF+  +Q EQ  KK
Sbjct: 228 MPTENGGTKGRAGGMSISLAGPNGNIFGGGLAGMLIAAGPVQVVMGSFIVMHQAEQNQKK 287

Query: 61  PKHDTISPAPPTAAIP 77
                 + APP    P
Sbjct: 288 KPRVMEAFAPPQPQAP 303

[Close]

BLAST of Cucsat.G21389.T4 vs. NCBI nr
Match: XP_004147567.1 (AT-hook motif nuclear-localized protein 1 [Cucumis sativus] >KGN50187.1 hypothetical protein Csa_000512 [Cucumis sativus])

HSP 1 Score: 228 bits (580), Expect = 5.00e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. NCBI nr
Match: XP_038906607.1 (AT-hook motif nuclear-localized protein 1 [Benincasa hispida])

HSP 1 Score: 226 bits (576), Expect = 2.02e-71
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. NCBI nr
Match: XP_008437162.1 (PREDICTED: AT-hook motif nuclear-localized protein 1 [Cucumis melo] >KAA0042841.1 AT-hook motif nuclear-localized protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (576), Expect = 2.02e-71
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. NCBI nr
Match: XP_022159830.1 (AT-hook motif nuclear-localized protein 1-like [Momordica charantia])

HSP 1 Score: 207 bits (528), Expect = 4.43e-64
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MP+DNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQK KK
Sbjct: 220 MPNDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKTKK 279

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
            K DTIS APPTAAIPISCVDPKSNLSPSSSFRGDNWS+LP DSRNK TDINVSLPSA
Sbjct: 280 TKQDTISAAPPTAAIPISCVDPKSNLSPSSSFRGDNWSLLPNDSRNKPTDINVSLPSA 337

[Close]

BLAST of Cucsat.G21389.T4 vs. NCBI nr
Match: XP_022969838.1 (AT-hook motif nuclear-localized protein 1-like [Cucurbita maxima])

HSP 1 Score: 206 bits (525), Expect = 1.06e-63
Identity = 111/119 (93.28%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRN-KSTDINVSLPSA 118
           PK DT S APPTAAIPISCVDPKSNLSPSS FRGDNWS LPTDSRN K TDINVSLPSA
Sbjct: 273 PKQDTNSTAPPTAAIPISCVDPKSNLSPSSPFRGDNWSTLPTDSRNNKPTDINVSLPSA 331

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL
Match: A0A0A0KP42 (AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157940 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.42e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL
Match: A0A5A7TMP3 (AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003500 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 9.76e-72
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL
Match: A0A1S3ATC1 (AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103482669 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 9.76e-72
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
           PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA
Sbjct: 273 PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL
Match: A0A6J1DZW0 (AT-hook motif nuclear-localized protein OS=Momordica charantia OX=3673 GN=LOC111026134 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 2.14e-64
Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MP+DNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQK KK
Sbjct: 220 MPNDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKTKK 279

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 118
            K DTIS APPTAAIPISCVDPKSNLSPSSSFRGDNWS+LP DSRNK TDINVSLPSA
Sbjct: 280 TKQDTISAAPPTAAIPISCVDPKSNLSPSSSFRGDNWSLLPNDSRNKPTDINVSLPSA 337

[Close]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL
Match: A0A6J1I241 (AT-hook motif nuclear-localized protein OS=Cucurbita maxima OX=3661 GN=LOC111468921 PE=4 SV=1)

HSP 1 Score: 206 bits (525), Expect = 5.13e-64
Identity = 111/119 (93.28%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 60
           MPSDNG TRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK
Sbjct: 213 MPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKK 272

Query: 61  PKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRN-KSTDINVSLPSA 118
           PK DT S APPTAAIPISCVDPKSNLSPSS FRGDNWS LPTDSRN K TDINVSLPSA
Sbjct: 273 PKQDTNSTAPPTAAIPISCVDPKSNLSPSSPFRGDNWSTLPTDSRNNKPTDINVSLPSA 331

The following BLAST results are available for this feature:

BLAST of Cucsat.G21389.T4 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYJ2	2.5e-27	63.87	AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
O49658	4.5e-21	56.30	AT-hook motif nuclear-localized protein 2 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q4V3E0	1.5e-19	49.21	AT-hook motif nuclear-localized protein 7 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q9FHM5	1.6e-13	51.09	AT-hook motif nuclear-localized protein 4 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]
Q9LVB0	1.6e-13	52.63	AT-hook motif nuclear-localized protein 6 OS=Arabidopsis thaliana OX=3702 GN=AHL...	[more]

BLAST of Cucsat.G21389.T4 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147567.1	5.00e-72	100.00	AT-hook motif nuclear-localized protein 1 [Cucumis sativus] >KGN50187.1 hypothet...	[more]
XP_038906607.1	2.02e-71	99.15	AT-hook motif nuclear-localized protein 1 [Benincasa hispida]	[more]
XP_008437162.1	2.02e-71	99.15	PREDICTED: AT-hook motif nuclear-localized protein 1 [Cucumis melo] >KAA0042841....	[more]
XP_022159830.1	4.43e-64	92.37	AT-hook motif nuclear-localized protein 1-like [Momordica charantia]	[more]
XP_022969838.1	1.06e-63	93.28	AT-hook motif nuclear-localized protein 1-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G21389.T4 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP42	2.42e-72	100.00	AT-hook motif nuclear-localized protein OS=Cucumis sativus OX=3659 GN=Csa_5G1579...	[more]
A0A5A7TMP3	9.76e-72	99.15	AT-hook motif nuclear-localized protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3ATC1	9.76e-72	99.15	AT-hook motif nuclear-localized protein OS=Cucumis melo OX=3656 GN=LOC103482669 ...	[more]
A0A6J1DZW0	2.14e-64	92.37	AT-hook motif nuclear-localized protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1I241	5.13e-64	93.28	AT-hook motif nuclear-localized protein OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005175	PPC domain	PFAM	PF03479	PCC	coord: 12..48 e-value: 1.2E-7 score: 32.1
IPR005175	PPC domain	PROSITE	PS51742	PPC	coord: 1..69 score: 13.027884
None	No IPR available	GENE3D	3.30.1330.80		coord: 3..65 e-value: 8.9E-7 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..118
None	No IPR available	PANTHER	PTHR31500:SF77	AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR31500:SF77	AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN	coord: 83..117
None	No IPR available	SUPERFAMILY	117856	AF0104/ALDC/Ptd012-like	coord: 11..54
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 83..117
IPR039605	AT-hook motif nuclear-localized protein	PANTHER	PTHR31500	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	coord: 1..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G21389	Cucsat.G21389	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21389.T4.E1	Cucsat.G21389.T4.E1	exon
Cucsat.G21389.T4.E2	Cucsat.G21389.T4.E2	exon
Cucsat.G21389.T4.E3	Cucsat.G21389.T4.E3	exon
Cucsat.G21389.T4.E4	Cucsat.G21389.T4.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21389.T4.C1	Cucsat.G21389.T4.C1	CDS
Cucsat.G21389.T4.C2	Cucsat.G21389.T4.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G21389.T4	Cucsat.G21389.T4-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding