Cucsat.G19543.T19 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G19543.T19
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Auxin-responsive protein
Location	ctg4: 2001033 .. 2005389 (-)
RNA-Seq Expression	Cucsat.G19543.T19
Synteny	Cucsat.G19543.T19

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAATATAACATATCCAATTCCAATTCCAAGCCCCAAATCCCAAGTTCGTCCGTTCTCAAACAAACAAAAGAAAAACTCTCGATCTCAGCGATTTCACTACCAAAATCAAAGACAGAATTACAGAAAAAATTTCAATTCGAATTCGGAGAAAATGGAATCAGGGCAGAACGATGAGTACAGAGCGATCTTGATCAATTTCGAGCAGACGGAGCTTCGGCTTGGCTTGCCCGGCGGCGACGGCGGCGGTGGGAAGAGTAGTTTGGCGGGGAAGAGAGGGTTTATGGAAACTGTGGATTTGAAGCTTAATTTAGCTTCTTCAATGGCGTCGGCGAAGGAAGAGGCAACGAATTTGGAAGAGATTAAAACTTCTTCACAACAGCCTAATGATTTTGCTAAACCTCCGTCGAAGTAAATTTTCTTTCTCTCCTTTTCTCATTCATGTTTATGCTTAACTTATATTAGAAAAAATATCTCTTAATTTTCTTGTTTGATTTTAAAAATATGAATTTATGTTATTTTCAAATATATTTGAATGATCATATTTTATCTCATTTTTTAAAACTATTTTTAGAGAATTATTTAGATATATAGTATTATGAATGTCCTTTGTAAAGTTTAGAGTATTTTTCATATCTATAATCTATATATTGAGTGAAAATCAATAGAATTTGAGTTATTAAGAACTAATTTTTTGCTTTATTAAGATACAAAAAAATTGATTTGTTTCAAAAGGGTAAAATTAAAATTAAAATTATAATAGCATCAACTTTGTTTCTTTTTCTTTTTCTTTTTTTTTAAAAGCACATTAACTTTGTATTTTCTTTGTTATATATATAAAAAGTCCATTTACATAGAGTTCAATTGCCATTAGTCTTAGGAAAATAAAAGGTGATTCGTAAATTTTCTTTTATTCTATGGTTAACTAATTAAAAATGTTTAGCCATTTCTACTTCTATTTTGTTTTATTGTCATTTCCATTTTAGTTATAGAATTAAAGTGAGAAACTTAAATTTTTTAGTTCATTATTGATTTAACTTAGTAATATATATTCAAATTCTTGATATCAAAATGGTATTTTAATCATATGTGAAGCGTGATTATATTATAAAACAATTTGATGAATTAGTGTCAATCTAAAAATTTAAATCTTTTGATCTTCAAAGCTTCGTTTTTGTTTTTAAATTCATATATTTATATCAATTATTTAAAAATATTTTTCTTTTTCCCACTTGCTTGCCATTGTTAAAAAATAATCTAAGAGATATTATTTTTTTTTACTGATAAAATTTCCATTTCAAGACTAATAATAAACGGTACAAGAACATTTTTAAAAAACAAGAATTATAACAAAATTTATGAATGAAACTTCTATCGGTAATAAATTTTATAATAAGTGAAATTTAAATTTTGCATATTAAATCTAAATATTATATATATAACTCCCCACTCGAATATATATTTATATATAGAGAGAGAATGATTGTTGAAGATGATTGAAAAGGAGTTATTGGGATTATAAAAAAAAAAAGAAAAAGAAAAGGTTAAGATGACCTTAGAACACAACAAAGGTTAGAGAAGTTTGAATGCTTCGGTTGGTTGGTTGTCGGGAAAATTATGCAAAATTACAAAACATAACGAATCTTTTGCTTTTTTTCTCACCAACCAAACATTCAACAAAAAACTTAAGTGTTTACTCCTAAAATAGAATTGCTTATAAATTGACTTTTTCTTTAATTACAAAATTAATATCTTCAACTCTAAAATTAATCAAGATTCAAAAAAAGGAAAAATGATCCATTACTTCATTATATATTTTATTTGAGAAAAAAAAAAGATTTTGAAAGGAATTATATTTTGGTTGTTAAGGTTTCATTACATAACCATTTCACTTTTAACTTCTAAAATTAAGTTTATAAACACTATTTTCACTTATAAATATATTTTTAGTTATGTTATTAAAAATCAAGCTCAAATTTGAAAATTATAGAAGACAAAAGGTTGTTTTCAAAAGATTTACAAATATAACAATATATCAATTGTGTATAGACTGTTTATATTTGTAAATATTTTTAGTAGATTTAGTTGAGTGTATTTGATTTTTATAATAAATTTAGATTGGAGTTAACGATTCAAACACAATTGAAGAGAGTTTTATGAATACATGTCTATTCACGATCATGGATGGGCCGATTGGATATGGCCCAAGCTCGGTCTAGGGCTAGGCCTCCCGGTGACTCAAGTGTCAACCCTTGGAAGGCTTGAACTTAAGTCATTGGATGATAATTTATTGGGAAGAAGTTAGTTGAGGTAATTTGAAGTTTGGTTAAATTGATAACAGAGCACAAGTAGTGGGTTGGCCACCAGTACGATCATCTCGAAAGAATTTAGGAGTAGTGTCGTCAAGGAAGGGGGGAGATGAGGGCGGGGCCGGGGGGTCGTTCGTAAAAGTAAGCATGGACGGTGCTCCTTATTTACGGAAGGTGGACTTGAAGTTATACGCCAGCTATAAGGAACTCTCTCATGCTCTTGCTCAAATGTTTAGCTCCTTCACCATTGGTAATCAATTTTTTTCCTTTTTCTTTTTCTTTCATATGGACAATCAGAGTCAATATCTATACATGTTTTACTGCTTTTATGTACGTTTTATAAATTTAATAATAATCAAGCTTTTCATGTGCAAACTTTTGATATTATTTATTTCTGGCACAATAATTTTATTTCTTTTTCTAGTTTAGATTCTAAAAGATTTGGTTAAATATTTTATTTTCAATGCGCAGGTTTTTTTTATGAATCTTTTAACATTAAAACTAAGTTATAATACATAAATTGGGAGTAGGAAAAAATCCAAATTAAAGCTTACTGTATACTTGATACTACATATTGTAGGGTTGACATTACATTACATGCTTCTTTTTAAACATTTTGGCTTAATTCTTATGTTTTTTTCTTTTAATAGTTTAAACGGGTAAGGGATATACTATTGGTTATGAGGTTATTTGTTTGAATCTTTGGACACATCTATTTTTACCCATGATGTAAAAATAAAACATGGTATTTTGTCCATTGTTTGGAGTTTGATATTCGAAAGAAAAATGGAAGGGGTTTGATGAATTTTTGAAAAAATTATTGTAAATGATGAATTTTTTATAATAAAATATCTAGAAATCTGTCAATATATATATATATATATATATATTTGAAAATGCACATAAATTATTTGAGTAATATATATTTTGAGATGGGAATTGACAGGAAAGTGTGAATCAGAAGGGATGAAGGATTTCATGAATGAAAGCAAATCAGTAGACCTTTTGAATGGGTCAGAATATGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTCGTTGGGGATGTCCCATGGGAGTAAGTATTATAATCAATTTTCATTCATTGTGCTTTACAAAGTATAACTAAATGTCATGTTAATTTGACATAGGATGTTTGTTGATTCATGCAAACGTTTGAGGATCATGAAAGAGTCTGATGCCATTGGATTAGGTAAGTCATCATCTTCTACTGTTTAAAATTAGGTAAACTATATCTCTCTCGTTTATGTATAAACAACATTTAGAAAAAATAATTGATTAAATGGTAAATTTGATCCCTATAGTCTACAAAAAGAAAAATAGTTAGAAATTCAAATCAATTTATACTTAAAATTTAGTCCTATTATTTTTAAAATTTTATTGAATCATAATAATTAAATTTTAACTTTCTTTCTACACTAAATATGTAATTTAATAAAAAGTAACTTTGATTTTTTTTTTAAAAATACAATGGGCTCAATATTTAATGTTATCACAATAGATTGCATGAAAAAGATAAATAAAAGAATATAAAGTTATCTATACATATACATATACATATGTGTTAATGTGTACATATTTTCTTTTGGATATATCTTCTTGATTTTTTAAATTATTTTCCACATACTTTCTTTAGGATCTATCTTCTGATTTTTTTTTAAATAATTATTTAATCATTGACAGCACCAAGATCAATGGAGAAACAAAAGAACAACAGAAGCTGAGCTGTTTTTGTCAATTTAACAATTTGTTTGATATGGTACCAATTTTCAATTTTTTCTTCTTCTAAATTAATATAATATATCTATATATATAAGAACAATTGGTGTTGAATTTGTAGGGATGCTATATAAATTCAACATTAGCATAGAGTGGTTTTAATTTCTACTTCAAACTTTAATTTCTCCCATCTCTATATTGCATTATTTTATGATAATCATCTTGACGTATTCATTGGTGTACGTACATATATAAGTAATATCTACATATCTATCTATATATTATTAATAGACATAATTCGTTGT

Coding sequence (CDS)

ATTAATATAACATATCCAATTCCAATTCCAAGCCCCAAATCCCAAGTTCGTCCGTTCTCAAACAAACAAAAGAAAAACTCTCGATCTCAGCGATTTCACTACCAAAATCAAAGACAGAATTACAGAAAAAATTTCAATTCGAATTCGGAGAAAATGGAATCAGGGCAGAACGATGAGTACAGAGCGATCTTGATCAATTTCGAGCAGACGGAGCTTCGGCTTGGCTTGCCCGGCGGCGACGGCGGCGGTGGGAAGAGTAGTTTGGCGGGGAAGAGAGGGTTTATGGAAACTGTGGATTTGAAGCTTAATTTAGCTTCTTCAATGGCGTCGGCGAAGGAAGAGGCAACGAATTTGGAAGAGATTAAAACTTCTTCACAACAGCCTAATGATTTTGCTAAACCTCCGTCGAAATTGGAGTTAACGATTCAAACACAATTGAAGAGAGTTTTATGA

Protein sequence

INITYPIPIPSPKSQVRPFSNKQKKNSRSQRFHYQNQRQNYRKNFNSNSEKMESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSSLAGKRGFMETVDLKLNLASSMASAKEEATNLEEIKTSSQQPNDFAKPPSKLELTIQTQLKRVL

Homology

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot
Match: O24407 (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-09
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 64  LINFEQTELRLGLPGGDGGG---GKSSLAGKRGFMETVDLKLNLASSMASAKEEATNLEE 123
           +INFE TELRLGLPGG+ GG   GK++  GKRGF ETVDLKLNL SS A       +LE 
Sbjct: 1   MINFEATELRLGLPGGNHGGEMAGKNN--GKRGFSETVDLKLNL-SSTAMDSVSKVDLEN 60

Query: 124 IKTSSQQPNDFAKPPSKLEL 141
           +K          KPP+K ++
Sbjct: 61  MK------EKVVKPPAKAQV 71

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot
Match: P93830 (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 62  AILINFEQTELRLGLPGGDGGGGKSSLAGKRGFMETVDLKLNLASSMASAKEEATNLEEI 121
           ++ +N  +TEL LGLPGGD     +    KRGF ETVDLKLNL +  A+ KE +T  + +
Sbjct: 4   SVELNLRETELCLGLPGGDTVAPVT--GNKRGFSETVDLKLNLNNEPAN-KEGSTTHDVV 63

Query: 122 ----KTSSQQPNDFAKPPSKLEL 141
               K  S  P D AKPP+K ++
Sbjct: 64  TFDSKEKSACPKDPAKPPAKAQV 83

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot
Match: P0C132 (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 67  FEQTELRLGLPGGDGGGGKSSLA-----GKRGFMETVDLKLNLASSMASAKEEATNLEEI 126
           FE TELRLGLPGG G G  ++ A     GKRGF ET+DLKL L  + A+A ++  + EE 
Sbjct: 7   FEATELRLGLPGGGGDGDAAAAAARSSSGKRGFAETIDLKLKLEPA-AAAVDDDDDKEEA 66

Query: 127 KTSSQQ--------PNDFAKPPS 137
               ++         ND A PP+
Sbjct: 67  AADDREKKVDIVGADNDDASPPA 88

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot
Match: A2XLV9 (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 70  TELRLGLPGGDGGGGKSSL-AGKRGFMETVDLKLNLASS----MASAKEEATNLEEIKTS 129
           TELRLGLPGG GG  +++  A KRGF ET+DLKL L ++     A+ K EA   E+ K  
Sbjct: 10  TELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRP 69

Query: 130 SQ-QPNDFAKPPS 137
           ++    D  KPP+
Sbjct: 70  AEAAAADAEKPPA 82

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot
Match: Q10D34 (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA13 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 70  TELRLGLPGGDGGGGKSSL-AGKRGFMETVDLKLNLASS----MASAKEEATNLEEIKTS 129
           TELRLGLPGG GG  +++  A KRGF ET+DLKL L ++     A+ K EA   E+ K  
Sbjct: 10  TELRLGLPGGGGGAAEAAAKAAKRGFEETIDLKLKLPTAGMEEAAAGKAEAPAAEKAKRP 69

Query: 130 SQ-QPNDFAKPPS 137
           ++    D  KPP+
Sbjct: 70  AEAAAADAEKPPA 82

[Close]

BLAST of Cucsat.G19543.T19 vs. NCBI nr
Match: XP_011648754.1 (auxin-responsive protein IAA16 [Cucumis sativus] >KGN60808.1 hypothetical protein Csa_019407 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 3.03e-47
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSSLAGKRGFMETVDLKLNLASSMASA 111
           MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSS AGKRGFMETVDLKLNLASSMAS 
Sbjct: 1   MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSSSAGKRGFMETVDLKLNLASSMAST 60

Query: 112 KEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           KEEATNLEEIKTSSQQPNDFAKPPSK ++
Sbjct: 61  KEEATNLEEIKTSSQQPNDFAKPPSKAQV 89

[Close]

BLAST of Cucsat.G19543.T19 vs. NCBI nr
Match: KAA0063606.1 (auxin-responsive protein IAA16 isoform X2 [Cucumis melo var. makuwa] >TYK18421.1 auxin-responsive protein IAA16 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (379), Expect = 3.23e-44
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSK 137
           AKEE TNLEEIK+ SQQPNDFAKPPSK
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSK 87

[Close]

BLAST of Cucsat.G19543.T19 vs. NCBI nr
Match: XP_008455992.1 (PREDICTED: auxin-responsive protein IAA16 isoform X2 [Cucumis melo])

HSP 1 Score: 151 bits (381), Expect = 1.22e-42
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           AKEE TNLEEIK+ SQQPNDFAKPPSK ++
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSKTQV 90

[Close]

BLAST of Cucsat.G19543.T19 vs. NCBI nr
Match: XP_008455985.1 (PREDICTED: auxin-responsive protein IAA16 isoform X1 [Cucumis melo])

HSP 1 Score: 151 bits (381), Expect = 1.41e-42
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           AKEE TNLEEIK+ SQQPNDFAKPPSK ++
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSKTQV 90

[Close]

BLAST of Cucsat.G19543.T19 vs. NCBI nr
Match: XP_038890917.1 (auxin-responsive protein IAA16-like [Benincasa hispida])

HSP 1 Score: 145 bits (365), Expect = 2.84e-40
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGG---GGKSSLAGKRGFMETVDLKLNLASSM 111
           MESGQNDEYRAILINFEQTELRLGLPGGDGG   GGKSS AGKRGFMETVDLKLNL+ +M
Sbjct: 1   MESGQNDEYRAILINFEQTELRLGLPGGDGGEVNGGKSSSAGKRGFMETVDLKLNLSCTM 60

Query: 112 ASAKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           AS KEE TNLEEIK SSQ+ NDFAKPPSK ++
Sbjct: 61  ASVKEEPTNLEEIKNSSQRSNDFAKPPSKAQV 92

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL
Match: A0A0A0LG78 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G010920 PE=3 SV=1)

HSP 1 Score: 163 bits (412), Expect = 1.46e-47
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSSLAGKRGFMETVDLKLNLASSMASA 111
           MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSS AGKRGFMETVDLKLNLASSMAS 
Sbjct: 1   MESGQNDEYRAILINFEQTELRLGLPGGDGGGGKSSSAGKRGFMETVDLKLNLASSMAST 60

Query: 112 KEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           KEEATNLEEIKTSSQQPNDFAKPPSK ++
Sbjct: 61  KEEATNLEEIKTSSQQPNDFAKPPSKAQV 89

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL
Match: A0A5D3D4G0 (Auxin-responsive protein IAA16 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001470 PE=4 SV=1)

HSP 1 Score: 150 bits (379), Expect = 1.56e-44
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSK 137
           AKEE TNLEEIK+ SQQPNDFAKPPSK
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSK 87

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL
Match: A0A1S3C1R6 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496046 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 5.93e-43
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           AKEE TNLEEIK+ SQQPNDFAKPPSK ++
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSKTQV 90

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL
Match: A0A1S3C1R1 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496046 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 6.82e-43
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGGGG-KSSLAGKRGFMETVDLKLNLASSMAS 111
           MESG+NDEY AILINFEQTELRLGLPGGDGGGG KSS AGKRGFMETVDLKLNLASSMAS
Sbjct: 1   MESGKNDEYSAILINFEQTELRLGLPGGDGGGGGKSSSAGKRGFMETVDLKLNLASSMAS 60

Query: 112 AKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           AKEE TNLEEIK+ SQQPNDFAKPPSK ++
Sbjct: 61  AKEEGTNLEEIKSCSQQPNDFAKPPSKTQV 90

[Close]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL
Match: A0A6J1G2X6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450302 PE=3 SV=1)

HSP 1 Score: 144 bits (362), Expect = 4.85e-40
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 52  MESGQNDEYRAILINFEQTELRLGLPGGDGG---GGKSSLAGKRGFMETVDLKLNLASSM 111
           MES QNDEYRAILINFEQTELRLGLPGGDGG   GGKSS A KRGFMETVDLKLNL+SSM
Sbjct: 1   MESEQNDEYRAILINFEQTELRLGLPGGDGGDTSGGKSSSAAKRGFMETVDLKLNLSSSM 60

Query: 112 ASAKEEATNLEEIKTSSQQPNDFAKPPSKLEL 140
           A  KEEATNLEE K+SSQ+PNDFAKPPSK ++
Sbjct: 61  APEKEEATNLEETKSSSQRPNDFAKPPSKAQV 92

The following BLAST results are available for this feature:

BLAST of Cucsat.G19543.T19 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24407	6.6e-09	52.50	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=...	[more]
P93830	3.1e-06	44.58	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=...	[more]
P0C132	6.8e-06	43.37	Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30...	[more]
A2XLV9	2.6e-05	46.58	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 P...	[more]
Q10D34	2.6e-05	46.58	Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA13...	[more]

BLAST of Cucsat.G19543.T19 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648754.1	3.03e-47	94.38	auxin-responsive protein IAA16 [Cucumis sativus] >KGN60808.1 hypothetical protei...	[more]
KAA0063606.1	3.23e-44	91.95	auxin-responsive protein IAA16 isoform X2 [Cucumis melo var. makuwa] >TYK18421.1...	[more]
XP_008455992.1	1.22e-42	88.89	PREDICTED: auxin-responsive protein IAA16 isoform X2 [Cucumis melo]	[more]
XP_008455985.1	1.41e-42	88.89	PREDICTED: auxin-responsive protein IAA16 isoform X1 [Cucumis melo]	[more]
XP_038890917.1	2.84e-40	83.70	auxin-responsive protein IAA16-like [Benincasa hispida]	[more]

BLAST of Cucsat.G19543.T19 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG78	1.46e-47	94.38	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G010920 PE=3 SV=1	[more]
A0A5D3D4G0	1.56e-44	91.95	Auxin-responsive protein IAA16 isoform X2 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C1R6	5.93e-43	88.89	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496046 PE=3 SV=1	[more]
A0A1S3C1R1	6.82e-43	88.89	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496046 PE=3 SV=1	[more]
A0A6J1G2X6	4.85e-40	83.70	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450302 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..53

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G19543	Cucsat.G19543	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19543.T19.E1	Cucsat.G19543.T19.E1	exon
Cucsat.G19543.T19.E2	Cucsat.G19543.T19.E2	exon
Cucsat.G19543.T19.E3	Cucsat.G19543.T19.E3	exon
Cucsat.G19543.T19.E4	Cucsat.G19543.T19.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19543.T19.C2	Cucsat.G19543.T19.C2	CDS
Cucsat.G19543.T19.C1	Cucsat.G19543.T19.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19543.T19	Cucsat.G19543.T19-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding