Cucsat.G19154.T9 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G19154.T9
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	upstream activation factor subunit spp27-like
Location	ctg3517: 35469 .. 39391 (+)
RNA-Seq Expression	Cucsat.G19154.T9
Synteny	Cucsat.G19154.T9

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTCTGACCCGCCAAAGGAAAGGTGGGGTTCTTTTGGTTTTTTCAATTTTGGGGTTTTGGGTTTCTTTTATTTTTTTTAGTTGCCCTCTTTGATTTACTTATTGTTCGTCTTGGGTGTGTATGTTTGTGTAAATCTGTTTCAATTCTGGAGTGAAGTTGATTTCGTTCTGTTTTGATTGCAATTCTACAGAATTAGTGGAATGGCTTCTCGATTTCTTTGCTTATTCCTTTTCCTTTTTGCAACGGTTACTTCATTCGTTCAGAATTAGGTCGGAAAAGGCAGTGAAGTTGTTCGTTTACTTGCTGTGGACTTTGTTTGGAGGATTTTGGAGTGTAGAGTTCACTGATTAGTGGCATTTGGGTTGGTCTTAGTTTTACTCGAGGGTTTATTGTTAATTTTCCCTTGAGTGTTGACTAGGTTCTGCTTCGTTTTCCTCTGGGTTGAGAAGTTTATTCAGGATTTCTGGTCAGAAATGTGACTTTCTGCTTTTGTCGTGGCTGTTGGAAAAGTAAATTTTCTCTTAATGATGCCTTGTCAAATGTGTGTGCATAGGTATCTACTACGAGCATGCTGAGTTTTCATTTATTTTCTGGTTGTTTCCTTTAATTCGTATTATTTTTGCATTCTTGGTTCTAGTCTGGTCAGCACAGCCAGATACCATATGCGGAAAAAAAAATCTTGGGAATTTGTAACTTTGGATTTGTCCATCAGCATGGTAGTGGATTGGTAGGGAGTTAATAAAATGAGAGATGGAAGCTACCCTAGTTTACTGGAAATGGATATTAATGTATGGCATCTACATGTGAGGAGTCTTTATCGTATGCATACATTTTTCTATAAATATCACTGTAGCTTTGACCTCTCAGCACACTTTTGAAAGTGAACGGCTAGCTCCTTCCCAGTCTGGGCTTACTTTTATTTTGCAATCTAGTAATGTATGTAGCTTCGAGCTTGTAATCTCATGATTTCAATGGCCTTACTAGTGATACCTTTTTAAGTATCGATTACCAGCTGGTAGCCATAAGTATGGAACACTTTGTTGTGTACTATAGAGCTACGAAGTAGAATCTTTCAATTAGTTTTCATTCCATGGAAGGGTGAAATGTTTCATTTACTGTTTTATTCAAAGATTAAAATAATACACGTCTCTCTAGTTCTTAGATCCCAAAGATATATGTTTCGACTGATAAAAGCTCACCTTTAAAACTTGAAAGCAGTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCCGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAGCCAGAATTACCGCGAACTGAGGTTTCTATCTCTTTCTTATTTCGTAGTTGTTTGATTCTCAATTTTAGCACTTTATGAGGTTCATATGATGCATCTGTGTTTGTTTCAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGCTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTGGCCAAACACATCATTCCTCTTGAACCTACAAGTAAGTATTCAGTTTGATGCTTCCCTGTCCCCCTAGTTCTGGAAGAAACCAATAGTTTATTTTCTAATCCTGTCAGAACCATCAAGTTCTAAGAAGGCACGAGTGGAGAATGAATCCGCAGTTAGTGTTAAAAGTGCAGAACCCAGTATTTGTCCTTCTGTGATTATATCTGAAGCACTAGCAAATTTTTTTGGCGTTGATGGTAGGGAGATGCTCCAATCAGAAGTTCTGAGACGCATCTGGGAATACATAAAAGTGAATCATCTTGAGGTTGGCAAATAAACTCTGGAAACTTTCACTTTGTTGCATGCTAGCCATTCACTATTAATACCATCTTTTCAACTTGAGAGATCATTTCTTTGTAAAAATTATGCATACAGGACCCTCTGTAATGGATCTTAAAACATGGGGCATTGTTCTCATATGTCAGATTAACTGTTTTTTCTTCATTAAAATGATCTTGTACTCACATGTCTTGGATCTTAAAAACAGGACCCTCTGAACCCGATGGCGGTGTTGTGCGATGCAAAACTTCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCGTGATAGCTATTCTTCTAGGATGGTTAGTGCATTCTAACTTTCTTATATGTTAAAACTGATGTTAGAGTTGAAGGGTAATTTTGAGTTTCCCCATTGTTGCAATTTGACCTCCTTGCCGGCTTCATCATCATGCACGTTTTCCAAAAACATATTATTTGATTGATTGAAATTTCTTCTAGTGTTGGAGGCTGCTGATTGATAACCTGTTATCACTTGTCCTAGTTGGAAATTTATGATGCAGTATGCAGGATAGTTATAAGAAAATTATTGATATCTTCTTAGGATTAAATATATGAGAGTTTTGGGGATTTTGTCTTAGTTTTATGATGGGTCTGTGGGAACCTTCAATTGGATTCTGTTCTTGTACCATTTGCTGGGATTGATGGCAGGATAAAGAAAAAATGAAAGGAAAAACTGTCGAATTGATTATTACCTCATTTAAATTCACCCAGGACTCTGAAGTTGAAACAAACACAAGCCCTGAAATGGAAAATGTTTACTTGAAACTGATTATTTTGTTTTTGTGCCATATGGAAAGGATAAAAAACCTAAGGTAATAAACTAGGACTTGGAAATTCAGTTAGAAATAGAAAGTCAAGTCAAAGATTAGTGATTTGGAGGTCTCTTATTTATTTTGGTCTCCACAAATCAAATCTGAAAATTTAGTATATGGAATGTATTCTTGTACAAAGTTTTCTTTTTGAGTTCATAGATGCCTTATTTGATTATCTGTAAATGAAGACACAATGATTTGAAGCTTTATTTTGTGCAATCATAGCTTTTCACCCTTGAGGCCCCGTTTAATAATAATTTGGTCCTTCAAAATTAAGTTTATGAATTAAGCTTTTAAATGTTATTCCCACCAATGAGTTCCATTATTTTGTTATATACTTCTCCAAATATTTTCAAATCCAAGCCAAATTTTACAAAACTTGATTTTGTTTTTAGAATTTGATCTTTAGAATCTAATTATTTGTTTAAGAGAGATAAAGTCCAATTTTCAAAATCCAAAAACTAAAACTAAAATTATAATCAAATGGGCCCTTGGTTATTTGAATTTCAATTGACGGTTGTTTTCTTTTTTTCCTTTTCTTCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAACCGAAGGGATTACCTTCTTTCTGACCGCTTTTTCCAGCAGTGCCAGCTGTGCTCCATACTTGCTTTACCTTTGGTTGAAGAATTTGTTTCATTTTCTTTTTCTTTTTCAAAAGCATCAAAGAATGGAATAGCCAGGACAAAACTAATGAGTGCTGATCCTTGATTGCAGTTGCAGATCGAATGGTGTTAGCGACTTACATATTGGGACAGTGTTTGGAAAAGTCTATATGGTTTTTTCTCCCCCTTCTCTTAATGTTGTAATCAGTGATGATAATATTTTACTTTTGGATCTTATGCTAAGGTAAGGTGTGAACTTGGGGATGTAAGAATGGGGGCTTATGGCAGAGTTTATTTTGTAATTGTCTGCCAAGTCCTTGGGTTTTCATTTGTCTGACTTGGTGTTTAGGTTTAGAGTAACCCCTGGGAGTTTCTAACATCCATCATACACTACAGATGATGATGGGTAAAGTAAAATTATGTTATCTACTCACTAGTTTGTTAAATATATCTATCTATATATATATATATATATATGTATGATGTTTTTATTTAGTAAAAAGTTTAGCCTTCTTTACTTCCA

Coding sequence (CDS)

ATGATGCCTTGTCAAATGTGTGTGCATAGTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCCGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAGCCAGAATTACCGCGAACTGAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGCTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTGGCCAAACACATCATTCCTCTTGAACCTACAAAACCATCAAGTTCTAAGAAGGCACGAGTGGAGAATGAATCCGCAGTTAGTGTTAAAAGTGCAGAACCCAGTATTTGTCCTTCTGTGATTATATCTGAAGCACTAGCAAATTTTTTTGGCGTTGATGGTAGGGAGATGCTCCAATCAGAAGTTCTGAGACGCATCTGGGAATACATAAAAGTGAATCATCTTGAGGACCCTCTGAACCCGATGGCGGTGTTGTGCGATGCAAAACTTCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCGTGA

Protein sequence

MMPCQMCVHSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSICPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGCESISALGIPEVLGRHHIFRRS

Homology

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 14  KTKRRGGPGG--LNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKII 73
           K KR   P    LNK   +SP+L   +G  +L R + VK+LW YI+ ++LQDP++KR I+
Sbjct: 105 KRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTIL 164

Query: 74  CNDELRLVFETDCTDMFKMNKLL 95
           C+D+L+ VFE D   MF MNK L
Sbjct: 165 CDDKLKSVFEVDTLHMFTMNKYL 187

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-13
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 30  VSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFK 89
           +S  LQ  +G  ELPRT++VK +W YI++++LQ+P ++R+I+C++++  +F    T MF 
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKKMT-MFS 185

Query: 90  MNKLLAKHII-------PLEPTKPSSSKKARVENES 119
           MNKLL KH+          E  K +  K+ ++ENES
Sbjct: 186 MNKLLTKHLFNPDEIVKHEEEQKQTPEKEIKLENES 220

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.7e-13
Identity = 36/78 (46.15%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 30  VSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFK 89
           +S  L +++G+ EL RTE+V++LWAYI+ +NLQ+P+NK++I+C+++L L+     T+MF+
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKS-TNMFE 185

Query: 90  MNKLLAKHIIPLEPTKPS 108
           M+K+LA H+   EP K S
Sbjct: 186 MHKILASHM--TEPKKIS 200

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 31/112 (27.68%), Postives = 50/112 (44.64%), Query Frame = 0


Query: 9   HSTQTKTKRRG----GPGGLNKLCGV-------------SPELQAIVGQPELPRTEIVKQ 68
           H T T  +  G     PG +N  C V              P L  ++G     R  I++ 
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318

Query: 69  LWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEP 104
           LW YI+ + LQDP  +  +IC+  L+ +FE+      ++ + L   ++P EP
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot
Match: Q96GM5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens OX=9606 GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.8e-04
Identity = 31/112 (27.68%), Postives = 50/112 (44.64%), Query Frame = 0


Query: 9   HSTQTKTKRRG----GPGGLNKLCGV-------------SPELQAIVGQPELPRTEIVKQ 68
           H T T  +  G     PG +N  C V              P L  ++G     R  I++ 
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318

Query: 69  LWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEP 104
           LW YI+ + LQDP  +  +IC+  L+ +FE+      ++ + L   ++P EP
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP 370

[Close]

BLAST of Cucsat.G19154.T9 vs. NCBI nr
Match: XP_004150254.1 (angiomotin isoform X2 [Cucumis sativus] >KGN44294.2 hypothetical protein Csa_015454 [Cucumis sativus])

HSP 1 Score: 404 bits (1038), Expect = 8.93e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 142 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 201

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 202 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 261

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 262 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 321

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 322 ESISALGIPEVLGRHHIFRRS 342

[Close]

BLAST of Cucsat.G19154.T9 vs. NCBI nr
Match: XP_031744592.1 (angiomotin isoform X1 [Cucumis sativus])

HSP 1 Score: 404 bits (1038), Expect = 9.24e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 143 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 202

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 203 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 262

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 263 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 322

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 323 ESISALGIPEVLGRHHIFRRS 343

[Close]

BLAST of Cucsat.G19154.T9 vs. NCBI nr
Match: XP_008447697.1 (PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >XP_008447700.1 PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >KAA0048155.1 box A-binding factor isoform X2 [Cucumis melo var. makuwa] >TYK08100.1 box A-binding factor isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 404 bits (1038), Expect = 9.24e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 143 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 202

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 203 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 262

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 263 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 322

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 323 ESISALGIPEVLGRHHIFRRS 343

[Close]

BLAST of Cucsat.G19154.T9 vs. NCBI nr
Match: XP_038900174.1 (uncharacterized protein LOC120087296 isoform X2 [Benincasa hispida])

HSP 1 Score: 399 bits (1026), Expect = 4.53e-138
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 134 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 193

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAV VK AEPSI
Sbjct: 194 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVGVKGAEPSI 253

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCD KLRELFGC
Sbjct: 254 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDGKLRELFGC 313

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 314 ESISALGIPEVLGRHHIFRRS 334

[Close]

BLAST of Cucsat.G19154.T9 vs. NCBI nr
Match: XP_038900172.1 (uncharacterized protein LOC120087296 isoform X1 [Benincasa hispida] >XP_038900173.1 uncharacterized protein LOC120087296 isoform X1 [Benincasa hispida])

HSP 1 Score: 399 bits (1026), Expect = 4.69e-138
Identity = 198/201 (98.51%), Postives = 198/201 (98.51%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 135 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 194

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAV VK AEPSI
Sbjct: 195 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVGVKGAEPSI 254

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCD KLRELFGC
Sbjct: 255 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDGKLRELFGC 314

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 315 ESISALGIPEVLGRHHIFRRS 335

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL
Match: A0A0A0LEG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G758990 PE=4 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 4.32e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 142 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 201

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 202 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 261

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 262 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 321

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 322 ESISALGIPEVLGRHHIFRRS 342

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL
Match: A0A1S3BI07 (uncharacterized protein LOC103490111 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490111 PE=4 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 4.48e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 143 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 202

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 203 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 262

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 263 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 322

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 323 ESISALGIPEVLGRHHIFRRS 343

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL
Match: A0A5D3C9T5 (Box A-binding factor isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002610 PE=4 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 4.48e-140
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 143 STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 202

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI
Sbjct: 203 IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 262

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC
Sbjct: 263 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 322

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 323 ESISALGIPEVLGRHHIFRRS 343

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL
Match: A0A6J1CGF4 (uncharacterized protein LOC111010586 OS=Momordica charantia OX=3673 GN=LOC111010586 PE=4 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 3.95e-135
Identity = 194/210 (92.38%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MMPCQMCVHSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNN 60
           + P      STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNN
Sbjct: 129 LAPSDPPKESTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNN 188

Query: 61  LQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAV 120
           LQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENES +
Sbjct: 189 LQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESGI 248

Query: 121 SVKSAEPSICPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCD 180
            VK AE SICPSVIISEALA FFGVDGREMLQ+EVLRRIWEYIKVNHLEDPLNPMAVLCD
Sbjct: 249 GVKGAESSICPSVIISEALAKFFGVDGREMLQTEVLRRIWEYIKVNHLEDPLNPMAVLCD 308

Query: 181 AKLRELFGCESISALGIPEVLGRHHIFRRS 210
           AKL+ELFGCESISALGIPEVLGRHHIFRRS
Sbjct: 309 AKLQELFGCESISALGIPEVLGRHHIFRRS 338

[Close]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL
Match: A0A6J1J2D3 (uncharacterized protein LOC111480626 OS=Cucurbita maxima OX=3661 GN=LOC111480626 PE=4 SV=1)

HSP 1 Score: 388 bits (997), Expect = 6.51e-134
Identity = 190/201 (94.53%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 10  STQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 69
           STQTKTKRRGGPGGLNKLCGVSPELQ IVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK
Sbjct: 138 STQTKTKRRGGPGGLNKLCGVSPELQTIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRK 197

Query: 70  IICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKARVENESAVSVKSAEPSI 129
           IICNDELRLVFETDCTDMFKMNKLLAKHII LEPTKPSSSKKARVENE A++VK+AEPS+
Sbjct: 198 IICNDELRLVFETDCTDMFKMNKLLAKHIISLEPTKPSSSKKARVENEPAIAVKAAEPSV 257

Query: 130 CPSVIISEALANFFGVDGREMLQSEVLRRIWEYIKVNHLEDPLNPMAVLCDAKLRELFGC 189
           CPSVIISEALA+FFGVDGREMLQSEVLRRIWEYI+ NHLEDPLNPMAVLCDAKL+ELFGC
Sbjct: 258 CPSVIISEALASFFGVDGREMLQSEVLRRIWEYIRANHLEDPLNPMAVLCDAKLQELFGC 317

Query: 190 ESISALGIPEVLGRHHIFRRS 210
           ESISALGIPEVLGRHHIFRRS
Sbjct: 318 ESISALGIPEVLGRHHIFRRS 338

The following BLAST results are available for this feature:

BLAST of Cucsat.G19154.T9 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	1.6e-13	46.99	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	4.7e-13	39.58	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	4.7e-13	46.15	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q2TBN1	1.8e-04	27.68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]
Q96GM5	1.8e-04	27.68	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Cucsat.G19154.T9 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150254.1	8.93e-140	100.00	angiomotin isoform X2 [Cucumis sativus] >KGN44294.2 hypothetical protein Csa_015...	[more]
XP_031744592.1	9.24e-140	100.00	angiomotin isoform X1 [Cucumis sativus]	[more]
XP_008447697.1	9.24e-140	100.00	PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_038900174.1	4.53e-138	98.51	uncharacterized protein LOC120087296 isoform X2 [Benincasa hispida]	[more]
XP_038900172.1	4.69e-138	98.51	uncharacterized protein LOC120087296 isoform X1 [Benincasa hispida] >XP_03890017...	[more]

BLAST of Cucsat.G19154.T9 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEG4	4.32e-140	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G758990 PE=4 SV=1	[more]
A0A1S3BI07	4.48e-140	100.00	uncharacterized protein LOC103490111 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C9T5	4.48e-140	100.00	Box A-binding factor isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CGF4	3.95e-135	92.38	uncharacterized protein LOC111010586 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1J2D3	6.51e-134	94.53	uncharacterized protein LOC111480626 OS=Cucurbita maxima OX=3661 GN=LOC111480626...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 129..210 e-value: 1.6E-9 score: 47.6 coord: 24..103 e-value: 1.2E-44 score: 164.3
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 134..204 e-value: 8.3E-19 score: 67.2 coord: 28..98 e-value: 5.0E-28 score: 96.8
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 128..207 score: 19.366796
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 23..100 score: 22.405313
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 19..109 e-value: 5.2E-31 score: 108.4 coord: 126..209 e-value: 1.5E-20 score: 74.8
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 16..103
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 128..205
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 10..206
None	No IPR available	PANTHER	PTHR13844:SF62	SUBFAMILY NOT NAMED	coord: 10..206
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 133..204 e-value: 3.0672E-20 score: 78.7393
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 28..98 e-value: 6.76524E-41 score: 131.897

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G19154	Cucsat.G19154	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T9.E1	Cucsat.G19154.T9.E1	exon
Cucsat.G19154.T9.E2	Cucsat.G19154.T9.E2	exon
Cucsat.G19154.T9.E3	Cucsat.G19154.T9.E3	exon
Cucsat.G19154.T9.E4	Cucsat.G19154.T9.E4	exon
Cucsat.G19154.T9.E5	Cucsat.G19154.T9.E5	exon
Cucsat.G19154.T9.E6	Cucsat.G19154.T9.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T9.C1	Cucsat.G19154.T9.C1	CDS
Cucsat.G19154.T9.C2	Cucsat.G19154.T9.C2	CDS
Cucsat.G19154.T9.C3	Cucsat.G19154.T9.C3	CDS
Cucsat.G19154.T9.C4	Cucsat.G19154.T9.C4	CDS
Cucsat.G19154.T9.C5	Cucsat.G19154.T9.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T9	Cucsat.G19154.T9-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus