Cucsat.G19154.T10 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G19154.T10
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	upstream activation factor subunit spp27-like
Location	ctg3517: 34959 .. 39393 (+)
RNA-Seq Expression	Cucsat.G19154.T10
Synteny	Cucsat.G19154.T10

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGAAAGAGAAGACAGAGAGAGTTCTTGAGAGAGAGAGAGAGAGAGAAGGACCGTTAATTTCCGTTAATATATGAAGCAATTTTGAGAGCTACAAGAAGCTAAAATGGTTACAGACCAAGAGCTTTCTCAAGCTATACAATGTCTTCTTCGCGACTCTGCTTCTCCTACAAACCCTAACCCTTTTTCTTCTTTAAACGCTGTTGTTCAGGAGTTGCAGACCAAGCTTGGTCTTGACCTCTCTCATAAACTCGATTTCATCCATGCCCAGATCCAATTTATCCTTCGTTCTCATCCTCAACAACCCCATCATCACCAACATCACCACCACCACCACCATCAGCAGCAGCAGCAACAACAACTACCCTCTTCGCAGAAAGACCTCTTTGCCCTTCATCAAAGCCCTAATTTTCAATCTGCGCCTTCCCCCACTTCCTCTGCGTTTCACACTTTCTCTGCTCAGCCTCCGCCGGCTAAGCCGGATTCCGTCGTTGCTCCCACTGTTCCGGGCTCTGACCCGCCAAAGGAAAGGTGGGGTTCTTTTGGTTTTTTCAATTTTGGGGTTTTGGGTTTCTTTTATTTTTTTTAGTTGCCCTCTTTGATTTACTTATTGTTCGTCTTGGGTGTGTATGTTTGTGTAAATCTGTTTCAATTCTGGAGTGAAGTTGATTTCGTTCTGTTTTGATTGCAATTCTACAGAATTAGTGGAATGGCTTCTCGATTTCTTTGCTTATTCCTTTTCCTTTTTGCAACGGTTACTTCATTCGTTCAGAATTAGGTCGGAAAAGGCAGTGAAGTTGTTCGTTTACTTGCTGTGGACTTTGTTTGGAGGATTTTGGAGTGTAGAGTTCACTGATTAGTGGCATTTGGGTTGGTCTTAGTTTTACTCGAGGGTTTATTGTTAATTTTCCCTTGAGTGTTGACTAGGTTCTGCTTCGTTTTCCTCTGGGTTGAGAAGTTTATTCAGGATTTCTGGTCAGAAATGTGACTTTCTGCTTTTGTCGTGGCTGTTGGAAAAGTAAATTTTCTCTTAATGATGCCTTGTCAAATGTGTGTGCATAGGTATCTACTACGAGCATGCTGAGTTTTCATTTATTTTCTGGTTGTTTCCTTTAATTCGTATTATTTTTGCATTCTTGGTTCTAGTCTGGTCAGCACAGCCAGATACCATATGCGGAAAAAAAAATCTTGGGAATTTGTAACTTTGGATTTGTCCATCAGCATGGTAGTGGATTGGTAGGGAGTTAATAAAATGAGAGATGGAAGCTACCCTAGTTTACTGGAAATGGATATTAATGTATGGCATCTACATGTGAGGAGTCTTTATCGTATGCATACATTTTTCTATAAATATCACTGTAGCTTTGACCTCTCAGCACACTTTTGAAAGTGAACGGCTAGCTCCTTCCCAGTCTGGGCTTACTTTTATTTTGCAATCTAGTAATGTATGTAGCTTCGAGCTTGTAATCTCATGATTTCAATGGCCTTACTAGTGATACCTTTTTAAGTATCGATTACCAGCTGGTAGCCATAAGTATGGAACACTTTGTTGTGTACTATAGAGCTACGAAGTAGAATCTTTCAATTAGTTTTCATTCCATGGAAGGGTGAAATGTTTCATTTACTGTTTTATTCAAAGATTAAAATAATACACGTCTCTCTAGTTCTTAGATCCCAAAGATATATGTTTCGACTGATAAAAGCTCACCTTTAAAACTTGAAAGCAGTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCCGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAGCCAGAATTACCGCGAACTGAGGTTTCTATCTCTTTCTTATTTCGTAGTTGTTTGATTCTCAATTTTAGCACTTTATGAGGTTCATATGATGCATCTGTGTTTGTTTCAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGCTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTGGCCAAACACATCATTCCTCTTGAACCTACAAGTAAGTATTCAGTTTGATGCTTCCCTGTCCCCCTAGTTCTGGAAGAAACCAATAGTTTATTTTCTAATCCTGTCAGAACCATCAAGTTCTAAGAAGGCACGAGTGGAGAATGAATCCGCAGTTAGTGTTAAAAGTGCAGAACCCAGTATTTGTCCTTCTGTGATTATATCTGAAGCACTAGCAAATTTTTTTGGCGTTGATGGTAGGGAGATGCTCCAATCAGAAGTTCTGAGACGCATCTGGGAATACATAAAAGTGAATCATCTTGAGGTTGGCAAATAAACTCTGGAAACTTTCACTTTGTTGCATGCTAGCCATTCACTATTAATACCATCTTTTCAACTTGAGAGATCATTTCTTTGTAAAAATTATGCATACAGGACCCTCTGTAATGGATCTTAAAACATGGGGCATTGTTCTCATATGTCAGATTAACTGTTTTTTCTTCATTAAAATGATCTTGTACTCACATGTCTTGGATCTTAAAAACAGGACCCTCTGAACCCGATGGCGGTGTTGTGCGATGCAAAACTTCGAGAACTGTTTGGTTGTGAAAGCATTTCTGCACTGGGAATCCCAGAAGTTTTAGGCCGCCACCATATATTTAGGAGATCGTGATAGCTATTCTTCTAGGATGGTTAGTGCATTCTAACTTTCTTATATGTTAAAACTGATGTTAGAGTTGAAGGGTAATTTTGAGTTTCCCCATTGTTGCAATTTGACCTCCTTGCCGGCTTCATCATCATGCACGTTTTCCAAAAACATATTATTTGATTGATTGAAATTTCTTCTAGTGTTGGAGGCTGCTGATTGATAACCTGTTATCACTTGTCCTAGTTGGAAATTTATGATGCAGTATGCAGGATAGTTATAAGAAAATTATTGATATCTTCTTAGGATTAAATATATGAGAGTTTTGGGGATTTTGTCTTAGTTTTATGATGGGTCTGTGGGAACCTTCAATTGGATTCTGTTCTTGTACCATTTGCTGGGATTGATGGCAGGATAAAGAAAAAATGAAAGGAAAAACTGTCGAATTGATTATTACCTCATTTAAATTCACCCAGGACTCTGAAGTTGAAACAAACACAAGCCCTGAAATGGAAAATGTTTACTTGAAACTGATTATTTTGTTTTTGTGCCATATGGAAAGGATAAAAAACCTAAGGTAATAAACTAGGACTTGGAAATTCAGTTAGAAATAGAAAGTCAAGTCAAAGATTAGTGATTTGGAGGTCTCTTATTTATTTTGGTCTCCACAAATCAAATCTGAAAATTTAGTATATGGAATGTATTCTTGTACAAAGTTTTCTTTTTGAGTTCATAGATGCCTTATTTGATTATCTGTAAATGAAGACACAATGATTTGAAGCTTTATTTTGTGCAATCATAGCTTTTCACCCTTGAGGCCCCGTTTAATAATAATTTGGTCCTTCAAAATTAAGTTTATGAATTAAGCTTTTAAATGTTATTCCCACCAATGAGTTCCATTATTTTGTTATATACTTCTCCAAATATTTTCAAATCCAAGCCAAATTTTACAAAACTTGATTTTGTTTTTAGAATTTGATCTTTAGAATCTAATTATTTGTTTAAGAGAGATAAAGTCCAATTTTCAAAATCCAAAAACTAAAACTAAAATTATAATCAAATGGGCCCTTGGTTATTTGAATTTCAATTGACGGTTGTTTTCTTTTTTTCCTTTTCTTCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGAACCGAAGGGATTACCTTCTTTCTGACCGCTTTTTCCAGCAGTGCCAGCTGTGCTCCATACTTGCTTTACCTTTGGTTGAAGAATTTGTTTCATTTTCTTTTTCTTTTTCAAAAGCATCAAAGAATGGAATAGCCAGGACAAAACTAATGAGTGCTGATCCTTGATTGCAGTTGCAGATCGAATGGTGTTAGCGACTTACATATTGGGACAGTGTTTGGAAAAGTCTATATGGTTTTTTCTCCCCCTTCTCTTAATGTTGTAATCAGTGATGATAATATTTTACTTTTGGATCTTATGCTAAGGTAAGGTGTGAACTTGGGGATGTAAGAATGGGGGCTTATGGCAGAGTTTATTTTGTAATTGTCTGCCAAGTCCTTGGGTTTTCATTTGTCTGACTTGGTGTTTAGGTTTAGAGTAACCCCTGGGAGTTTCTAACATCCATCATACACTACAGATGATGATGGGTAAAGTAAAATTATGTTATCTACTCACTAGTTTGTTAAATATATCTATCTATATATATATATATATATATGTATGATGTTTTTATTTAGTAAAAAGTTTAGCCTTCTTTACTTCCATT

Coding sequence (CDS)

ATGGTTACAGACCAAGAGCTTTCTCAAGCTATACAATGTCTTCTTCGCGACTCTGCTTCTCCTACAAACCCTAACCCTTTTTCTTCTTTAAACGCTGTTGTTCAGGAGTTGCAGACCAAGCTTGGTCTTGACCTCTCTCATAAACTCGATTTCATCCATGCCCAGATCCAATTTATCCTTCGTTCTCATCCTCAACAACCCCATCATCACCAACATCACCACCACCACCACCATCAGCAGCAGCAGCAACAACAACTACCCTCTTCGCAGAAAGACCTCTTTGCCCTTCATCAAAGCCCTAATTTTCAATCTGCGCCTTCCCCCACTTCCTCTGCGTTTCACACTTTCTCTGCTCAGCCTCCGCCGGCTAAGCCGGATTCCGTCGTTGCTCCCACTGTTCCGGGCTCTGACCCGCCAAAGGAAAGCAGTACCCAAACCAAAACTAAGAGAAGAGGAGGCCCCGGGGGTCTAAACAAGCTTTGTGGTGTTTCTCCTGAACTTCAGGCTATTGTTGGCCAGCCAGAATTACCGCGAACTGAGATAGTGAAACAGCTATGGGCATACATCAGAAAAAACAACCTACAGGATCCAAGTAACAAGAGGAAAATAATATGCAATGATGAGCTGCGGTTGGTATTTGAAACAGACTGCACTGACATGTTCAAAATGAATAAGTTGCTGGCCAAACACATCATTCCTCTTGAACCTACAAGTAAGTATTCAGTTTGA

Protein sequence

MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFILRSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQPPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKYSV

Homology

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-13
Identity = 32/69 (46.38%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 163 VSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFK 222
           +S  L +++G+ EL RTE+V++LWAYI+ +NLQ+P+NK++I+C+++L L+     T+MF+
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILGKS-TNMFE 185

Query: 223 MNKLLAKHI 232
           M+K+LA H+
Sbjct: 186 MHKILASHM 193

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-12
Identity = 36/94 (38.30%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 141 ESSTQTKTKRRGGPGGLN---KLCGVSPELQAIVGQPELPRTEIVKQLWAYIRKNNLQDP 200
           ES ++ K K+   P   +   +   +S  LQ  +G  ELPRT++VK +W YI++++LQ+P
Sbjct: 101 ESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNP 160

Query: 201 SNKRKIICNDELRLVFETDCTDMFKMNKLLAKHI 232
            ++R+I+C++++  +F    T MF MNKLL KH+
Sbjct: 161 KDRREILCDEKMEPIFGKKMT-MFSMNKLLTKHL 193

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.3e-10
Identity = 53/163 (32.52%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 79  QQQQQQQLPSSQKDLFAL-HQSPNFQSAPSPTSSAFHTFSAQPPPAKPDSVVAPTVPGSD 138
           +++++  L + +KDL AL  +  +  +APS   S       +  PA+       T  G++
Sbjct: 30  EERRKVDLSAHKKDLNALILKCFDETAAPSEKESL-----EKQAPARKTKGKRATENGTE 89

Query: 139 PPKESSTQTKTKRRGGPGG-------------LNKLCGVSPELQAIVGQPELPRTEIVKQ 198
             K+ + +T+ ++  G  G             LNK   +SP+L   +G  +L R + VK+
Sbjct: 90  EGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKK 149

Query: 199 LWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLL 228
           LW YI+ ++LQDP++KR I+C+D+L+ VFE D   MF MNK L
Sbjct: 150 LWEYIKAHDLQDPNDKRTILCDDKLKSVFEVDTLHMFTMNKYL 187

[Close]

BLAST of Cucsat.G19154.T10 vs. NCBI nr
Match: XP_031744593.1 (angiomotin isoform X3 [Cucumis sativus])

HSP 1 Score: 464 bits (1194), Expect = 1.56e-163
Identity = 238/241 (98.76%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120
           RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120

Query: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180
           PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE
Sbjct: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180

Query: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKY 240
           IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT   
Sbjct: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPS 240

[Close]

BLAST of Cucsat.G19154.T10 vs. NCBI nr
Match: XP_031744592.1 (angiomotin isoform X1 [Cucumis sativus])

HSP 1 Score: 464 bits (1194), Expect = 6.09e-163
Identity = 238/241 (98.76%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120
           RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120

Query: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180
           PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE
Sbjct: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180

Query: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKY 240
           IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT   
Sbjct: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPS 240

[Close]

BLAST of Cucsat.G19154.T10 vs. NCBI nr
Match: XP_004150254.1 (angiomotin isoform X2 [Cucumis sativus] >KGN44294.2 hypothetical protein Csa_015454 [Cucumis sativus])

HSP 1 Score: 458 bits (1178), Expect = 1.60e-160
Identity = 237/241 (98.34%), Postives = 237/241 (98.34%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120
           RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120

Query: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180
           PPAKPDSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE
Sbjct: 121 PPAKPDSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180

Query: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKY 240
           IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT   
Sbjct: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPS 240

[Close]

BLAST of Cucsat.G19154.T10 vs. NCBI nr
Match: XP_016900508.1 (PREDICTED: box A-binding factor isoform X2 [Cucumis melo])

HSP 1 Score: 446 bits (1147), Expect = 3.34e-156
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQ-LPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQ 120
           RSHPQQPHHHQHHHHHHHQQQQQQQ LPSSQKDLFALHQSPNFQSAPSPTSSAFHTF+AQ
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQ 120

Query: 121 PPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180
           PP AK DSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT
Sbjct: 121 PPTAKADSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180

Query: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSK 240
           EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT  
Sbjct: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKP 240

[Close]

BLAST of Cucsat.G19154.T10 vs. NCBI nr
Match: XP_008447697.1 (PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >XP_008447700.1 PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >KAA0048155.1 box A-binding factor isoform X2 [Cucumis melo var. makuwa] >TYK08100.1 box A-binding factor isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 446 bits (1147), Expect = 8.70e-156
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQ-LPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQ 120
           RSHPQQPHHHQHHHHHHHQQQQQQQ LPSSQKDLFALHQSPNFQSAPSPTSSAFHTF+AQ
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQ 120

Query: 121 PPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180
           PP AK DSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT
Sbjct: 121 PPTAKADSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180

Query: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSK 240
           EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT  
Sbjct: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKP 240

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL
Match: A0A0A0LEG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G758990 PE=4 SV=1)

HSP 1 Score: 458 bits (1178), Expect = 7.76e-161
Identity = 237/241 (98.34%), Postives = 237/241 (98.34%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120
           RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120

Query: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180
           PPAKPDSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE
Sbjct: 121 PPAKPDSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180

Query: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKY 240
           IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT   
Sbjct: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPS 240

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL
Match: A0A1S4DX10 (box A-binding factor isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490111 PE=4 SV=1)

HSP 1 Score: 446 bits (1147), Expect = 1.62e-156
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQ-LPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQ 120
           RSHPQQPHHHQHHHHHHHQQQQQQQ LPSSQKDLFALHQSPNFQSAPSPTSSAFHTF+AQ
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQ 120

Query: 121 PPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180
           PP AK DSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT
Sbjct: 121 PPTAKADSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180

Query: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSK 240
           EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT  
Sbjct: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKP 240

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL
Match: A0A1S3BI07 (uncharacterized protein LOC103490111 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490111 PE=4 SV=1)

HSP 1 Score: 446 bits (1147), Expect = 4.21e-156
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQ-LPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQ 120
           RSHPQQPHHHQHHHHHHHQQQQQQQ LPSSQKDLFALHQSPNFQSAPSPTSSAFHTF+AQ
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQ 120

Query: 121 PPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180
           PP AK DSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT
Sbjct: 121 PPTAKADSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180

Query: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSK 240
           EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT  
Sbjct: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKP 240

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL
Match: A0A5D3C9T5 (Box A-binding factor isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002610 PE=4 SV=1)

HSP 1 Score: 446 bits (1147), Expect = 4.21e-156
Identity = 234/242 (96.69%), Postives = 235/242 (97.11%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL
Sbjct: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQ-LPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQ 120
           RSHPQQPHHHQHHHHHHHQQQQQQQ LPSSQKDLFALHQSPNFQSAPSPTSSAFHTF+AQ
Sbjct: 61  RSHPQQPHHHQHHHHHHHQQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFTAQ 120

Query: 121 PPPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180
           PP AK DSVVAPTVPGSDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT
Sbjct: 121 PPTAKADSVVAPTVPGSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRT 180

Query: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSK 240
           EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT  
Sbjct: 181 EIVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKP 240

[Close]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL
Match: A0A6J1CGF4 (uncharacterized protein LOC111010586 OS=Momordica charantia OX=3673 GN=LOC111010586 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 4.73e-133
Identity = 205/241 (85.06%), Postives = 213/241 (88.38%), Query Frame = 0


Query: 1   MVTDQELSQAIQCLLRDSASPTNPNPFSSLNAVVQELQTKLGLDLSHKLDFIHAQIQFIL 60
           MVTDQELSQAIQCLLRDSAS  NP+ FSSLNAVVQEL+TKLGLDLSHK+DFIHAQIQF+L
Sbjct: 1   MVTDQELSQAIQCLLRDSASAANPSAFSSLNAVVQELETKLGLDLSHKVDFIHAQIQFLL 60

Query: 61  RSHPQQPHHHQHHHHHHHQQQQQQQLPSSQKDLFALHQSPNFQSAPSPTSSAFHTFSAQP 120
           RSHP  P H    HH HHQ    Q  P  QKDLF LHQ+PNFQSAPSPTSSAFHTF+AQP
Sbjct: 61  RSHPLHPQH----HHRHHQPPPPQPPPPPQKDLFTLHQTPNFQSAPSPTSSAFHTFTAQP 120

Query: 121 PPAKPDSVVAPTVPGSDPPKESSTQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180
           PP KPD+ VAPT+  SDPPKES TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE
Sbjct: 121 PPPKPDTAVAPTLAPSDPPKES-TQTKTKRRGGPGGLNKLCGVSPELQAIVGQPELPRTE 180

Query: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTSKY 240
           IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPT   
Sbjct: 181 IVKQLWAYIRKNNLQDPSNKRKIICNDELRLVFETDCTDMFKMNKLLAKHIIPLEPTKPS 236

The following BLAST results are available for this feature:

BLAST of Cucsat.G19154.T10 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08747	7.1e-13	46.38	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	2.7e-12	38.30	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	3.3e-10	32.52	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Cucsat.G19154.T10 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744593.1	1.56e-163	98.76	angiomotin isoform X3 [Cucumis sativus]	[more]
XP_031744592.1	6.09e-163	98.76	angiomotin isoform X1 [Cucumis sativus]	[more]
XP_004150254.1	1.60e-160	98.34	angiomotin isoform X2 [Cucumis sativus] >KGN44294.2 hypothetical protein Csa_015...	[more]
XP_016900508.1	3.34e-156	96.69	PREDICTED: box A-binding factor isoform X2 [Cucumis melo]	[more]
XP_008447697.1	8.70e-156	96.69	PREDICTED: uncharacterized protein LOC103490111 isoform X1 [Cucumis melo] >XP_00...	[more]

BLAST of Cucsat.G19154.T10 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEG4	7.76e-161	98.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G758990 PE=4 SV=1	[more]
A0A1S4DX10	1.62e-156	96.69	box A-binding factor isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490111 PE=4 SV=...	[more]
A0A1S3BI07	4.21e-156	96.69	uncharacterized protein LOC103490111 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C9T5	4.21e-156	96.69	Box A-binding factor isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CGF4	4.73e-133	85.06	uncharacterized protein LOC111010586 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 157..236 e-value: 1.2E-44 score: 164.3
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 2..59 e-value: 3.1E-7 score: 30.2
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 161..231 e-value: 6.7E-28 score: 96.4
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 156..233 score: 22.405313
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 152..241 e-value: 1.6E-30 score: 106.8
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 149..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..159
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..237
None	No IPR available	PANTHER	PTHR13844:SF62	SUBFAMILY NOT NAMED	coord: 1..237
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 161..231 e-value: 1.86992E-41 score: 134.208

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G19154	Cucsat.G19154	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T10.E1	Cucsat.G19154.T10.E1	exon
Cucsat.G19154.T10.E2	Cucsat.G19154.T10.E2	exon
Cucsat.G19154.T10.E3	Cucsat.G19154.T10.E3	exon
Cucsat.G19154.T10.E4	Cucsat.G19154.T10.E4	exon
Cucsat.G19154.T10.E5	Cucsat.G19154.T10.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T10.C1	Cucsat.G19154.T10.C1	CDS
Cucsat.G19154.T10.C2	Cucsat.G19154.T10.C2	CDS
Cucsat.G19154.T10.C3	Cucsat.G19154.T10.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19154.T10	Cucsat.G19154.T10-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus