Cucsat.G1914.T8 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1914.T8
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	la-related protein 1C
Location	ctg1002: 4192420 .. 4197457 (-)
RNA-Seq Expression	Cucsat.G1914.T8
Synteny	Cucsat.G1914.T8

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCGCATCATCAAACAAAGAAGGTAATAATGATGTTAGTCCTAATCCTGATTCAACTCTTACTCATCCAATAACTTCGCGCCAGAAATCAATGAGGCGTAATGGTTCGAGTAATTCATATAATAGTAGCCTCCCTCAACAGTCTGCACCTTCAAGTCCTGTAATTGATACGGCTCCTAATAATTCTCCAAAGGATCAGACACAGAGGACCACATTTGTATCATCACAATCACATAGTGATCATGGTCATCAACAACCACGCAATTCATATCGGAGTCGTGGTGGTGGTTCACATCCACGGGGTGACAATTCCCATCATCATAACTATGGTTCTAGACGTGATCACGATCGTGGAAATCAAGATTGGAATTCAAACCGAAATTACAATGCACAACCTCATAGAGTGGTTCACAGGTTTATTAGACCTTCTCCACCTCCACCTCCTAATACTACTGGCTATATTTCTTCTCCAACAATGAGAGCTATTGGTGGTCCGCTACCCTTCCCTGGTAGGATCTACATTTTTTATGTGAGGTTCCACAGTTTTCCTCATTTGAACTTGCTTAATGCTTGAATCTGTATGTAGATTTTGCTCCTCCAGTGGTGTATATTGGTCCGCCTCCTCCAGAGGCTCTTAGAGGTGTACCTTTTGTGGCTCCAATATCACCAAATGCGATGTTTTTTCATGGCCCAGACCCTCAGTTGTATGCTATGATAGTGAGTCAGATAGAATACTATTTCAGGTATATTTAATGTGATTGCTTCTAACTTTTCCCAATCATCCTTGTTTAGTGTTAGAAATTTGAAAACATTCTAATGGTGATTGCACCTTGTATTTGCGAATTGCAGTGGTGAAAATTTAATAAAGGATACTTTCTTGAGGCAGAACATGAATGAAGAAGGATGGGTTCCAGTTAAATTAATTGCAAGCTTCAGCAAGGTGAATTTTTAGAGGATTTCATCAAGGACGTATAAGTAATTTTTTCTTGACGATGATGACAGGATGATCTTCATTTTACTGTTATTTTCTGCTTTGTGCCCTGCCTGTGCATGTTTTTCTCTGTTATTCTTTTTAGAAAAAAACTGTTTTTTTTTTTTAATGTTTTCCTTTACTTCCTACTCTGTGTTTGGAACTTTTGATTACCTTTTACTTTATTGTGTGGTTTCTGTGGCTTCCAAAAACATTTTAAGAAATTCTTGTCTAATAAAAAACCATTTTCAGAAATATATATAATGGGCACTATTTTTTATAAAAAAGAAAATAATTCTTTTGCGCATGTCTACCCATACATATTAGATTTGGTTTTCAAACAGTCTTTGCTTCTAGACTTATTTGATTTATTAACGGTCACAATAGTGTATCTCATGAAAAAAAGGAGTAATTACAGCAAACGATTGAAGAAAAGAGAGAGCATCAGTGGGGAACTGAAATAGCTCCCACAGTTAAATTATGGGTTCTTATTATGGAGATTCAAATTAATCCAAGAAAAGACGTCAATTTTTAGCAGCATAGAATAGATTTTTGTCTGATGCCACAGAGATGTTGAAGGTTTATATAGCTTTATCCTATGATTAATCAAGTATAGGTGTTAGTTTCTTGTTGCTTCCCTGTATGGTTGTTATGGTATTTTTCCTTCCTTTTAAAGACCATGTTTCATCATGCACGTTACCACACTTTTTGGGCTTTGTGGAATATAAGCTTTGCCAGACATCCTTAGTTAAATATGAGATGCATGTTTTAATTTTCAAGAATTTTATGTCAATGAAATGTTCGATGTAGGATACAGTTTCAAATGTTGACATAGGGATGTGATGAGTCTGTTAGGATCCCAATAACAAGAAACAGAATATATTACTGTTATTGCGATATCAAAAGATAAATTACAATGCCAAGTCCCACAGTACATAATCTCCAATCTGATCCTCTCTCCACAACGTCCCCAACTCCTACTTATAACCAGGTCTTTGTAACTAATTACCACTTTCTCAAACCCACTGTGGGCTCCATGTCTAAAACCCTACTCTTTTTCTCGAGATATCCACTGTCCCTTCACAGAATTCTAGATAGTTGATGGTAATGCATTTAAAAGTGGGCAGTGACATTTTTAAGAGTGATTTGCTCAAGGCGTTCAATGATTTTACAAGATATGGCCATATGTGTCAAGTTGTCTTGATCATGAGTGACATTAAGGGCATGTTTGGCCCAAGGATTTGGGGGAGTATAGTTGTAACCTACTCCTTGTTTGGCAGCACGAGGAGTTCTTCTTAAACCCACTGTGGGATTCATGTCTAAAAAACTTCTACTTTGACATATTAACTCCTTACAATGTGAGCCCCACAACTAAATAATTTCTCAGGCTTAACAACTCTCCGGATAAACAACTGCACTTCTTCCTCCAAATACCCCCAAGGGTTTTGGACCAGTTGGCTTGGTGACAAGTCTTGGAAAACCATTAGCAATTCTTTGATTAAGAGAATATGGAGGGTTTAGATGACCCATATGTTAGATAAACTAACCTTCTTTTAGTACAAGTGGGTATATGGATTTGAATCTCCAATCTCAGGGAAAGAGTACCTGTCAATTAGTGTTGAGCTATGCTCACTTTAGATCCATCTTAATAATTAGGAGACCAAAATTTTCCTCCATTGAAGTATTATGCAAGGTTCTGCCCATTCTGTTTTCACGGTAGTGGTGAACATCCTCAGTAGATTTATTGCTAGGGATATGAATCTGACTTCACTAACAATAATGTGGAGCATATTCTTTGGCGGTGTGAATTTTCTAGCTCTGTTTGGGTTGCTTTTTCTTTTTTCTTTTCCAAACATTTGGCATTACGGCTGCTTGACATAGAGATGGTGTGTTGATTGAGGAGTCCCTTCTTAACTCTTCCTGTGAAGAGAAGGGCCTTTCTTTGGTTTACCTGGGGGTGTGCTATTTAGTGAGTTTTGTTTGGTGAGCCAAATGGTAGGGCTATTAGAGTTGTGGAGAGGGTTTCTAGTGATATTTGGTCTCTCGTTCGTTATCATGTTTTGGTGTGGGTTTCGATTTCAAAGGCTTTTTGTAACTATGTTATAGGTGTTATTTTGCATAGTGAGAGTACCTTCTTTTAGAGGGCCATCATGCCTTTATGGGTTGATTTTATTGTATGCCCTTGTATTCCCTTTTTCTTTTTTCTTGGAATTGCGTTTTGAGTTTTTGTAGTTGCTTCCTTTTGCTGGGTTTTACTATTATTTCCTTTTTTCCCTCATGGCTTTCTTTCGCACTTCCATTCTCCTTGATGAAAGCAGTTCTTTTCCATAAAAAAGTACTTGCATGTGACTCGCAAGGTCAGTGGGTTCTATGCTTTCTGAGATAATTGTGAAGAACGACTTTTGTCATGTAGCTTCTATAATATATTCTGTCCGTAGATAGTTATCATTTTCTCCTTTTAGATTTCTAAATCACGTTTCTAATAATGGAAGTTAATATGGTTAATTCTGGGAACCAGAGTGCATATATTGGTCTTATTCTTCAAGAATATGTCATCCCGACACTCTTTTGTAGGTTCAACGCCTGACTGAAAATATTCAAACCATATTGGATGCATTGCAATCATCTACAGTAGTGGAAGTAAAGGTCAGTAAACATCAGCTCCTGGACCAAGCCTTTTCCTCTATTTGTAATTGAGATATTAAGGGGTTTTGGAGTATTTTATTTTCTTATCTAGGTTGGGAAAAGAACACTGAAAGTTAATTTTAAAATGCAATGGTAAAATTTAAAATCATGTTTCTCCAAGTCTTCTATATCTAATCTTCTATTTTTTCCATTCTCTTAGGGAGATACAGTAAGGAGGCGACATGATTACGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATATTTCCGGCCCACTAAGCCCATTAAGCCCCGGAAGTTCCAAGCAGGATATGCTGGCAGCTGGTGTTAAAGGTATTGCACTAGAGAATATTAATCATAGGGTCTCTGAAGGTGGACAGGGTGACGTTCATGTTGATGAGGCATCCCACGGTGACAATAATACCAAGGCGGGTTCAGAGCATTCATCTTCTGAGAGGATTTAGACCAAGTTTGTGCTCTGAACCCCCACGTCCTTCTGGATGAAATCTAGATGTGGGTTGTAGAGATTAAATGAGGAGATGGTAGTGACATGGTTTGCTCGACGAATATTCTCTTCTCTTGATGCCAAGTAAATTGGTAAGCTGAAGTTGAAGAGGAGGAGGAACAATTTTTCTAAACAAAAAAAGAAAAAAAAAAAAAGAAAAGAAAAAACAAAAAGTCTATAACTTAAACTTAAAAAATTATTAAGAAAAAGAAAAAAAAAAAGACTATAACAGAAGTTCCTTTTATGGTGGAGGGTAGCATTTTTGGTTTTGTGGGCTGCTGTTGGCTGGCTGGTATGCTTTGTTTCTTAAGTTTATATTCTTTTTTTGTTGTGATTTTGGTTTTTGGTGATGGTGGCATGTACTTAATGATGTGGGGGAATTTTGATTTGCTTCCCCATGGCTGCCCCTAAGCTGGTTTTTTGATATCTTTGGGGTCAGAGAACTTCGAGCTCTTCAATGAGAGAACAAACAAACAACACGGTGATTGGTAAAAGAAGTTGGGAAATGTTTTGAGTTTCGTTGTGCAAGGTGAGTATCTAGAGCTGCAATTGCTGTTCTAAATCTTGAAGGTTCTTTCCATCTTCTTTTATTATTATTGTTTTATCAGAGACTTTGCCATGGCGTTTTGCTCTATAAATATCTTTCAACTTTGAATGATGATGAGGCATTAGGAACTTCTGAAGATTGGACTCCCCACCTAATTATATGTTCTGAAGTTTTTTGTCCAATTGATATATTATTTTGCTTGACATATCTTCATTTTATTGATACGTTTTGTTTCGGAACAAACATTCTTGAGAATGGGAATTTGGAATACCAGTTAACATTATTTCTGCATTTCTCGCAACCCTTTTGTTCTTTATCCTGTTTCATATGCTGCTCTTTGTATGAATTTCGTTAAATGCATCTATAGG

Coding sequence (CDS)

CCGCATCATCAAACAAAGAAGTCTGCACCTTCAAGTCCTGTAATTGATACGGCTCCTAATAATTCTCCAAAGGATCAGACACAGAGGACCACATTTGTATCATCACAATCACATAGTGATCATGGTCATCAACAACCACGCAATTCATATCGGAGTCGTGGTGGTGGTTCACATCCACGGGGTGACAATTCCCATCATCATAACTATGGTTCTAGACGTGATCACGATCGTGGAAATCAAGATTGGAATTCAAACCGAAATTACAATGCACAACCTCATAGAGTGGTTCACAGGTTTATTAGACCTTCTCCACCTCCACCTCCTAATACTACTGGCTATATTTCTTCTCCAACAATGAGAGCTATTGGTGGTCCGCTACCCTTCCCTGATTTTGCTCCTCCAGTGGTGTATATTGGTCCGCCTCCTCCAGAGGCTCTTAGAGGTGTACCTTTTGTGGCTCCAATATCACCAAATGCGATGTTTTTTCATGGCCCAGACCCTCAGTTGTATGCTATGATAGTGAGTCAGATAGAATACTATTTCAGTGGTGAAAATTTAATAAAGGATACTTTCTTGAGGCAGAACATGAATGAAGAAGGATGGGTTCCAGTTAAATTAATTGCAAGCTTCAGCAAGGTTCAACGCCTGACTGAAAATATTCAAACCATATTGGATGCATTGCAATCATCTACAGTAGTGGAAGTAAAGGGAGATACAGTAAGGAGGCGACATGATTACGATAGATGGATTATTCGACCTGGTCAAGTTCCTAATATTTCCGGCCCACTAAGCCCATTAAGCCCCGGAAGTTCCAAGCAGGATATGCTGGCAGCTGGTGTTAAAGGTATTGCACTAGAGAATATTAATCATAGGGTCTCTGAAGGTGGACAGGGTGACGTTCATGTTGATGAGGCATCCCACGGTGACAATAATACCAAGGCGGGTTCAGAGCATTCATCTTCTGAGAGGATTTAG

Protein sequence

PHHQTKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSHHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGPLPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEASHGDNNTKAGSEHSSSERI

Homology

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot
Match: Q8RWR2 (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-38
Identity = 118/295 (40.00%), Postives = 176/295 (59.66%), Query Frame = 0


Query: 2   HHQTKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRG 61
           ++ T  S+ SS V + AP N+ +DQ       S +     G    RNS R+R   S+PRG
Sbjct: 171 NNNTSSSSTSSNVSNAAPLNT-RDQNH-----SQRGGGSFGSGNFRNSQRNRNSSSYPRG 230

Query: 62  DNSHHHNYGSRRDHDRGNQDWNSNRNYNA-----QPHRVVHRFIRPS-----PPPPPNTT 121
           +  HH   G+RR+++ GNQ   S+RNY+      QP R V   IRP      P  P ++ 
Sbjct: 231 EGLHH---GNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGV-GMIRPQMLMGPPSFPASSA 290

Query: 122 GYISSPTMRAIGGPLPFPDFAPPVVYIGP-PPPEALRGVPFVAPISPNAMFFHGPDPQLY 181
            Y+++P + + GGP+ +PD+A  V    P P P  L G PF  P+ P  M+F   D  LY
Sbjct: 291 QYMAAPQLGSYGGPIIYPDYAQHVFMPHPSPDPMGLVG-PF--PLQP--MYFRNFDAILY 350

Query: 182 AMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSS 241
             I++Q+EYYFS +NL +D  LR  MN+EGWVPV++IA+F ++  LT NIQTIL+AL+SS
Sbjct: 351 NKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 410

Query: 242 TVVEVKGDTVRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIAL 286
            VVE++G+T+RRR D+D++++   + P+ SGP    + G+S    L + ++ + L
Sbjct: 411 EVVEIQGETLRRRGDWDKYLL--PREPSRSGP----AAGASNNASLVSQIESMTL 444

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot
Match: Q94K80 (La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-28
Identity = 104/314 (33.12%), Postives = 161/314 (51.27%), Query Frame = 0


Query: 20  NNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSHHHNYGSRRDHDRGN 79
           N SP+ Q Q+  F +SQ+H    +   R+SYR++ G        +HH ++G RR+ + GN
Sbjct: 234 NPSPRGQNQKNGF-ASQNHGGTENPSQRDSYRNQNG--------NHHQSHGGRRNQEHGN 293

Query: 80  QDWNSNRNY-----NAQPHRVVHRFIR-PSPPPPPNTTGYISSPTMRAIGGPLPFPDFAP 139
           Q+W   R++     NAQ  R    F+R PSP   P      + P        +PFP    
Sbjct: 294 QNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMAAQP----FPSHIPFPTELA 353

Query: 140 PVVYIGPPPPEALRGVPFVAPISPNAMFF-HGPDPQLYAMIVSQIEYYFSGENLIKDTFL 199
              Y           +P++ PI     FF H  DP L+  +  QI+YYFS ENLI D +L
Sbjct: 354 QSSY--------YPRMPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYL 413

Query: 200 RQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHDYDRWIIR 259
           R  MN EG+VP++++A F KV  LT+NIQ I++ALQ+S  VEV+GD +R+R ++  W++R
Sbjct: 414 RGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVLR 473

Query: 260 PGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEASHGD--- 319
             + P  SGP S       + D +A  +  ++++  +     G    +   EA   D   
Sbjct: 474 --RNPTGSGPQS-----VDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTEALSDDQQQ 519

Query: 320 -NNTKAGSEHSSSE 323
            ++T   S H++ +
Sbjct: 534 SSSTAPVSNHNAPD 519

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot
Match: Q940X9 (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-17
Identity = 77/209 (36.84%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 127 PFPDFAPPVVYIGPPPPEALRG--VPFVAPISPNAMFFHGP---DPQ---LYAMIVSQIE 186
           P P F  PV Y+  PPP A+RG   P  AP   N     GP    P+   L   ++ Q+E
Sbjct: 232 PGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVN----QGPPILSPEKLDLRDRVLKQVE 291

Query: 187 YYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGD 246
           YYFS ENL  D +L   M+EEGWVP K+IA F +V+ +T ++  I+ AL  S  VEV+GD
Sbjct: 292 YYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGD 351

Query: 247 TVRRRHDYDRWIIRPGQVPNIS----GPLSPLSPGS-SKQDMLAAGVKGIALENINHRVS 306
            +R+R  +  WI  P    + S    G     SP S +  D      KG +   ++   S
Sbjct: 352 QIRKRDKWSDWI--PASKKSTSAETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSS 411

Query: 307 EGGQGDVHVDEASHGDNNTKAGSEHSSSE 323
           EG Q        S   NN K+G+  SS++
Sbjct: 412 EGAQ--------SSRTNNYKSGNLKSSAD 426

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot
Match: Q6PKG0 (La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-14
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 139 GPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNE 198
           GP  P+ +  + +      +   +      L   I  QIEYYFS +NL +D FLR+ M+ 
Sbjct: 373 GPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDA 432

Query: 199 EGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHDYDRWIIRP 254
           +G++P+ LIASF +VQ LT +I  I  AL+ S VVE+  + VRRR + ++W + P
Sbjct: 433 DGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPP 487

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot
Match: D5MCN2 (La-related protein 1 OS=Caenorhabditis elegans OX=6239 GN=larp-1 PE=4 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 4.3e-13
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 102 PSPPPPPNTTGYISSPTMRAIGGPLPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMF 161
           P  PP P  + ++ SP +   GG           V  G P   A   +PF    +P    
Sbjct: 522 PFRPPMPMLSPHLMSPPLDRDGG-------VTSPVSNGEPINTA---IPFAPIYNPPTAP 581

Query: 162 FHGPDPQLYAMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQ 221
               D  L   +  QIEYYFS ENL KD FLR+ M  EG++PV LIASF +V+ LTE+  
Sbjct: 582 RPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRSLTEDYS 641

Query: 222 TILDALQSSTVVEVKGDTVRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQ 274
            IL+AL+ ST V++  D ++ R   +  I     +P +SG  S   PG S Q
Sbjct: 642 LILEALKDSTKVDMSPDGLQIRAPVNPTIW--PLMPTVSGADS--LPGPSSQ 679

[Close]

BLAST of Cucsat.G1914.T8 vs. NCBI nr
Match: XP_004134846.1 (la-related protein 1C [Cucumis sativus] >KAE8647616.1 hypothetical protein Csa_003707 [Cucumis sativus])

HSP 1 Score: 627 bits (1617), Expect = 5.32e-223
Identity = 317/319 (99.37%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH
Sbjct: 211 QQSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 270

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP
Sbjct: 271 HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 330

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN
Sbjct: 331 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 390

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD
Sbjct: 391 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 450

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA
Sbjct: 451 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 510

Query: 306 SHGDNNTKAGSEHSSSERI 324
           SHGDNNTKAGSEHSSSERI
Sbjct: 511 SHGDNNTKAGSEHSSSERI 529

[Close]

BLAST of Cucsat.G1914.T8 vs. NCBI nr
Match: XP_008440860.1 (PREDICTED: la-related protein 1C [Cucumis melo] >KAA0025648.1 la-related protein 1C [Cucumis melo var. makuwa] >TYK12521.1 la-related protein 1C [Cucumis melo var. makuwa])

HSP 1 Score: 609 bits (1571), Expect = 4.91e-216
Identity = 306/318 (96.23%), Postives = 315/318 (99.06%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVIDTAPNNS KDQTQRTTFVSSQSH+DHGHQQPRNS+RSRGGGSHPRGDNSH
Sbjct: 209 QQSAPSSPVIDTAPNNSSKDQTQRTTFVSSQSHNDHGHQQPRNSFRSRGGGSHPRGDNSH 268

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP
Sbjct: 269 HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 328

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN
Sbjct: 329 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 388

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD
Sbjct: 389 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 448

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           YDRWIIRPGQVPNISGPLSPLSPGSS QDMLA GV+GIALEN+NH+VSEGGQG+VHVDEA
Sbjct: 449 YDRWIIRPGQVPNISGPLSPLSPGSSNQDMLAGGVQGIALENVNHKVSEGGQGEVHVDEA 508

Query: 306 SHGDNNTKAGSEHSSSER 323
           SHGD+NTKAGSEHSSSER
Sbjct: 509 SHGDSNTKAGSEHSSSER 526

[Close]

BLAST of Cucsat.G1914.T8 vs. NCBI nr
Match: XP_038881160.1 (la-related protein 1C-like [Benincasa hispida])

HSP 1 Score: 536 bits (1380), Expect = 3.86e-187
Identity = 279/318 (87.74%), Postives = 292/318 (91.82%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVID+APNNSPKDQTQRTT VSSQSH+DHGHQQPRNS+RSRGGGSHPRGDNSH
Sbjct: 208 QQSAPSSPVIDSAPNNSPKDQTQRTTLVSSQSHNDHGHQQPRNSFRSRGGGSHPRGDNSH 267

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRD+DRGNQDWNSNRNYNAQPHRVVHRFIRP PPPPPNTT +ISSPTMR IGGP
Sbjct: 268 HHNYGSRRDYDRGNQDWNSNRNYNAQPHRVVHRFIRPPPPPPPNTTAFISSPTMRPIGGP 327

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDF PPVVYIGPPP EALRGVPFVAPISPNAMFFH PDPQLY MIVSQIEYYFS EN
Sbjct: 328 LPFPDFVPPVVYIGPPP-EALRGVPFVAPISPNAMFFHSPDPQLYTMIVSQIEYYFSSEN 387

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRR+D
Sbjct: 388 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRND 447

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           Y+RWIIRPGQVP++SG   PLSPGSS QDMLAAGV+GIALENINHR  EGGQGD      
Sbjct: 448 YERWIIRPGQVPDLSG--LPLSPGSSNQDMLAAGVQGIALENINHRGFEGGQGDDRT--- 507

Query: 306 SHGDNNTKAGSEHSSSER 323
             G  NT AGS+HSSSER
Sbjct: 508 --GQVNTMAGSDHSSSER 517

[Close]

BLAST of Cucsat.G1914.T8 vs. NCBI nr
Match: XP_022949956.1 (la-related protein 1C-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 525 bits (1353), Expect = 7.86e-183
Identity = 272/329 (82.67%), Postives = 297/329 (90.27%), Query Frame = 0


Query: 5   TKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNS 64
           +++SAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+RSRGGGSHPRGDNS
Sbjct: 206 SQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNS 265

Query: 65  HHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGG 124
           HHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNTTG+ISSPTMR IGG
Sbjct: 266 HHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGG 325

Query: 125 PLPFPDFAPPVVYIGPPPP-----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEY 184
           PLPFPDF PPVVYIGPPPP     EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEY
Sbjct: 326 PLPFPDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 385

Query: 185 YFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDT 244
           YFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVKGD 
Sbjct: 386 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKGDK 445

Query: 245 VRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGD 304
           VRRR+DYDRWIIRPGQVPNI+ PLSP+S   S QDMLAAGV+GIALENINHR SEGGQGD
Sbjct: 446 VRRRNDYDRWIIRPGQVPNIAAPLSPVS---SNQDMLAAGVQGIALENINHRDSEGGQGD 505

Query: 305 VHVDEASHGDN-----NTKAGSEHSSSER 323
           VHV+    GD+     NTKAG + SSSER
Sbjct: 506 VHVEAQPCGDDRPGQVNTKAGPDCSSSER 531

[Close]

BLAST of Cucsat.G1914.T8 vs. NCBI nr
Match: XP_022949955.1 (la-related protein 1C-like isoform X1 [Cucurbita moschata] >KAG7034073.1 La-related protein 1C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519 bits (1336), Expect = 4.81e-180
Identity = 274/344 (79.65%), Postives = 297/344 (86.34%), Query Frame = 0


Query: 5   TKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNS 64
           +++SAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+RSRGGGSHPRGDNS
Sbjct: 206 SQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNS 265

Query: 65  HHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGG 124
           HHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNTTG+ISSPTMR IGG
Sbjct: 266 HHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGG 325

Query: 125 PLPFPDFAPPVVYIGPPPP-----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEY 184
           PLPFPDF PPVVYIGPPPP     EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEY
Sbjct: 326 PLPFPDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 385

Query: 185 YFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDT 244
           YFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVKGD 
Sbjct: 386 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKGDK 445

Query: 245 VRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGD 304
           VRRR+DYDRWIIRPGQVPNI+ PLSP+S   S QDMLAAGV+GIALENINHR SEGGQGD
Sbjct: 446 VRRRNDYDRWIIRPGQVPNIAAPLSPVS---SNQDMLAAGVQGIALENINHRDSEGGQGD 505

Query: 305 VHVDEASH--------------------GDNNTKAGSEHSSSER 323
           VHV EA H                    G  NTKAG + SSSER
Sbjct: 506 VHV-EALHSRRPSGNLSMQAQPCGDDRPGQVNTKAGPDCSSSER 545

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL
Match: A0A0A0KJG2 (HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G507180 PE=4 SV=1)

HSP 1 Score: 627 bits (1617), Expect = 2.10e-226
Identity = 317/319 (99.37%), Postives = 319/319 (100.00%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH
Sbjct: 16  QQSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 75

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP
Sbjct: 76  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 135

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN
Sbjct: 136 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 195

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD
Sbjct: 196 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 255

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA
Sbjct: 256 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 315

Query: 306 SHGDNNTKAGSEHSSSERI 324
           SHGDNNTKAGSEHSSSERI
Sbjct: 316 SHGDNNTKAGSEHSSSERI 334

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL
Match: A0A5A7SHL1 (La-related protein 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001020 PE=4 SV=1)

HSP 1 Score: 609 bits (1571), Expect = 2.38e-216
Identity = 306/318 (96.23%), Postives = 315/318 (99.06%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVIDTAPNNS KDQTQRTTFVSSQSH+DHGHQQPRNS+RSRGGGSHPRGDNSH
Sbjct: 209 QQSAPSSPVIDTAPNNSSKDQTQRTTFVSSQSHNDHGHQQPRNSFRSRGGGSHPRGDNSH 268

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP
Sbjct: 269 HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 328

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN
Sbjct: 329 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 388

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD
Sbjct: 389 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 448

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           YDRWIIRPGQVPNISGPLSPLSPGSS QDMLA GV+GIALEN+NH+VSEGGQG+VHVDEA
Sbjct: 449 YDRWIIRPGQVPNISGPLSPLSPGSSNQDMLAGGVQGIALENVNHKVSEGGQGEVHVDEA 508

Query: 306 SHGDNNTKAGSEHSSSER 323
           SHGD+NTKAGSEHSSSER
Sbjct: 509 SHGDSNTKAGSEHSSSER 526

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL
Match: A0A1S3B2V3 (la-related protein 1C OS=Cucumis melo OX=3656 GN=LOC103485155 PE=4 SV=1)

HSP 1 Score: 609 bits (1571), Expect = 2.38e-216
Identity = 306/318 (96.23%), Postives = 315/318 (99.06%), Query Frame = 0


Query: 6   KKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSH 65
           ++SAPSSPVIDTAPNNS KDQTQRTTFVSSQSH+DHGHQQPRNS+RSRGGGSHPRGDNSH
Sbjct: 209 QQSAPSSPVIDTAPNNSSKDQTQRTTFVSSQSHNDHGHQQPRNSFRSRGGGSHPRGDNSH 268

Query: 66  HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 125
           HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP
Sbjct: 269 HHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGGP 328

Query: 126 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 185
           LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN
Sbjct: 329 LPFPDFAPPVVYIGPPPPEALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEYYFSGEN 388

Query: 186 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 245
           LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD
Sbjct: 389 LIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHD 448

Query: 246 YDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEA 305
           YDRWIIRPGQVPNISGPLSPLSPGSS QDMLA GV+GIALEN+NH+VSEGGQG+VHVDEA
Sbjct: 449 YDRWIIRPGQVPNISGPLSPLSPGSSNQDMLAGGVQGIALENVNHKVSEGGQGEVHVDEA 508

Query: 306 SHGDNNTKAGSEHSSSER 323
           SHGD+NTKAGSEHSSSER
Sbjct: 509 SHGDSNTKAGSEHSSSER 526

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL
Match: A0A6J1GDH3 (la-related protein 1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453192 PE=4 SV=1)

HSP 1 Score: 525 bits (1353), Expect = 3.81e-183
Identity = 272/329 (82.67%), Postives = 297/329 (90.27%), Query Frame = 0


Query: 5   TKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNS 64
           +++SAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+RSRGGGSHPRGDNS
Sbjct: 206 SQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNS 265

Query: 65  HHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGG 124
           HHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNTTG+ISSPTMR IGG
Sbjct: 266 HHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGG 325

Query: 125 PLPFPDFAPPVVYIGPPPP-----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEY 184
           PLPFPDF PPVVYIGPPPP     EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEY
Sbjct: 326 PLPFPDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 385

Query: 185 YFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDT 244
           YFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVKGD 
Sbjct: 386 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKGDK 445

Query: 245 VRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGD 304
           VRRR+DYDRWIIRPGQVPNI+ PLSP+S   S QDMLAAGV+GIALENINHR SEGGQGD
Sbjct: 446 VRRRNDYDRWIIRPGQVPNIAAPLSPVS---SNQDMLAAGVQGIALENINHRDSEGGQGD 505

Query: 305 VHVDEASHGDN-----NTKAGSEHSSSER 323
           VHV+    GD+     NTKAG + SSSER
Sbjct: 506 VHVEAQPCGDDRPGQVNTKAGPDCSSSER 531

[Close]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL
Match: A0A6J1GE82 (la-related protein 1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453192 PE=4 SV=1)

HSP 1 Score: 519 bits (1336), Expect = 2.33e-180
Identity = 274/344 (79.65%), Postives = 297/344 (86.34%), Query Frame = 0


Query: 5   TKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNS 64
           +++SAPSSPVID APN+S +DQTQRT F+SSQSH+DHGHQQPR+S+RSRGGGSHPRGDNS
Sbjct: 206 SQQSAPSSPVIDPAPNSSSRDQTQRTAFISSQSHNDHGHQQPRSSFRSRGGGSHPRGDNS 265

Query: 65  HHHNYGSRRDHDRGNQDWNSNRNYNAQPHRVVHRFIRPSPPPPPNTTGYISSPTMRAIGG 124
           HHHNY SRRDHDRGNQDWNSNRN+NAQPHRVVHRFIRP PPPPPNTTG+ISSPTMR IGG
Sbjct: 266 HHHNYSSRRDHDRGNQDWNSNRNFNAQPHRVVHRFIRPPPPPPPNTTGFISSPTMRPIGG 325

Query: 125 PLPFPDFAPPVVYIGPPPP-----EALRGVPFVAPISPNAMFFHGPDPQLYAMIVSQIEY 184
           PLPFPDF PPVVYIGPPPP     EALRGVPFVAPI PNAMFFHGPDPQLYAMIVSQIEY
Sbjct: 326 PLPFPDFVPPVVYIGPPPPPPPPPEALRGVPFVAPIPPNAMFFHGPDPQLYAMIVSQIEY 385

Query: 185 YFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDT 244
           YFSGENL+KDTFLRQ M+E+GWVPV+LIA+FSKV+RLTENIQTILDALQSST+VEVKGD 
Sbjct: 386 YFSGENLVKDTFLRQKMDEDGWVPVRLIATFSKVKRLTENIQTILDALQSSTLVEVKGDK 445

Query: 245 VRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGD 304
           VRRR+DYDRWIIRPGQVPNI+ PLSP+S   S QDMLAAGV+GIALENINHR SEGGQGD
Sbjct: 446 VRRRNDYDRWIIRPGQVPNIAAPLSPVS---SNQDMLAAGVQGIALENINHRDSEGGQGD 505

Query: 305 VHVDEASH--------------------GDNNTKAGSEHSSSER 323
           VHV EA H                    G  NTKAG + SSSER
Sbjct: 506 VHV-EALHSRRPSGNLSMQAQPCGDDRPGQVNTKAGPDCSSSER 545

[Close]

BLAST of Cucsat.G1914.T8 vs. TAIR 10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-39
Identity = 118/295 (40.00%), Postives = 176/295 (59.66%), Query Frame = 0


Query: 2   HHQTKKSAPSSPVIDTAPNNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRG 61
           ++ T  S+ SS V + AP N+ +DQ       S +     G    RNS R+R   S+PRG
Sbjct: 172 NNNTSSSSTSSNVSNAAPLNT-RDQNH-----SQRGGGSFGSGNFRNSQRNRNSSSYPRG 231

Query: 62  DNSHHHNYGSRRDHDRGNQDWNSNRNYNA-----QPHRVVHRFIRPS-----PPPPPNTT 121
           +  HH   G+RR+++ GNQ   S+RNY+      QP R V   IRP      P  P ++ 
Sbjct: 232 EGLHH---GNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGV-GMIRPQMLMGPPSFPASSA 291

Query: 122 GYISSPTMRAIGGPLPFPDFAPPVVYIGP-PPPEALRGVPFVAPISPNAMFFHGPDPQLY 181
            Y+++P + + GGP+ +PD+A  V    P P P  L G PF  P+ P  M+F   D  LY
Sbjct: 292 QYMAAPQLGSYGGPIIYPDYAQHVFMPHPSPDPMGLVG-PF--PLQP--MYFRNFDAILY 351

Query: 182 AMIVSQIEYYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSS 241
             I++Q+EYYFS +NL +D  LR  MN+EGWVPV++IA+F ++  LT NIQTIL+AL+SS
Sbjct: 352 NKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEALRSS 411

Query: 242 TVVEVKGDTVRRRHDYDRWIIRPGQVPNISGPLSPLSPGSSKQDMLAAGVKGIAL 286
            VVE++G+T+RRR D+D++++   + P+ SGP    + G+S    L + ++ + L
Sbjct: 412 EVVEIQGETLRRRGDWDKYLL--PREPSRSGP----AAGASNNASLVSQIESMTL 445

[Close]

BLAST of Cucsat.G1914.T8 vs. TAIR 10
Match: AT4G35890.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-29
Identity = 104/314 (33.12%), Postives = 161/314 (51.27%), Query Frame = 0


Query: 20  NNSPKDQTQRTTFVSSQSHSDHGHQQPRNSYRSRGGGSHPRGDNSHHHNYGSRRDHDRGN 79
           N SP+ Q Q+  F +SQ+H    +   R+SYR++ G        +HH ++G RR+ + GN
Sbjct: 234 NPSPRGQNQKNGF-ASQNHGGTENPSQRDSYRNQNG--------NHHQSHGGRRNQEHGN 293

Query: 80  QDWNSNRNY-----NAQPHRVVHRFIR-PSPPPPPNTTGYISSPTMRAIGGPLPFPDFAP 139
           Q+W   R++     NAQ  R    F+R PSP   P      + P        +PFP    
Sbjct: 294 QNWTFQRSFNGREGNAQSQRGTPAFVRHPSPTVQPIPQFMAAQP----FPSHIPFPTELA 353

Query: 140 PVVYIGPPPPEALRGVPFVAPISPNAMFF-HGPDPQLYAMIVSQIEYYFSGENLIKDTFL 199
              Y           +P++ PI     FF H  DP L+  +  QI+YYFS ENLI D +L
Sbjct: 354 QSSY--------YPRMPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYL 413

Query: 200 RQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGDTVRRRHDYDRWIIR 259
           R  MN EG+VP++++A F KV  LT+NIQ I++ALQ+S  VEV+GD +R+R ++  W++R
Sbjct: 414 RGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVLR 473

Query: 260 PGQVPNISGPLSPLSPGSSKQDMLAAGVKGIALENINHRVSEGGQGDVHVDEASHGD--- 319
             + P  SGP S       + D +A  +  ++++  +     G    +   EA   D   
Sbjct: 474 --RNPTGSGPQS-----VDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTEALSDDQQQ 519

Query: 320 -NNTKAGSEHSSSE 323
            ++T   S H++ +
Sbjct: 534 SSSTAPVSNHNAPD 519

[Close]

BLAST of Cucsat.G1914.T8 vs. TAIR 10
Match: AT5G21160.1 (LA RNA-binding protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-18
Identity = 77/209 (36.84%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 127 PFPDFAPPVVYIGPPPPEALRG--VPFVAPISPNAMFFHGP---DPQ---LYAMIVSQIE 186
           P P F  PV Y+  PPP A+RG   P  AP   N     GP    P+   L   ++ Q+E
Sbjct: 232 PGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVN----QGPPILSPEKLDLRDRVLKQVE 291

Query: 187 YYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGD 246
           YYFS ENL  D +L   M+EEGWVP K+IA F +V+ +T ++  I+ AL  S  VEV+GD
Sbjct: 292 YYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGD 351

Query: 247 TVRRRHDYDRWIIRPGQVPNIS----GPLSPLSPGS-SKQDMLAAGVKGIALENINHRVS 306
            +R+R  +  WI  P    + S    G     SP S +  D      KG +   ++   S
Sbjct: 352 QIRKRDKWSDWI--PASKKSTSAETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSS 411

Query: 307 EGGQGDVHVDEASHGDNNTKAGSEHSSSE 323
           EG Q        S   NN K+G+  SS++
Sbjct: 412 EGAQ--------SSRTNNYKSGNLKSSAD 426

[Close]

BLAST of Cucsat.G1914.T8 vs. TAIR 10
Match: AT5G21160.3 (LA RNA-binding protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-18
Identity = 77/209 (36.84%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 127 PFPDFAPPVVYIGPPPPEALRG--VPFVAPISPNAMFFHGP---DPQ---LYAMIVSQIE 186
           P P F  PV Y+  PPP A+RG   P  AP   N     GP    P+   L   ++ Q+E
Sbjct: 232 PGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVN----QGPPILSPEKLDLRDRVLKQVE 291

Query: 187 YYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGD 246
           YYFS ENL  D +L   M+EEGWVP K+IA F +V+ +T ++  I+ AL  S  VEV+GD
Sbjct: 292 YYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGD 351

Query: 247 TVRRRHDYDRWIIRPGQVPNIS----GPLSPLSPGS-SKQDMLAAGVKGIALENINHRVS 306
            +R+R  +  WI  P    + S    G     SP S +  D      KG +   ++   S
Sbjct: 352 QIRKRDKWSDWI--PASKKSTSAETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSS 411

Query: 307 EGGQGDVHVDEASHGDNNTKAGSEHSSSE 323
           EG Q        S   NN K+G+  SS++
Sbjct: 412 EGAQ--------SSRTNNYKSGNLKSSAD 426

[Close]

BLAST of Cucsat.G1914.T8 vs. TAIR 10
Match: AT5G21160.2 (LA RNA-binding protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-18
Identity = 77/209 (36.84%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 127 PFPDFAPPVVYIGPPPPEALRG--VPFVAPISPNAMFFHGP---DPQ---LYAMIVSQIE 186
           P P F  PV Y+  PPP A+RG   P  AP   N     GP    P+   L   ++ Q+E
Sbjct: 232 PGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVN----QGPPILSPEKLDLRDRVLKQVE 291

Query: 187 YYFSGENLIKDTFLRQNMNEEGWVPVKLIASFSKVQRLTENIQTILDALQSSTVVEVKGD 246
           YYFS ENL  D +L   M+EEGWVP K+IA F +V+ +T ++  I+ AL  S  VEV+GD
Sbjct: 292 YYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGD 351

Query: 247 TVRRRHDYDRWIIRPGQVPNIS----GPLSPLSPGS-SKQDMLAAGVKGIALENINHRVS 306
            +R+R  +  WI  P    + S    G     SP S +  D      KG +   ++   S
Sbjct: 352 QIRKRDKWSDWI--PASKKSTSAETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSS 411

Query: 307 EGGQGDVHVDEASHGDNNTKAGSEHSSSE 323
           EG Q        S   NN K+G+  SS++
Sbjct: 412 EGAQ--------SSRTNNYKSGNLKSSAD 426

The following BLAST results are available for this feature:

BLAST of Cucsat.G1914.T8 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWR2	6.6e-38	40.00	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]
Q94K80	1.6e-28	33.12	La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1	[more]
Q940X9	1.7e-17	36.84	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]
Q6PKG0	1.7e-14	38.26	La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2	[more]
D5MCN2	4.3e-13	37.21	La-related protein 1 OS=Caenorhabditis elegans OX=6239 GN=larp-1 PE=4 SV=2	[more]

BLAST of Cucsat.G1914.T8 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134846.1	5.32e-223	99.37	la-related protein 1C [Cucumis sativus] >KAE8647616.1 hypothetical protein Csa_0...	[more]
XP_008440860.1	4.91e-216	96.23	PREDICTED: la-related protein 1C [Cucumis melo] >KAA0025648.1 la-related protein...	[more]
XP_038881160.1	3.86e-187	87.74	la-related protein 1C-like [Benincasa hispida]	[more]
XP_022949956.1	7.86e-183	82.67	la-related protein 1C-like isoform X2 [Cucurbita moschata]	[more]
XP_022949955.1	4.81e-180	79.65	la-related protein 1C-like isoform X1 [Cucurbita moschata] >KAG7034073.1 La-rela...	[more]

BLAST of Cucsat.G1914.T8 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJG2	2.10e-226	99.37	HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5A7SHL1	2.38e-216	96.23	La-related protein 1C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25...	[more]
A0A1S3B2V3	2.38e-216	96.23	la-related protein 1C OS=Cucumis melo OX=3656 GN=LOC103485155 PE=4 SV=1	[more]
A0A6J1GDH3	3.81e-183	82.67	la-related protein 1C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453...	[more]
A0A6J1GE82	2.33e-180	79.65	la-related protein 1C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453...	[more]

BLAST of Cucsat.G1914.T8 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66100.1	4.7e-39	40.00	winged-helix DNA-binding transcription factor family protein	[more]
AT4G35890.1	1.2e-29	33.12	winged-helix DNA-binding transcription factor family protein	[more]
AT5G21160.1	1.2e-18	36.84	LA RNA-binding protein	[more]
AT5G21160.3	1.2e-18	36.84	LA RNA-binding protein	[more]
AT5G21160.2	1.2e-18	36.84	LA RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 167..243 e-value: 1.4E-27 score: 107.6
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 173..228 e-value: 6.7E-23 score: 80.5
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 163..252 score: 25.883427
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 163..250 e-value: 5.1E-31 score: 108.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..324
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 9..303
None	No IPR available	PANTHER	PTHR22792:SF132	LA-RELATED PROTEIN 1B	coord: 9..303
None	No IPR available	CDD	cd07323	LAM	coord: 170..242 e-value: 4.43163E-33 score: 115.322
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 161..251

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1914	Cucsat.G1914	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1914.T8.E1	Cucsat.G1914.T8.E1	exon
Cucsat.G1914.T8.E2	Cucsat.G1914.T8.E2	exon
Cucsat.G1914.T8.E3	Cucsat.G1914.T8.E3	exon
Cucsat.G1914.T8.E4	Cucsat.G1914.T8.E4	exon
Cucsat.G1914.T8.E5	Cucsat.G1914.T8.E5	exon
Cucsat.G1914.T8.E6	Cucsat.G1914.T8.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1914.T8.C6	Cucsat.G1914.T8.C6	CDS
Cucsat.G1914.T8.C5	Cucsat.G1914.T8.C5	CDS
Cucsat.G1914.T8.C4	Cucsat.G1914.T8.C4	CDS
Cucsat.G1914.T8.C3	Cucsat.G1914.T8.C3	CDS
Cucsat.G1914.T8.C2	Cucsat.G1914.T8.C2	CDS
Cucsat.G1914.T8.C1	Cucsat.G1914.T8.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1914.T8	Cucsat.G1914.T8-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding