Cucsat.G18070.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G18070.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg3345: 4939477 .. 4941123 (+)
RNA-Seq Expression	Cucsat.G18070.T2
Synteny	Cucsat.G18070.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTGCTAGAATCTGGTTACACTTCTCTAACCTTCTCTATCGAACGCTTCCGTTACAATTACGCCCAATTCAAATTCGAAGGACCGAACGGTAAGTCTTCTTCTACTTCTTCTTTAATTCTTTCTTTTTTTTTCAAGATTTTTATTTATTTGATTTCTTGAATGTAATTCTGTTTTCTAGGGCTTCTCCGCGATGTTAATTTCCTATTGACTCCGGTCGTCCGTCCCTTGAGGATTGGCCAAATCGATCTATCTGCTTTTGTTTCCATGGATTCTGAAGAATTCTCCAACATCATTTCTGAATATCATATGTTTGATTACGGTAAATTACTACATTTTTTGTCAATTTCAATGTTAGTCAATAGGGAAACCCTAAACCCTTATTATTATTTACAGTTGAAGTTATTATAACGAGCAGACGGGTGTCATTCTCTTATGCAATTATACAAGAGACAATTATTACTCCAGAGGTATATGATTTTAATTTAGAAGTTTGAGGATGTTAATTAATGAATTGATATAAAAGTATGGCTTAATTGTTGGTAATAATTAATGTAGGATGGGCAATGCCTAATTGGGGGTGTTAGAGCACCAAATCAAGTTCAGTTCATAATTACTATGAGTCAACCAGATGCTTTCTATCATTTTGCAAGTCAATCGAAGAGAATATGGCTCTTTAAGGAAGTTAATTCTACCAAAGGAATAATTACTGCCCCTCTTGGATTGTATGGTCGACTTGTCTCTTTCTTTTGTGATGTCACTGCATTCCCTATGTAACTGAATTACATATAATTCAATATTATATGTCTCTCTGTCTTCTTTTTTCGTATAAAAATAATCACATTTGTTCAAGAGGTTCTGCATAATCTTGATGATTGAATCACGTATAATTCAATACTATATGTTTCTTTGTTTTCCTTGTTGTATAAAAATAATGAAGTATGTTCAAGAAGTTTAGTTGGAATTTGTTAGGCATGAAATAAACATACATATGATCGAATAAGACTTGAACCTAGGCTTGGAGAGAGTTGGGAGACTGTTTTAATATGAGCTAACTTTTAAAATTGATATGATTTCAGTTTATATATATATATAATACAAATAGCATAAATGTTGAACACTCTCAATATCGGTCGTGCAAATACATATGATTTTTCAATTCAATTAATGAGAATACGAAATTGTCCTTTGAATTTCTTTTTCAACTTCCTAGTAAAAAGTAATTTGAAAGCGAATATTTATTAAAGGATAGATAAGCCGTGCTTATATTGATTAACATAATAAGTTTAGGCATTTGATGAATATTAATATTAAATATTATACGTGTCATTGTATCAATTTTTTACTAACCAATTTTTTATTCATCTTTATCAAAATGAATAAAATTCAAGTGATATAGTATTTCTCAAAGTCAAATATTTAATTTGTCATCTCATCCATAATAAAGAATAAAAGAGTTTACTATTAGATGGATATAAAAATGAGATTCACTACAACATCCATTGTTCCATCCATTTGAAATAAACAACACAAGTTACCAGAATAGTGTTGAGAATGGGGAAATGAAGTTCAGATTTTTTCATCAATCAAGCTGTAAATGGTTAACAGTTTCTACTTTTCAGATTACTTATGGATCTCTGTTTTAT

Coding sequence (CDS)

GAATTGCTAGAATCTGGTTACACTTCTCTAACCTTCTCTATCGAACGCTTCCGTTACAATTACGCCCAATTCAAATTCGAAGGACCGAACGGGCTTCTCCGCGATGTTAATTTCCTATTGACTCCGGTCGTCCGTCCCTTGAGGATTGGCCAAATCGATCTATCTGCTTTTGTTTCCATGGATTCTGAAGAATTCTCCAACATCATTTCTGAATATCATATGTTTGATTACGTTGAAGTTATTATAACGAGCAGACGGGTGTCATTCTCTTATGCAATTATACAAGAGACAATTATTACTCCAGAGATTACTTATGGATCTCTGTTTTAT

Protein sequence

ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPEITYGSLFY

Homology

[Close]

BLAST of Cucsat.G18070.T2 vs. NCBI nr
Match: XP_031743834.1 (uncharacterized protein LOC105435987 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 7.77e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM
Sbjct: 85  ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE
Sbjct: 145 DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 186

[Close]

BLAST of Cucsat.G18070.T2 vs. NCBI nr
Match: KAE8646781.1 (hypothetical protein Csa_005116, partial [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 1.15e-60
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM
Sbjct: 99  ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 158

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE
Sbjct: 159 DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 200

[Close]

BLAST of Cucsat.G18070.T2 vs. NCBI nr
Match: KAA0039744.1 (hypothetical protein E6C27_scaffold122G00040 [Cucumis melo var. makuwa] >TYK24752.1 hypothetical protein E5676_scaffold266G003150 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 2.33e-54
Identity = 90/102 (88.24%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           +LLESGYTS TFSIERFRYN+AQF+FEGPNGLLR+VNFLLTPVVRPL IG+IDLSAFV+M
Sbjct: 85  QLLESGYTSFTFSIERFRYNHAQFRFEGPNGLLREVNFLLTPVVRPLSIGEIDLSAFVTM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFSNIISEYHMFDYV+VIIT+RRVSFSYAIIQETIITP+
Sbjct: 145 DSQEFSNIISEYHMFDYVQVIITNRRVSFSYAIIQETIITPQ 186

[Close]

BLAST of Cucsat.G18070.T2 vs. NCBI nr
Match: XP_004138491.3 (uncharacterized protein LOC101219791 [Cucumis sativus] >KGN45689.2 hypothetical protein Csa_005131 [Cucumis sativus])

HSP 1 Score: 168 bits (425), Expect = 1.24e-49
Identity = 87/102 (85.29%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELLESGYTSLTFSIERFR+NYAQFKFEGPNGLLR+VNF LTP+VRPLRIGQIDLSAFV+M
Sbjct: 85  ELLESGYTSLTFSIERFRHNYAQFKFEGPNGLLREVNFRLTPIVRPLRIGQIDLSAFVTM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFS IIS+Y+MFDYVEVIITSRRVSFS + IQET I+ E
Sbjct: 145 DSQEFSYIISQYNMFDYVEVIITSRRVSFSSSTIQETTISAE 186

[Close]

BLAST of Cucsat.G18070.T2 vs. NCBI nr
Match: XP_038876014.1 (uncharacterized protein LOC120068348 [Benincasa hispida])

HSP 1 Score: 124 bits (311), Expect = 1.78e-32
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELL+SGYTS TFSI       A+ KFEGPNGLL ++ F L     PL +G+ DLS FVS+
Sbjct: 84  ELLDSGYTSFTFSIIEPYEERAKLKFEGPNGLLHEIEFKLYYSHHPLYVGEFDLSVFVSL 143

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFS+I+ EYHMFDYV V ITS RV+FSYAI+QETI+TP+
Sbjct: 144 DSQEFSSIVDEYHMFDYVHVTITSTRVTFSYAIVQETILTPQ 185

[Close]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL
Match: A0A0A0KFM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 3.76e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM
Sbjct: 85  ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE
Sbjct: 145 DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 186

[Close]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL
Match: A0A5D3DMK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003150 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.13e-54
Identity = 90/102 (88.24%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           +LLESGYTS TFSIERFRYN+AQF+FEGPNGLLR+VNFLLTPVVRPL IG+IDLSAFV+M
Sbjct: 85  QLLESGYTSFTFSIERFRYNHAQFRFEGPNGLLREVNFLLTPVVRPLSIGEIDLSAFVTM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFSNIISEYHMFDYV+VIIT+RRVSFSYAIIQETIITP+
Sbjct: 145 DSQEFSNIISEYHMFDYVQVIITNRRVSFSYAIIQETIITPQ 186

[Close]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL
Match: A0A0A0KA18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006750 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.38e-48
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ELLESG TSLTFSIERFR+NYAQFKFEGPNGLLR+VNF LTP+VRPLRIGQIDLSAFV+M
Sbjct: 85  ELLESGCTSLTFSIERFRHNYAQFKFEGPNGLLREVNFRLTPIVRPLRIGQIDLSAFVTM 144

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFS IIS+Y+MFDYVEVIITSRRVSFS + IQET I+ E
Sbjct: 145 DSQEFSYIISQYNMFDYVEVIITSRRVSFSSSTIQETTISAE 186

[Close]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL
Match: A0A1S3CBB9 (uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 2.79e-27
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           +L +SGYTS +FSI     + AQ KF+GPNGLL + NF L     PLRI   DLS FVSM
Sbjct: 83  DLQDSGYTSFSFSIGP-NPDLAQIKFQGPNGLLHETNFELVYSHHPLRIPDFDLSVFVSM 142

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           DS+EFSN+IS+YHMFD V V ITS RV FSY+I+QETI+  +
Sbjct: 143 DSQEFSNVISQYHMFDDVHVTITSERVIFSYSIMQETILNQQ 183

[Close]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL
Match: A0A6J1H801 (uncharacterized protein LOC111460397 OS=Cucurbita moschata OX=3662 GN=LOC111460397 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 3.27e-26
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   ELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDVNFLLTPVVRPLRIGQIDLSAFVSM 60
           ++ ESG+ SLTF++       A+ KF+ PNGL  DV F L P + PL +G  D S+FVS+
Sbjct: 74  DMEESGFNSLTFTVTYPE--SAELKFQAPNGLSNDVEFELIPSLDPLEVGDFDFSSFVSL 133

Query: 61  DSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITPE 102
           +SEEF NI++EYHMFDYV V +TS RV FSYAI+ ETI+T E
Sbjct: 134 ESEEFVNIVTEYHMFDYVHVTVTSTRVIFSYAIMLETILTQE 173

The following BLAST results are available for this feature:

BLAST of Cucsat.G18070.T2 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G18070.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743834.1	7.77e-61	100.00	uncharacterized protein LOC105435987 [Cucumis sativus]	[more]
KAE8646781.1	1.15e-60	100.00	hypothetical protein Csa_005116, partial [Cucumis sativus]	[more]
KAA0039744.1	2.33e-54	88.24	hypothetical protein E6C27_scaffold122G00040 [Cucumis melo var. makuwa] >TYK2475...	[more]
XP_004138491.3	1.24e-49	85.29	uncharacterized protein LOC101219791 [Cucumis sativus] >KGN45689.2 hypothetical ...	[more]
XP_038876014.1	1.78e-32	62.75	uncharacterized protein LOC120068348 [Benincasa hispida]	[more]

BLAST of Cucsat.G18070.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFM5	3.76e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1	[more]
A0A5D3DMK7	1.13e-54	88.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KA18	1.38e-48	84.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006750 PE=4 SV=1	[more]
A0A1S3CBB9	2.79e-27	59.80	uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=...	[more]
A0A6J1H801	3.27e-26	54.90	uncharacterized protein LOC111460397 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 4..105 e-value: 2.3E-5 score: 25.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G18070	Cucsat.G18070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G18070.T2.E1	Cucsat.G18070.T2.E1	exon
Cucsat.G18070.T2.E2	Cucsat.G18070.T2.E2	exon
Cucsat.G18070.T2.E3	Cucsat.G18070.T2.E3	exon
Cucsat.G18070.T2.E4	Cucsat.G18070.T2.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G18070.T2.C1	Cucsat.G18070.T2.C1	CDS
Cucsat.G18070.T2.C2	Cucsat.G18070.T2.C2	CDS
Cucsat.G18070.T2.C3	Cucsat.G18070.T2.C3	CDS
Cucsat.G18070.T2.C4	Cucsat.G18070.T2.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G18070.T2	Cucsat.G18070.T2-protein	polypeptide