Cucsat.G17949.T6 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G17949.T6
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	exosome complex component RRP41-like
Location	ctg3345: 1774782 .. 1778502 (+)
RNA-Seq Expression	Cucsat.G17949.T6
Synteny	Cucsat.G17949.T6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTAGGGAATTAAGCCCTTGTCTGGCGCCCTCACCCGCTTCCAAGGTTCATCCCAATCGTTGGCTCCTCGGTCTCTACCATAACACACAACTCTTTTCGATCTCTTTCAACTCTTAATAGCCCATTCTCTAAACCGATCGATTCTGGGTTTTTGTGTTCATTGCCTTGACGGCCTCAGGTACCTTTTTTTTTTTGCATTAATTATAGGTTTTGAACCCTAAATTCTGGTTTTGTTTGCCAGTTTTCTTTTGCCGAAATGTAGTTTTTTCTTTTTTTTTGTGTGTATTTTTCCATGGAGATTAGCTACTGAGGCCCTTCCATTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCCTTCTAACTTGTCAACGGAGTCATTCATTGGCGTTCTAAATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCATTTCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACATTATATCGTTATGTTATTGTTTCATTTAATGTCTATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTCGAGGTTATTGTTCTCGATCAGTTTATCATAAGTACTAAGCACCCTCGCATTATTTCTGCTGTCTCAATCTTGTGACCACGTTATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCACGTGGAGATAGATGAGCTACTTCTCCCACTCCCAATTTATTTTGAGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCGTTGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAATAAGCGTTAACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGTTATCTTGTCTTTCGACATTGAAGTCTAACTGGAAGATTCTCCCTTTGATTCGATTCAGTTAGTAGTTGATCATAGAGTCCTTGAGGATTTTGAACATATGTTGTTTTACTTGGTGGTTTTGACATTTCTGTTGTTAAGTCTTGGACAAATATCATCTGTTTAGAAACCAAACTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTGACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTTGCCCATTTGATGAACTTGCTATTCCTTTCCTTTAATCATTTAAATCATTTGCTACTTTTTTGCAGTATTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACTCCTCTTCTTCTATTTAGTTTATATCTTTTTACTGTTGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTTTATGTGTTTGATCTATAAGACGAATTTACCGTGAAGAAGATAGACTATTACAGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTAAGATGACTTGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTCTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCCATGATGTACTTTCTTTCCATACTGGCATCAAGTTGGAATCAGATCCAACCATTATTCTCCGTATGCAACCAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCTCGACTGTCCTGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAGCCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTTTTTGGTTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGGGTTCTGGCCTATTTTCTGCTCTCTGCAACTGAGGAAGATATTTTTCCGCACAAAATGACCTTTCGCATTGGCTGTCTTGATTGCAGAACTTCATTTTTTAAAAAAGAATTTTGGGTTCTGTTTCCAACATAAGGCACTGATGGATCTTTATTCTATTATGATTATGTAACTCTCGGTGTCTACCATACGAATTACCATTTTAACTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTCTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAAGAAGAGTGATGTCTAATGTCTCTTTTTAGTTTTAGTAGGGAAATCTCAACACCCCTTCCCCTTCCATCCCCAATTTTGATGAGAAAGAAAAGTATGTAAAATCTTTGGAAAATGGTTGATTTGGATTTTGCATCAAAGTAAAAAGTAGCAGAGAAGTATTCATTGGTTGGTGGCTGACCACAGTAAAAAACAACTCCAATGGCTGAAGAAGCAAAGTTGACTTGAAACCTCTTTTTCCTTTTTTTTTTTTTTTCTCTTTTCCTTTTGGTTTTTTAGCGTTGGTAAGTCAAGTCAAAAGCCTTATCCTCCTACTTCTACGGTTCTACCACGCTCCATTTTGAAGTCTATTCTCTAGTCAAAGTCTATTTCATTCTTTGTATTTTTTTTTTCTTTTTGAAATGTTTAGTTATGATCCTTTTAACACACGGATTCCATAGAGGCAAACAAAGCCATTGACTATACTCTCGATTCTTGTTTTGCAAAATCCTAGTACAAGTTAACATGGGATTCCAAAGCTTATGTAAGCTTTGACTTATTCCTTGGAAGATTTCTCTCTGCCTTATCTTCTCT

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTTTATGTGTTTGATCTATAA

Protein sequence

MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSKYRIFFYVFDL

Homology

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BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.9e-56
Identity = 105/149 (70.47%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R  +F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 150
           K+LEG I++E+FPKTTVDVFALVLESGGS
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGS 148

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BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 9.2e-17
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 39  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 98
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 99  YTTFSTPVRG---QGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGS 150
              FS   RG   QGSE +D S+ L +SL   + L  +P++ +DV  +VLE+ GS
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGS 151

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BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot
Match: A0RXU1 (Exosome complex component Rrp41 OS=Cenarchaeum symbiosum (strain A) OX=414004 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 47/126 (37.30%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 30  DVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSD 89
           D N +R DGR   + R      G +N A+GSAY EFG+ K++  +FGPR+   K M+ ++
Sbjct: 12  DENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVRTE 71

Query: 90  IGRLNCSVSYTTFSTPVRGQGSENK---DFSSMLHKSLEGAIILESFPKTTVDVFALVLE 149
            G L C    + FS   R + + ++   + S ++ ++LE +++LE FP+T VDVF  VL+
Sbjct: 72  TGILRCRYHMSPFSVSERKKPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIEVLQ 131

Query: 150 S-GGSK 151
           + GGS+
Sbjct: 132 ADGGSR 137

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BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot
Match: O26779 (Exosome complex component Rrp41 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=rrp41 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRL 93
           VR DGR F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   +
Sbjct: 16  VREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVI 75

Query: 94  NCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 149
            C  +   FS   R   G    + + S +  ++L  A+ILE FP++ +DVF  VLE+ G
Sbjct: 76  RCRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134

[Close]

BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot
Match: A9A5C9 (Exosome complex component Rrp41 OS=Nitrosopumilus maritimus (strain SCM1) OX=436308 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 30  DVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSD 89
           D N  R DGR   + R    + G +  A GS+Y EFG+ K++V VFGPR+   K M  +D
Sbjct: 12  DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTD 71

Query: 90  IGRLNCSVSYTTFSTPVRGQGSENK---DFSSMLHKSLEGAIILESFPKTTVDVFALVLE 149
            G L        FS   R   + ++   + S ++ ++LE A++LE FP+T VDVF  VL+
Sbjct: 72  TGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQ 131

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BLAST of Cucsat.G17949.T6 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 3.96e-101
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           KSLEGAIILESFPKTTVDVFALVLESGGS
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 291 bits (746), Expect = 1.84e-97
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAKKATPTTTT-YSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGS 149
           HKSLEGAIILE+FPKTTVDVFALVLESGGS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGS 150

[Close]

BLAST of Cucsat.G17949.T6 vs. NCBI nr
Match: XP_022140702.1 (exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exosome complex component RRP41-like [Momordica charantia])

HSP 1 Score: 284 bits (726), Expect = 1.89e-94
Identity = 136/149 (91.28%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT+HKTRP +FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAIILE+FPKTTVD+FALVLESGGS
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. NCBI nr
Match: KAG7010638.1 (Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (725), Expect = 2.52e-94
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAIILE+FPKTTVDVFALVLESGGS
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283 bits (725), Expect = 2.78e-94
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAIILE+FPKTTVDVFALVLESGGS
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 301 bits (770), Expect = 1.92e-101
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           KSLEGAIILESFPKTTVDVFALVLESGGS
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 291 bits (746), Expect = 8.89e-98
Identity = 146/150 (97.33%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAKKATPTTTT-YSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGS 149
           HKSLEGAIILE+FPKTTVDVFALVLESGGS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGS 150

[Close]

BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 284 bits (726), Expect = 9.17e-95
Identity = 136/149 (91.28%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT+HKTRP +FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAIILE+FPKTTVD+FALVLESGGS
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGS 149

[Close]

BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 283 bits (725), Expect = 1.35e-94
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAIILE+FPKTTVDVFALVLESGGS
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGS 149

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BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 283 bits (725), Expect = 1.35e-94
Identity = 138/149 (92.62%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGS 149
           K+LEGAII E+FPKTTVDVFALVLESGGS
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGS 149

The following BLAST results are available for this feature:

BLAST of Cucsat.G17949.T6 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	5.9e-56	70.47	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	9.2e-17	43.48	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
A0RXU1	2.7e-16	37.30	Exosome complex component Rrp41 OS=Cenarchaeum symbiosum (strain A) OX=414004 GN...	[more]
O26779	3.0e-15	36.97	Exosome complex component Rrp41 OS=Methanothermobacter thermautotrophicus (strai...	[more]
A9A5C9	4.3e-14	37.40	Exosome complex component Rrp41 OS=Nitrosopumilus maritimus (strain SCM1) OX=436...	[more]

BLAST of Cucsat.G17949.T6 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145749.1	3.96e-101	100.00	exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ...	[more]
XP_008463959.1	1.84e-97	97.33	PREDICTED: exosome complex component RRP41-like [Cucumis melo]	[more]
XP_022140702.1	1.89e-94	91.28	exosome complex component RRP41-like [Momordica charantia] >XP_022140703.1 exoso...	[more]
KAG7010638.1	2.52e-94	92.62	Exosome complex component RRP41-like protein [Cucurbita argyrosperma subsp. argy...	[more]
KAG6570792.1	2.78e-94	92.62	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]

BLAST of Cucsat.G17949.T6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK6	1.92e-101	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A1S3CKF3	8.89e-98	97.33	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A6J1CHT0	9.17e-95	91.28	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JDA9	1.35e-94	92.62	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	1.35e-94	92.62	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 5..153 e-value: 2.1E-37 score: 130.7
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 43..149 e-value: 3.5E-23 score: 82.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 8..150
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 8..150
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 33..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G17949	Cucsat.G17949	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T6.E1	Cucsat.G17949.T6.E1	exon
Cucsat.G17949.T6.E2	Cucsat.G17949.T6.E2	exon
Cucsat.G17949.T6.E3	Cucsat.G17949.T6.E3	exon
Cucsat.G17949.T6.E4	Cucsat.G17949.T6.E4	exon
Cucsat.G17949.T6.E5	Cucsat.G17949.T6.E5	exon
Cucsat.G17949.T6.E6	Cucsat.G17949.T6.E6	exon
Cucsat.G17949.T6.E7	Cucsat.G17949.T6.E7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T6.C1	Cucsat.G17949.T6.C1	CDS
Cucsat.G17949.T6.C2	Cucsat.G17949.T6.C2	CDS
Cucsat.G17949.T6.C3	Cucsat.G17949.T6.C3	CDS
Cucsat.G17949.T6.C4	Cucsat.G17949.T6.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T6	Cucsat.G17949.T6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity