Cucsat.G17949.T18 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G17949.T18
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	exosome complex component RRP41-like
Location	ctg3345: 1774940 .. 1778497 (+)
RNA-Seq Expression	Cucsat.G17949.T18
Synteny	Cucsat.G17949.T18

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCATTGCCTTGACGGCCTCAGGTACCTTTTTTTTTTTGCATTAATTATAGGTTTTGAACCCTAAATTCTGGTTTTGTTTGCCAGTTTTCTTTTGCCGAAATGTAGTTTTTTCTTTTTTTTTGTGTGTATTTTTCCATGGAGATTAGCTACTGAGGCCCTTCCATTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCCTTCTAACTTGTCAACGGAGTCATTCATTGGCGTTCTAAATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCATTTCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACATTATATCGTTATGTTATTGTTTCATTTAATGTCTATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTCGAGGTTATTGTTCTCGATCAGTTTATCATAAGTACTAAGCACCCTCGCATTATTTCTGCTGTCTCAATCTTGTGACCACGTTATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCACGTGGAGATAGATGAGCTACTTCTCCCACTCCCAATTTATTTTGAGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCGTTGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAATAAGCGTTAACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGTTATCTTGTCTTTCGACATTGAAGTCTAACTGGAAGATTCTCCCTTTGATTCGATTCAGTTAGTAGTTGATCATAGAGTCCTTGAGGATTTTGAACATATGTTGTTTTACTTGGTGGTTTTGACATTTCTGTTGTTAAGTCTTGGACAAATATCATCTGTTTAGAAACCAAACTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTGACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTTGCCCATTTGATGAACTTGCTATTCCTTTCCTTTAATCATTTAAATCATTTGCTACTTTTTTGCAGTATTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACTCCTCTTCTTCTATTTAGTTTATATCTTTTTACTGTTGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTTTATGTGTTTGATCTATAAGACGAATTTACCGTGAAGAAGATAGACTATTACAGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTAAGATGACTTGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTCTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCCATGATGTACTTTCTTTCCATACTGGCATCAAGTTGGAATCAGATCCAACCATTATTCTCCGTATGCAACCAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCTCGACTGTCCTGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAGCCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTTTTTGGTTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGGGTTCTGGCCTATTTTCTGCTCTCTGCAACTGAGGAAGATATTTTTCCGCACAAAATGACCTTTCGCATTGGCTGTCTTGATTGCAGAACTTCATTTTTTAAAAAAGAATTTTGGGTTCTGTTTCCAACATAAGGCACTGATGGATCTTTATTCTATTATGATTATGTAACTCTCGGTGTCTACCATACGAATTACCATTTTAACTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTCTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAAGAAGAGTGATGTCTAATGTCTCTTTTTAGTTTTAGTAGGGAAATCTCAACACCCCTTCCCCTTCCATCCCCAATTTTGATGAGAAAGAAAAGTATGTAAAATCTTTGGAAAATGGTTGATTTGGATTTTGCATCAAAGTAAAAAGTAGCAGAGAAGTATTCATTGGTTGGTGGCTGACCACAGTAAAAAACAACTCCAATGGCTGAAGAAGCAAAGTTGACTTGAAACCTCTTTTTCCTTTTTTTTTTTTTTTCTCTTTTCCTTTTGGTTTTTTAGCGTTGGTAAGTCAAGTCAAAAGCCTTATCCTCCTACTTCTACGGTTCTACCACGCTCCATTTTGAAGTCTATTCTCTAGTCAAAGTCTATTTCATTCTTTGTATTTTTTTTTTCTTTTTGAAATGTTTAGTTATGATCCTTTTAACACACGGATTCCATAGAGGCAAACAAAGCCATTGACTATACTCTCGATTCTTGTTTTGCAAAATCCTAGTACAAGTTAACATGGGATTCCAAAGCTTATGTAAGCTTTGACTTATTCCTTGGAAGATTTCTCTCTGCCTTATCT

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAA

Protein sequence

MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE

Homology

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BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 5.1e-102
Identity = 185/257 (71.98%), Postives = 218/257 (84.82%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R  +F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEG I++E+FPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
            GK+L+ID V EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRSCLKESAVTISE 258
            EIMR CLK+SA    E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 84/222 (37.84%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 39  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 98
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 99  YTTFSTPVRG---QGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVV 158
              FS   RG   QGSE +D S+ L +SL   + L  +P++ +DV  +VLE+ GS L   
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHA 156

Query: 159 ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEE------ENYQD--GSLMITCM 218
           ++CAS+ALADAGI +YD+V   ++   G   L+D    E      E Y D  G + +  +
Sbjct: 157 VTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALL 216

Query: 219 PSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 249
           P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Sbjct: 217 PNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

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BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.6e-29
Identity = 81/241 (33.61%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I++
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-28
Identity = 80/241 (33.20%), Postives = 129/241 (53.53%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I++
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot
Match: B6YSI2 (Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 79/241 (32.78%), Postives = 126/241 (52.28%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE  
Sbjct: 4   KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           D+F  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I+E
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243

[Close]

BLAST of Cucsat.G17949.T18 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 506 bits (1303), Expect = 1.32e-180
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           VEIMRSCLKESAVTISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 493 bits (1268), Expect = 2.96e-175
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATPTTTT-YSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAVTISEE 258
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of Cucsat.G17949.T18 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida])

HSP 1 Score: 479 bits (1233), Expect = 6.18e-170
Identity = 242/258 (93.80%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPT+ KTRP +FRT DV+WVR DGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTIQKTRPPIFRTGDVDWVRSDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAI+LE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           VEIMRSCLKESA TISEE
Sbjct: 241 VEIMRSCLKESAATISEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 478 bits (1230), Expect = 1.77e-169
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 478 bits (1230), Expect = 1.77e-169
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 506 bits (1303), Expect = 6.39e-181
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           VEIMRSCLKESAVTISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 493 bits (1268), Expect = 1.44e-175
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATPTTTT-YSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATPTTTT YSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAVTISEE 258
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 478 bits (1230), Expect = 8.58e-170
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 478 bits (1230), Expect = 8.58e-170
Identity = 240/258 (93.02%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAII E+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 473 bits (1217), Expect = 7.93e-168
Identity = 237/258 (91.86%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT+HKTRP +FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 258
           V+IMRSCLKESA TIS++
Sbjct: 241 VKIMRSCLKESA-TISQD 257

The following BLAST results are available for this feature:

BLAST of Cucsat.G17949.T18 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	5.1e-102	71.98	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	1.1e-30	37.84	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
Q8U0L9	7.6e-29	33.61	Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ...	[more]
O59223	1.3e-28	33.20	Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D...	[more]
B6YSI2	2.2e-28	32.78	Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=52385...	[more]

BLAST of Cucsat.G17949.T18 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145749.1	1.32e-180	100.00	exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ...	[more]
XP_008463959.1	2.96e-175	97.30	PREDICTED: exosome complex component RRP41-like [Cucumis melo]	[more]
XP_038900607.1	6.18e-170	93.80	exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_03890060...	[more]
KAG6570792.1	1.77e-169	93.02	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_022986160.1	1.77e-169	93.02	exosome complex component RRP41-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G17949.T18 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK6	6.39e-181	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A1S3CKF3	1.44e-175	97.30	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A6J1JDA9	8.58e-170	93.02	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	8.58e-170	93.02	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1CHT0	7.93e-168	91.86	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 43..167 e-value: 4.0E-29 score: 101.8
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 30..255 e-value: 2.0E-59 score: 202.9
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 171..231 e-value: 9.6E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 9..252
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 9..252
None	No IPR available	CDD	cd11371	RNase_PH_MTR3	coord: 44..250 e-value: 1.55205E-100 score: 289.851
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 32..198
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 169..256

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G17949	Cucsat.G17949	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T18.E1	Cucsat.G17949.T18.E1	exon
Cucsat.G17949.T18.E2	Cucsat.G17949.T18.E2	exon
Cucsat.G17949.T18.E3	Cucsat.G17949.T18.E3	exon
Cucsat.G17949.T18.E4	Cucsat.G17949.T18.E4	exon
Cucsat.G17949.T18.E5	Cucsat.G17949.T18.E5	exon
Cucsat.G17949.T18.E6	Cucsat.G17949.T18.E6	exon
Cucsat.G17949.T18.E7	Cucsat.G17949.T18.E7	exon
Cucsat.G17949.T18.E8	Cucsat.G17949.T18.E8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T18.C1	Cucsat.G17949.T18.C1	CDS
Cucsat.G17949.T18.C2	Cucsat.G17949.T18.C2	CDS
Cucsat.G17949.T18.C3	Cucsat.G17949.T18.C3	CDS
Cucsat.G17949.T18.C4	Cucsat.G17949.T18.C4	CDS
Cucsat.G17949.T18.C5	Cucsat.G17949.T18.C5	CDS
Cucsat.G17949.T18.C6	Cucsat.G17949.T18.C6	CDS
Cucsat.G17949.T18.C7	Cucsat.G17949.T18.C7	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T18	Cucsat.G17949.T18-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity