Cucsat.G1753.T8 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1753.T8
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ATP-dependent RNA helicase eIF4A isoform X2
Location	ctg1002: 1629961 .. 1635617 (-)
RNA-Seq Expression	Cucsat.G1753.T8
Synteny	Cucsat.G1753.T8

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTAAAAGGAAAAGAAAAAACTAGTCATACCCACTGGCCAGGTGCGTCTTTTAAAGATCAAACTTTGGAAGCAAGCAGGCGAGAGCGCTGTGCTGTAGCGCAGCGACCATGGCAATCGATCCATTTGAAGCATTCTCGCCTCCCTCTCACTCATCTTCCCATTTCAGGTATTGCTGTTGCTTCTTCCACCTCTTGAATTTTACCAACTTCTTTCTCCATATTCATCAATCCCCATTTTGTTTCACTTTCTCAGTCAACAGCGCCACTTCTATGTTGCCGTTGACAGGCTCCAGTTTAAGATGGTCCCCTTCTCTCAATCTATGCTCATACACATCTTTGAGATTCAAAGTTCAATGTTTAGTTGAAATTTTTTGTTGGGTTGTAATTTGCTTGGTCAATTTTTTTTCTGTTCCTTCTGTGCGTTGTGTTTTGGCAGGAAACCTTAGTGGGCCTGTTGGACGTGGCCGGTCGCCGTCCGTCGTTGCCGATGGTTGTGTGTTGTAGTTCTCGTGACGAACTCGATTCTGTCTGCTCCGCCGTCTCCAACCTCCATTACATCTCATTGGCCTCTTTGGTATTGTTATTTCTGCTCAATAATACCTCTTCTAGCTGAAATTCTGAAATTGTTCTAGAAATGCCCATGCCTCAGCCTGATATGCAATTCTTTTCTGCCACTCAACGAATAATTTGATCTCGAATCAATTACTGACCTGAATCTATCTTCAACGTATGAATTGCCGATATGATAGGACACTTGGATTAGGAGTTATAAACTCACCTCGAACAGATCAGTTCTATGGGCTCTAATGTTTGTCCGGTCCTAATTCTATGGATGAAGTGCTTTGATGGCTTGAGTGCTATCGATATAATTGAAAGCACTCATGTTAATACACTTGGATCAGAATCTAATTATGTATTTTCAGTTGGTAATGAAAACCAACTGATGAAAGTTGAAATTAACCAATACAGATAATAATTGTGCTATGTTGATTCAACTTAAGGAAGCCAGGTGATAGAAATGTTTTCAGGTTAGAGTTAGAAATGATTTTAGGGTAGTAATTAGTGAGGGAATTTATTTTGGTGATTAGTTATCAGTATAGTGAGTAAGAAAGGATGGAAGCAGGCAATTGTTTAGACAGATTTGGTTTGTGTGTCAATCAATAGAGAAGATGTTTCAAACTTTCTAGTACCTCAAACATTTTAGCTTATTATGTAGTTCTTTTGTATTTTATACTTATATATTGTGTCAGTTATTCAGGTTCTATCACTTGTTTGCAACTTAGCGAACTTTTCTTTCCATGACTGATTTTTGCTTACATGTATATAATGTTATATTTTGACTCTTGTTGATATAGTTTATATAGATATGAAAACAAGAACTTTAACTAAGAAAAAAATGAAAGAATACGAGGGAATACAAAAAATTCCTGTTGATGCAGTGACGAGTTAATTGTAACAGTTAGGTATAGTTATTTTGGTTTATTTTAAGTACTTAGATGTTAGATCCTACAGAAATAGAGGATTAATATCTTGTATTGGCATACATTGAATTGTAATAAAGTCTTTCAAGTTATAATCCATGGAGGATTCTCTGCTTGTGATTTTGGCTACACCACCCCTTTTAATGCTTTCTTTTTGTTTAAAGCTAAGAATTTTTCATATGCCTTCTGGGCAAGTGATGATTCAATATCAAATGACTGGATAGTGGATGATTAGTCTGCATGCCGTCAATTGTTGTTTCTGTTGTTTGTTTTAAGATCAAATTTTTGCACTTGTTTCTACTTTCTTTTGCCAGGGGAAATTGCCCTTCTTTTATTTTAATCTTACACCGAGTACCATTCATTTTCTTCCTTCTTCTAGTCATTACTCATGTTGGCATACATATGCAGTAATGACAATTCTGTGATTAATCTGAGGATGGATGAGACTCACTGTATGACGATAATGTAATGTATTTATTCCTTGTCATATTCAGTACAGTGACCTTGCCGAAGCAGACCGTTCACTGATTTTAGAGAAATTTCGGCAAACAACATCGAGGTGGAGCCAAAAGTTCAGTTCTCTATCAGAAGAAAAATGTGAGGCTGAGAAAGTTGGAGAAAAATCTCACATGATTGTAGTAACAGACGCCTGCCTTCCACTTCTTGCTTCTGGGGAGTCACCTCTTTCTGCCCACGTTTTGATAAATTATGAGATACCAACAAAGAAGGTGCAGTTATCAGACTACAGGACTATATAAGTTGATAGTTTGTAAAAATATGCATTGGATTATATCAATGGGTATGAGAGTGATGTGAAGTTACAACTGGTTTTTGCTTCACTTTTATTTTCGTCTAAATATTATAGAACTTTTTATAGCTTCTGTATTGCTCATGATGTGCATCTGAAATCATTTTTCAACCCTTTGAATCGTAGTGGTAGCTCTGAGTTTCGAACTTCAATTTCTATGAATAAATTGCATGTATAATGTATTAACTGTTCCTATTCCTGTTGTGGTACTGGTCAGTTCTTAAACAAACTTGTAATACCACATATTTGAAAAGTTGTATGAAGTAGATTCACAAGCAAATTGTTTATTTATTGTGACAGCACTCGGTGCTCCTAAACTTCATGTGGTTTTTATTGCAGGAAACATATATGAGGCGCATGACTACCTGCTCGGCTTCAGGTTATTCTTTTATACTGCAACGGATTATAATATAAGTTGCCCAGTGTAGGTTCTTCTTCATACACAAGAGTTGCTTCCTTTGCGTTTTTATGCAGATGGGATCTTGATCAACATGGTTGTTGGGGGAGAAGTGGTAACTCTCAAAAGCATTGAAGAAAGTAGTGGCCTTGTTATTGCTGAGATGCCCATTAATGTAAGTATATTACTACTTGCTTCGACCTCCATGTCTTTTGATAGATATAAATTTTTGCTTAGGAAATCATTCTCAAATAATTAGTTCTGAATATTAATTGGGCCTTTTTCTACAAAACAAAAAAGTCAAACTGAAGTTGGAAAGTTTGCAGATTTCTGAAATTTTGTAAGGATGTCGGCTACAATGGAACATCTAAGGACAACACAGAAGGTTTTATTAGAAGGGGTTTTACCCCTACCAACTGATCATATTGATAGTTCTCAATGATAACTTATGTTGGTTGACGTGTACTTAAAGAGAGTTTTCCAGTCTATTGAACAGGGGGCTATTTATCGTGAGGATGGAATGCTGAGATAATTTGGTGTTCAATCATTTTGGTTCATTTTCCTTTTTACCAGTGTTTTTGAAAATCAAGCTAAGTTTTAATTAAAAGAGAGCTTTAAAACACGTTGTAGAATTTGACAATAATATATCTCCTTTCTTAAACTCCTTTAAATTTCTTTCTTTCCAAGACTACGGATAGGCGGAAGGGTGGCAAAATTTTAGGATGTTTGTGAGATTCTTTGTACACATTGTTGTGCTAATCGTTGATGTGGTTGGTTTATAGTAATAGTTCATAATGTTAATCCAATCTAACATAATTGGTTTGGGTATATATATATTGAACGAGAAGTTCAAATTCAAATTCTACTATTTGATTTTGTTTTAAAGTTTGAATTAACCTACGTTTAGTTAAAATAACGTTGGGTTCAAATTTTACCATTATCAATATTTGAGAAGTAAAAAAAAAAAAATACCACCGTAAGCAATTATAATTTTTAACATGCACAAATAATAAATTTAAATGTTTGAGAATTAATATATTAATTTTGAACAATAATTGTGATTGAATTAATAAAAATTATGAGTTTAATTGACTTCAAATATATAAGTTTTGGTGTGTAAATTGATTAAGTAAAAATTCAATTTACAATTACTGACTTGAATTTATAATGAGGAAGGACTAAACTAATACATCTATAACTGTCCGATAAGACTAGAAGTAGGTAGATGGGAAAAGCGATCACTTAATTTATCCTCTCCAATAATCCAATATATATCGTTTTGGTTATAGTTTTTTTTAATGGTTTTTCCATGGAAGTTTCAAATTATCAAAATTGGACATTTGAAATGAAAAATAGAGGGACTGATTAAAAACAATACTTAAGAGATAATCATTGTCCTCGTGTCTTATTTTTATAGGCAGGAAGAGAGATCATCCCACGATTTTAAATTAAACATAAAAAAGAGGCAGAATTTGTGACAATGTGCGACCAGTTGTTATTTTGTTGACCTCATTTCCAATAGAATCCAATCTACTACCCCACGCCTCTCTTTCTCTCTCTCTCTCTCTAGTATTAATACCAACACTCACTCTTAACCCATGTGAGTGACAACTGACAACCATGTCGTTTAACACCATTTTTTTTGGTAATTAAGATCTTTAAAATCTATCTCACATGCTAACACATAGTAACTTAAATTAACTTATTCAACTCTCTACAAAACAAGTAAGGAAAAAAATAGCTAGAGAGTAATTCTATAGTAGATTATATGAAACCTAACTACATGCACTGTGGAAGTTCTAACTAATCAAATAAAGCTAACAAATATTCAAAGACACTGTATAGATATTCTGTACTTGATTGTTTTACGTTTGGTTTTGAAAAGAAATCAAAGTCTAGGGACGTCTTGTTAATTAAGTGTCATTTGTACTTAGTTTTGCATTAAAAAGACACAAACCTTAGCCTCTCCCACATGGTCTATTGGTATGGCCAGCTCATTATTTCAATTTTGCAACCTGCCAGTCAAAGATTGCTTCAAATGCCTTCCGCCATTAGCAGCAATTAAGTTTTCTTTTCCAGCCACGCGATCCAACCATCTCTTATCAGCTTCGTTTCAATATTTTATTTCCAGTGACATTTAATTAACCGGATTAAAGAAACTACAATATTTAATTTTGTCCTTTGTGAAGGTACCCAAGTGTTGCTCCGGAGCTATAAATCCAAGGATAGTGTTAAAGGCAGCTTGTTCAGGCGTTTGTGGGGAGAAAGTGTACCAAATGAATGATGGCTTGCTTGGATACGTACAAGAACAAGTCAGATCAGAAGGGACAGTTCCCTCCGATGAGCCCAAGACTGTCCTTTTCCAACGACTTCGTCGAATCATCCAATAATCCCTCCCCCACCAGCACCACCAATAATATTCAGGATCCGAAAATCCTTCCAAACATTCCCCCCTCCGACGACTTCGAATTCTCGCCAAATCCCACTAATCACACCGCCATGACCGCCGCCGACCAGCTCTTCTTCAAGGGAAAATTGTTGCCCACTCTCAGAGACGAGCTTCTCATTGACGACGACGACGAAGACTTTGCTCCAGTGCCCCCGAAAGGTGGGCTACCAAAATGGAAGGAGTTTCTGAGCCTGAAGAGATCCGTTGTTGATGGGCGCTGCACGGCCACCGACAACAACAAAAACAACGATGCCAACCAAAGCAAAATCCCCAAATTGGCCCTCTACGATAACTCCTCATCCCATCTTCCCATAACTTCCTAGTTCCTATATCAGATCCACTGCTATCTTAATTTACTCTTTTACCTTTTTTTTCCCTCTCTAGGAGAAATTGTGATATTGTCGAATTTTTTCTTAATCAGTTGGATGTTGTTGTTCATGTACAAATTTATGTAATGTTTTTGTTTGGCAATTAACATTTCTTTCAATAGAATTATTACCTTTACTTTTTGTAACTGGTTG

Coding sequence (CDS)

ATGGTTGTGTGTTGTAGTTCTCGTGACGAACTCGATTCTGTCTGCTCCGCCGTCTCCAACCTCCATTACATCTCATTGGCCTCTTTGTACAGTGACCTTGCCGAAGCAGACCGTTCACTGATTTTAGAGAAATTTCGGCAAACAACATCGAGGTGGAGCCAAAAGTTCAGTTCTCTATCAGAAGAAAAATGTGAGGCTGAGAAAGTTGGAGAAAAATCTCACATGATTGTAGTAACAGACGCCTGCCTTCCACTTCTTGCTTCTGGGGAGTCACCTCTTTCTGCCCACGTTTTGATAAATTATGAGATACCAACAAAGAAGGAAACATATATGAGGCGCATGACTACCTGCTCGGCTTCAGGTTATTCTTTTATACTGCAACGGATTATAATATAA

Protein sequence

MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSEEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSASGYSFILQRIII

Homology

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BLAST of Cucsat.G1753.T8 vs. ExPASy Swiss-Prot
Match: A7TK55 (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=TIF1 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.3e-04
Identity = 29/113 (25.66%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 2   VVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSE 61
           V+ C++R +++ +   ++  ++ +++S+YSDL + +R +I+++FR  +SR          
Sbjct: 265 VIFCNTRRKVEELTQKLTESNF-TVSSIYSDLPQQERDVIMKEFRSGSSR---------- 324

Query: 62  EKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRM 115
                        +++ TD    LLA G       ++INY++PT KE Y+ R+
Sbjct: 325 -------------ILISTD----LLARGIDVQQVSLVINYDLPTNKENYIHRI 349

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BLAST of Cucsat.G1753.T8 vs. ExPASy Swiss-Prot
Match: Q02748 (Eukaryotic initiation factor 4A OS=Drosophila melanogaster OX=7227 GN=eIF4A PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-04
Identity = 27/113 (23.89%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 2   VVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLSE 61
           V+ C++R ++D +   +S +H  ++++++ D+ + DR +I+++FR  +SR          
Sbjct: 273 VIFCNTRRKVDQLTQEMS-IHNFTVSAMHGDMEQRDREVIMKQFRSGSSR---------- 332

Query: 62  EKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRM 115
                        +++ TD    LLA G       ++INY++P+ +E Y+ R+
Sbjct: 333 -------------VLITTD----LLARGIDVQQVSLVINYDLPSNRENYIHRI 357

[Close]

BLAST of Cucsat.G1753.T8 vs. NCBI nr
Match: XP_004141918.1 (eukaryotic initiation factor 4A-I isoform X3 [Cucumis sativus] >KGN48520.1 hypothetical protein Csa_002994 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 6.54e-77
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 114 EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. NCBI nr
Match: XP_031742373.1 (ATP-dependent RNA helicase eIF4A isoform X2 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 8.51e-77
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS
Sbjct: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120

[Close]

BLAST of Cucsat.G1753.T8 vs. NCBI nr
Match: XP_031742372.1 (ATP-dependent RNA helicase eIF4A isoform X1 [Cucumis sativus])

HSP 1 Score: 236 bits (603), Expect = 4.71e-76
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 114 EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. NCBI nr
Match: TYK12893.1 (ATP-dependent RNA helicase FAL1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (587), Expect = 3.64e-74
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELDSVCSAVSNL YISLASLYSDLAEADR+LILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MIVCCSSRDELDSVCSAVSNLQYISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCE EKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 114 EEKCEGEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. NCBI nr
Match: XP_008440275.1 (PREDICTED: ATP-dependent RNA helicase FAL1 isoform X2 [Cucumis melo])

HSP 1 Score: 228 bits (581), Expect = 1.32e-73
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELDSVCSAVSNL YISLASLYSDLAEADR+LILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MIVCCSSRDELDSVCSAVSNLQYISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCE EKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKE YMRRMTTCSAS
Sbjct: 114 EEKCEGEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKEIYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL
Match: A0A0A0KFR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490840 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 3.17e-77
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 114 EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL
Match: A0A5D3CLW0 (ATP-dependent RNA helicase FAL1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004870 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 1.76e-74
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELDSVCSAVSNL YISLASLYSDLAEADR+LILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MIVCCSSRDELDSVCSAVSNLQYISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCE EKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS
Sbjct: 114 EEKCEGEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL
Match: A0A1S3B1C4 (ATP-dependent RNA helicase FAL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484771 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 6.39e-74
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELDSVCSAVSNL YISLASLYSDLAEADR+LILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MIVCCSSRDELDSVCSAVSNLQYISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCE EKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKE YMRRMTTCSAS
Sbjct: 114 EEKCEGEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKEIYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL
Match: A0A1S3B0P7 (eukaryotic initiation factor 4A-I isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484771 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 7.05e-74
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELDSVCSAVSNL YISLASLYSDLAEADR+LILEKFRQTTSRWSQKFSSLS
Sbjct: 54  MIVCCSSRDELDSVCSAVSNLQYISLASLYSDLAEADRALILEKFRQTTSRWSQKFSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           EEKCE EKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKE YMRRMTTCSAS
Sbjct: 114 EEKCEGEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKEIYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL
Match: A0A6J1KPZ3 (eukaryotic initiation factor 4A-I isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497212 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 1.82e-69
Identity = 107/120 (89.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           M+VCCSSRDELD+VCSAVSNL YISLASLYSDLAEADR+L+LE FRQTTSRWSQK SSLS
Sbjct: 54  MIVCCSSRDELDAVCSAVSNLQYISLASLYSDLAEADRALVLETFRQTTSRWSQKLSSLS 113

Query: 61  EEKCEAEKVGEKSHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTCSAS 120
           ++KCE E+ GEKSHMIVVTDACLPLLASGESPLSAHVLINYE+PTKKETYMRRMTTCSAS
Sbjct: 114 DDKCEVEEDGEKSHMIVVTDACLPLLASGESPLSAHVLINYELPTKKETYMRRMTTCSAS 173

[Close]

BLAST of Cucsat.G1753.T8 vs. TAIR 10
Match: AT4G37020.1 (BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-40
Identity = 80/124 (64.52%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           +VVCCSSRDELD+VCS++S L YISLA+LYSDLA+ +R++++EKFRQ T  W+Q+ +S+ 
Sbjct: 52  IVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERAMVIEKFRQATINWNQQLNSVV 111

Query: 61  EEKCEAEKVGEK---SHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTC 120
           EE  E  + G++   SH++VVTD CLPLL+SGES LSA VLINYE+PTKKETY RR+TTC
Sbjct: 112 EEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSARVLINYELPTKKETYTRRITTC 171

Query: 121 SASG 122
            ASG
Sbjct: 172 LASG 175

[Close]

BLAST of Cucsat.G1753.T8 vs. TAIR 10
Match: AT4G37020.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1). )

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-40
Identity = 80/124 (64.52%), Postives = 103/124 (83.06%), Query Frame = 0


Query: 1   MVVCCSSRDELDSVCSAVSNLHYISLASLYSDLAEADRSLILEKFRQTTSRWSQKFSSLS 60
           +VVCCSSRDELD+VCS++S L YISLA+LYSDLA+ +R++++EKFRQ T  W+Q+ +S+ 
Sbjct: 52  IVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERAMVIEKFRQATINWNQQLNSVV 111

Query: 61  EEKCEAEKVGEK---SHMIVVTDACLPLLASGESPLSAHVLINYEIPTKKETYMRRMTTC 120
           EE  E  + G++   SH++VVTD CLPLL+SGES LSA VLINYE+PTKKETY RR+TTC
Sbjct: 112 EEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSARVLINYELPTKKETYTRRITTC 171

Query: 121 SASG 122
            ASG
Sbjct: 172 LASG 175

The following BLAST results are available for this feature:

BLAST of Cucsat.G1753.T8 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7TK55	4.3e-04	25.66	ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028...	[more]
Q02748	7.3e-04	23.89	Eukaryotic initiation factor 4A OS=Drosophila melanogaster OX=7227 GN=eIF4A PE=1...	[more]

BLAST of Cucsat.G1753.T8 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141918.1	6.54e-77	100.00	eukaryotic initiation factor 4A-I isoform X3 [Cucumis sativus] >KGN48520.1 hypot...	[more]
XP_031742373.1	8.51e-77	100.00	ATP-dependent RNA helicase eIF4A isoform X2 [Cucumis sativus]	[more]
XP_031742372.1	4.71e-76	100.00	ATP-dependent RNA helicase eIF4A isoform X1 [Cucumis sativus]	[more]
TYK12893.1	3.64e-74	96.67	ATP-dependent RNA helicase FAL1 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008440275.1	1.32e-73	95.83	PREDICTED: ATP-dependent RNA helicase FAL1 isoform X2 [Cucumis melo]	[more]

BLAST of Cucsat.G1753.T8 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFR9	3.17e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490840 PE=4 SV=1	[more]
A0A5D3CLW0	1.76e-74	96.67	ATP-dependent RNA helicase FAL1 isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B1C4	6.39e-74	95.83	ATP-dependent RNA helicase FAL1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034847...	[more]
A0A1S3B0P7	7.05e-74	95.83	eukaryotic initiation factor 4A-I isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1KPZ3	1.82e-69	89.17	eukaryotic initiation factor 4A-I isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Cucsat.G1753.T8 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37020.1	3.8e-40	64.52	BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III ...	[more]
AT4G37020.2	3.8e-40	64.52	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..126 e-value: 4.7E-7 score: 31.1
None	No IPR available	PANTHER	PTHR24031:SF359	INITIATION FACTOR 4A-LIKE PROTEIN	coord: 1..120
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 1..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1753	Cucsat.G1753	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1753.T8.E1	Cucsat.G1753.T8.E1	exon
Cucsat.G1753.T8.E2	Cucsat.G1753.T8.E2	exon
Cucsat.G1753.T8.E3	Cucsat.G1753.T8.E3	exon
Cucsat.G1753.T8.E4	Cucsat.G1753.T8.E4	exon
Cucsat.G1753.T8.E5	Cucsat.G1753.T8.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1753.T8.C3	Cucsat.G1753.T8.C3	CDS
Cucsat.G1753.T8.C2	Cucsat.G1753.T8.C2	CDS
Cucsat.G1753.T8.C1	Cucsat.G1753.T8.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1753.T8	Cucsat.G1753.T8-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003743	translation initiation factor activity