Cucsat.G16576.T2 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G16576.T2
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionEukaryotic translation initiation factor 3 subunit H
Locationctg24: 935978 .. 939341 (+)
RNA-Seq ExpressionCucsat.G16576.T2
SyntenyCucsat.G16576.T2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAGAAGCTCTAAAGCTGATATTTTTGTTTTTATTTTTATTTGGGCCGATTATTTGATATACTTCGGCCCATAATCGGAGACGTATCGTTGCTCCTCTTTCCCATCACCGGACAGTGCCGCCGCGGGTAGGGTTTATTCAAACAAAACTCTCCTTCACTTTTGCTCCTCCCAAACACCCACGTACGTAGCTGCTTCTGCGATTCAATTCACTTCTTCCTTCCATCGAATCCTTAATCATGGCAAACTGTACGTACAACCTCTTTCATTTTTCTCTACCTCTTCGTTTGTCCATTTTGAATTTTGATTTGCGAGTTTGATTCTGACGTCTTTTCGCTTCGCTGTTGATGAATTCGTTTTTGTTGCTGCTGCAGCGATGGCTAGATCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCCCCTCTTCGTGTTGTTCAGATTGAAGGATTGGTAAATTTCTCTTATCCCTTTTCTTATTTTGCGTCTCGTTCGATTCGGAAGGTCATTTGAGATTCTTTTTCTGTTCGTTGTTCTTTTAGTGGTTACGTTGAGAAGTTTTCACGCCCGGTCGTACTTATATTTGAAAATTGATAATTAGTGAGACTTCCAGTTTGGATTTATAATTGTTGTTGTATATGTTCTGCATCATTCCTATCGTGTCTGTATTTAGGTTAAAACATTTTGTATCTTCTCCTATAGGTTATATTGAAGATAATCAAGCATTGTAAGGAGTTTTCACCAGCTCTTGTGACCGGTCAACTTCTTGGGCTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGGTATGATGAGGCGGCTTATTTTTTTTTTTATGTTGTTTAATGGTTCAGTTTTTTTTTTCTAGTTTAATTTCTTTTTAATTAATTAACATGAATCTGTTAGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAACAACACTGTTGGATGGTAAGCTTAGTTTTATGATAGTGCATATTTATGGAAAACTTGGCATTATTAATTGGGTAATATAAGGATGTAAAACTTTACCCCGGCACTTTGGTTAGCCTTGGTTAATTTGGTTTGGATAAAGACATACTTTTGCGAATTTGAGGTATTTAAATGTAGACTTGATACTTCATTTGGCTTTTCTTTTGGTTGGGTTCATGAATGTAAAAGAAGTGTACTGTTTTTTGTGCTCCACAATGGAAGTTAATTATTAACTGACAATGTCATCTTGGTGAGCTCTTCTGCTTACTTGATTGGCATTATTGATAAATAGGCTGAAACTAATTTCTTCTCATTATTCATTTGGATTGGTTGACATTTTGATTAATCATATTCAGGTACCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACGTTTATGAATTATCAGGTATTGGTTTAGTCATTCTCTACTTTTATATTTTTCTTCATAGAATTCTTGTAATGACTTTTTCTATTATTTGATAATCAATAAAAATCTGTTTCCATTCTCGAACTCAGAAGTTGGGCCCTCAAAACTTTTAAAGATCTTTATGTGTTATATCTTCATCATTAGAAGCTTTTCTTATTTGCATTTATATTTTAGGGCATTTTTATTGACAGTTAACATAAACTTGCAGGAAAATATTAGGCGGTGCGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTTAAAGCATTGAAACTTTCAGATTCTTTTATGGAACTTTACCGCACCAACAGCTTTACTGGAGAGAAGTATGTAAGCTTATTGCTATTATTCTTTTAAGTCAAGTTATTTATTGGAAACTTTTGTCACTATGCAACAGATTGAGGGAGAAGAACTTATCGTGGGTGGATATTTTTGAGGAAATACCTGTAAGCTCCTTGGACCCTATTTCCTCCTTTGGACTATACTCTAATGATTGGTTGAAAGTCATTATAGGTTTTGAGATTTTTTAAGCAGACAATATAACATAATCACTGCCACGTTTCTTGTTTCTTGTTTCGTTCAGATCAAAGTTTCAAATTCTGCCCTCATTAGTGCCTTTATGACGGAGCTTGAATCTGACTCTCCTGTCACCCAGGTAAAACGTAACTTGTGGGTGCTGTCATCAACATAGGTGATCTAAATTTTATCATTCCGTTTTTTTTTATTGATTGGATTATCACTGTTGCAGTGTGATTATGACCGCTTGCAACTTTCAACCAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTCGAGCAACAGAAGGTTCGTGTCTTCTGTTGAAGTCTTTATGTGCATATTATGATTCATCCTTTCTTTAATTTCTGTTTTATGATTTGTTGTGGCACACTATAAATGAATCTTTTTTGTTCAGTTCCAATTTTACTATCGGAGCCTGACCCGTCAGCAAGCTCAGCAACAATCATGGCTTCAAAAGAGAAGGTAATTCTTTCTTGGTTTTTCACATGAATGTTTTGGTTACATTTGGCTGGCATTGTAATTCCTTACAATCACAATGCGGAATCTTGTTGTAAGATACATTTGCTTATCGTCCAAGTTCATCCATATCTGGTATCTGTTTTGTAGAGCCGAAAACATGACGAGGAAGGCTGCAGGTGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCCGAGCCATCACGTTTGGATAGCTATCTCATAACAAATCAAATAGCAAACTACTGCAATCAAATTAATGGGTACAGCGCTGCTGCCTACTGATCTTATTCTCCAAAAATAATTTTCCACTCCTTGTGATATCTTGTAGAAGCTAACGTGTTTTCTCAATTTCGGAAGAGTTGAATAATAACTTTGTGTGCAATGAAATATTTCAGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTCTTCACGACAACTAATTTTGACGCGTTCTAAGGTCTATTCTCTTCGCCGCATCTTTTTGTAATGCATTGTGTAATTGGGAAGAGATAAAACTAGAGTTTTTACTTTTATATGATGGCGAGCTTCCTAGAGTTGGATGTTGTAATCTATTTGCAATTTATTCAATATTATTGTTTTGAAATGTTCCAAATACTCCCATGTGGTTTTTGGATGATGCCTTTGCTACAACGTTTTTTAAGAAAATTACTTTTTCTTTGAGCAATTTTGGAAGGAAAAAACTTATTAAGCGTTTCTCAAGTGACTTATGTTAAACATTTGAACCAAAGGCTCTACCAATCTGTTCATGAGACTAACTAAT

Coding sequence (CDS)

ATGGCAAACTCGATGGCTAGATCTTTTCTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCCCCTCTTCGTGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGTAAGGAGTTTTCACCAGCTCTTGTGACCGGTCAACTTCTTGGGCTAGATGTTGGTAGTGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAACAACACTGTTGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACGTTTATGAATTATCAGGAAAATATTAGGCGGTGCGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTTAAAGCATTGAAACTTTCAGATTCTTTTATGGAACTTTACCGCACCAACAGCTTTACTGGAGAGAAGTATGTAAGCTTATTGCTATTATTCTTTTAA

Protein sequence

MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKYVSLLLLFF
Homology
[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match: Q9C5Z2 (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana OX=3702 GN=TIF3H1 PE=1 SV=2)

HSP 1 Score: 296.6 bits (758), Expect = 1.9e-79
Identity = 146/169 (86.39%), Postives = 157/169 (92.90%), Query Frame = 0 

Query: 4   SMARSFLQ-VAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEV 63
           +MARSFLQ ++  E VA PLRVVQIEGL +LKIIKHCKEFSP LVTGQLLGLDVGSVLEV
Sbjct: 3   TMARSFLQAISKDEAVAPPLRVVQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLEV 62

Query: 64  TNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETF 123
           TNCFPFP R++DEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST LGSYQTVELIETF
Sbjct: 63  TNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETF 122

Query: 124 MNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 172
           MNYQENI+RCVCIIYDPS+++ GVLALKALKLSDSFMELYR  +FTGEK
Sbjct: 123 MNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match: Q54UD0 (Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum OX=44689 GN=eif3H PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-46
Identity = 89/153 (58.17%), Postives = 118/153 (77.12%), Query Frame = 0 

Query: 20  SPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEA 79
           S L VVQI+GLV+LKIIK CKE+ P LV GQLLGLD+G+ LEV+NCFPFP R++++E   
Sbjct: 14  SKLDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCFPFPPRDQEDENSE 73

Query: 80  DGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENI-RRCVCIIYD 139
             A+YQLEMMR LREVN+D+NTVGWY  T+L S+    +IET  NYQ  I ++CV I+YD
Sbjct: 74  SIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYD 133

Query: 140 PSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 172
           P +++QG L+LK  +L+ SFMEL++  SF+ E+
Sbjct: 134 PIKTSQGTLSLKCYRLTQSFMELFKDQSFSRER 166

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match: A7SA47 (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis OX=45351 GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.1e-38
Identity = 76/150 (50.67%), Postives = 108/150 (72.00%), Query Frame = 0 

Query: 24  VVQIEGLVILKIIKHCKE--FSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADG 83
           +VQ++GL +LKIIKHC+E   S  LV G LLGL   + LE+TNCFPFP+ +  ++ + D 
Sbjct: 17  IVQVDGLTVLKIIKHCEEEGSSGDLVQGVLLGLIQDNRLEITNCFPFPSNKAGDDEDDDD 76

Query: 84  ANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSR 143
            NYQ+E+MR LR VN+D+  VGWYQST+LGSY    L+++  +YQ++I   V +IYDP R
Sbjct: 77  VNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEESVVLIYDPLR 136

Query: 144 SNQGVLALKALKLSDSFMELYRTNSFTGEK 172
           ++QG+L LKA +LSD  M+LY+   F+ +K
Sbjct: 137 TSQGMLTLKAFRLSDEMMKLYKDGEFSADK 166

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match: Q5BDW0 (Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=AN1270 PE=3 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 9.3e-34
Identity = 74/172 (43.02%), Postives = 103/172 (59.88%), Query Frame = 0 

Query: 16  EEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDE 75
           E+  +PL  V++E LV++KIIKHC +  P   TG ++G+DV  VLE+TN FPFP  E   
Sbjct: 3   EKEVTPLTAVKVEALVVMKIIKHCSQVFPTTATGSIVGMDVDGVLEITNTFPFPVVEVPP 62

Query: 76  EIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 135
           E   D A                YQ EM+R LREVNVD N VGWY S  +G++  + +IE
Sbjct: 63  ESHFDNAAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIE 122

Query: 136 TFMNYQENI-RRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 172
               YQ+ +  R V +++DPSRS QG L+L+A +LS  FM  ++ N FT ++
Sbjct: 123 NQFFYQKEMNERTVALVHDPSRSAQGSLSLRAFRLSPKFMAAFKDNKFTSDE 174

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match: Q6AXJ2 (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio OX=7955 GN=eif3ha PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 73/152 (48.03%), Postives = 101/152 (66.45%), Query Frame = 0 

Query: 21  PLRVVQIEGLVILKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIE 80
           P++ +Q++GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP   ED ++E
Sbjct: 18  PVKQIQVDGLVVLKIIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFPQHTED-DVE 77

Query: 81  ADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYD 140
            D   YQ+EMMR LR VN+D+  VGWYQST+ GS+ +  L+++  +YQ  I   V +IYD
Sbjct: 78  FDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYD 137

Query: 141 PSRSNQGVLALKALKLSDSFMELYRTNSFTGE 171
           P ++ QG L LKA +L+   ME+ +   FT E
Sbjct: 138 PLKTAQGSLCLKAYRLTPKLMEICKEKDFTPE 168

[Close]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match: XP_008453973.1 (PREDICTED: eukaryotic translation initiation factor 3 subunit H [Cucumis melo] >TYK16981.1 eukaryotic translation initiation factor 3 subunit H [Cucumis melo var. makuwa])

HSP 1 Score: 340 bits (873), Expect = 2.76e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match: KAA0044605.1 (eukaryotic translation initiation factor 3 subunit H [Cucumis melo var. makuwa])

HSP 1 Score: 340 bits (873), Expect = 2.76e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match: XP_004152102.1 (eukaryotic translation initiation factor 3 subunit H [Cucumis sativus] >KGN53080.1 hypothetical protein Csa_015119 [Cucumis sativus])

HSP 1 Score: 340 bits (873), Expect = 2.76e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match: XP_038880772.1 (eukaryotic translation initiation factor 3 subunit H [Benincasa hispida])

HSP 1 Score: 339 bits (869), Expect = 1.12e-114
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYR+NSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match: PPS01480.1 (hypothetical protein GOBAR_AA19199 [Gossypium barbadense])

HSP 1 Score: 331 bits (849), Expect = 4.19e-114
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMA+SFLQVAATEEV SPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVG VL
Sbjct: 1   MANSMAKSFLQVAATEEVVSPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGIVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFP REEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST LGSYQTVELIE
Sbjct: 61  EVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTILGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKY 172
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYR NSFTGEKY
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRANSFTGEKY 172

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match: A0A5A7TT99 (Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003560 PE=3 SV=1)

HSP 1 Score: 340 bits (873), Expect = 1.34e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match: A0A5D3CYC1 (Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001220 PE=3 SV=1)

HSP 1 Score: 340 bits (873), Expect = 1.34e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match: A0A0A0KTY9 (Eukaryotic translation initiation factor 3 subunit H OS=Cucumis sativus OX=3659 GN=Csa_4G015700 PE=3 SV=1)

HSP 1 Score: 340 bits (873), Expect = 1.34e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match: A0A1S3BYB7 (Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo OX=3656 GN=LOC103494533 PE=3 SV=1)

HSP 1 Score: 340 bits (873), Expect = 1.34e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL
Sbjct: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE
Sbjct: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEK 171

[Close]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match: A0A2P5XDS2 (MPN domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA19199 PE=4 SV=1)

HSP 1 Score: 331 bits (849), Expect = 2.03e-114
Identity = 166/172 (96.51%), Postives = 167/172 (97.09%), Query Frame = 0 

Query: 1   MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVL 60
           MANSMA+SFLQVAATEEV SPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVG VL
Sbjct: 1   MANSMAKSFLQVAATEEVVSPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGIVL 60

Query: 61  EVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIE 120
           EVTNCFPFP REEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST LGSYQTVELIE
Sbjct: 61  EVTNCFPFPIREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTILGSYQTVELIE 120

Query: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKY 172
           TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYR NSFTGEKY
Sbjct: 121 TFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRANSFTGEKY 172

The following BLAST results are available for this feature:
BLAST of Cucsat.G16576.T2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C5Z21.9e-7986.39Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana OX=... [more]
Q54UD02.8e-4658.17Eukaryotic translation initiation factor 3 subunit H OS=Dictyostelium discoideum... [more]
A7SA478.1e-3850.67Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis O... [more]
Q5BDW09.3e-3443.02Eukaryotic translation initiation factor 3 subunit H OS=Emericella nidulans (str... [more]
Q6AXJ21.2e-3348.03Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio OX=7955 GN... [more]
BLAST of Cucsat.G16576.T2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453973.12.76e-115100.00PREDICTED: eukaryotic translation initiation factor 3 subunit H [Cucumis melo] >... [more]
KAA0044605.12.76e-115100.00eukaryotic translation initiation factor 3 subunit H [Cucumis melo var. makuwa][more]
XP_004152102.12.76e-115100.00eukaryotic translation initiation factor 3 subunit H [Cucumis sativus] >KGN53080... [more]
XP_038880772.11.12e-11499.42eukaryotic translation initiation factor 3 subunit H [Benincasa hispida][more]
PPS01480.14.19e-11496.51hypothetical protein GOBAR_AA19199 [Gossypium barbadense][more]
BLAST of Cucsat.G16576.T2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TT991.34e-115100.00Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo var. makuwa... [more]
A0A5D3CYC11.34e-115100.00Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo var. makuwa... [more]
A0A0A0KTY91.34e-115100.00Eukaryotic translation initiation factor 3 subunit H OS=Cucumis sativus OX=3659 ... [more]
A0A1S3BYB71.34e-115100.00Eukaryotic translation initiation factor 3 subunit H OS=Cucumis melo OX=3656 GN=... [more]
A0A2P5XDS22.03e-11496.51MPN domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA19199 P... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 24..157
e-value: 7.0E-12
score: 55.5
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 23..126
e-value: 2.4E-14
score: 53.3
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 1..176
e-value: 8.8E-40
score: 138.5
NoneNo IPR availablePANTHERPTHR10410:SF24EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Hcoord: 4..172
NoneNo IPR availablePANTHERPTHR10410EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATEDcoord: 4..172
IPR037518MPN domainPROSITEPS50249MPNcoord: 25..158
score: 25.828318
IPR027524Eukaryotic translation initiation factor 3 subunit HCDDcd08065MPN_eIF3hcoord: 23..172
e-value: 1.10734E-91
score: 266.44

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G16576Cucsat.G16576gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16576.T2.E1Cucsat.G16576.T2.E1exon
Cucsat.G16576.T2.E2Cucsat.G16576.T2.E2exon
Cucsat.G16576.T2.E3Cucsat.G16576.T2.E3exon
Cucsat.G16576.T2.E4Cucsat.G16576.T2.E4exon
Cucsat.G16576.T2.E5Cucsat.G16576.T2.E5exon
Cucsat.G16576.T2.E6Cucsat.G16576.T2.E6exon
Cucsat.G16576.T2.E7Cucsat.G16576.T2.E7exon
Cucsat.G16576.T2.E8Cucsat.G16576.T2.E8exon
Cucsat.G16576.T2.E9Cucsat.G16576.T2.E9exon
Cucsat.G16576.T2.E10Cucsat.G16576.T2.E10exon
Cucsat.G16576.T2.E11Cucsat.G16576.T2.E11exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16576.T2.C1Cucsat.G16576.T2.C1CDS
Cucsat.G16576.T2.C2Cucsat.G16576.T2.C2CDS
Cucsat.G16576.T2.C3Cucsat.G16576.T2.C3CDS
Cucsat.G16576.T2.C4Cucsat.G16576.T2.C4CDS
Cucsat.G16576.T2.C5Cucsat.G16576.T2.C5CDS
Cucsat.G16576.T2.C6Cucsat.G16576.T2.C6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G16576.T2Cucsat.G16576.T2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001732 formation of cytoplasmic translation initiation complex
biological_process GO:0006508 proteolysis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0042788 polysomal ribosome
molecular_function GO:0070122 isopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity