Cucsat.G15834.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G15834.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	C2H2-type domain-containing protein
Location	ctg2100: 423327 .. 425963 (-)
RNA-Seq Expression	Cucsat.G15834.T2
Synteny	Cucsat.G15834.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCCCCCAATTATCTCCTTCTTTTTATCATATTATTAATTCATCCTTTTTCACACTTCCATATAGCATTACCATATACACAAAAATATATATATATATATATATATTCCTCTCTTTATATATATAATCTCTTCCTCCCACCCCTTTTTCTTCCCATTATTATTCAGCTTCTTCATCATATCATTAAATTATCTAAATGTTGAAACCTTCCTCTTCTTCTTCTTCCACACCCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCCCCCAATTCCGACCAATATTCCATCACCACCAAACGAAAACGAAGACCCGCCGGCACTCCAGGTAATAACAAATAATTATTTTTAACCATTATTATTTCTAATTTTCCAATCAATTCATTAAATTATATTAAATTGAATAAAATTAGATCCGGATGCGGAAGTGGTTTCTTTATCACCCAAGACGCTACTTGAATCTGATCGGTACGTTTGTGAGATATGCAATCAAGGGTTTTCAAAGAGATCAGAATCTCCAGATGCATCGACGGCGCCACAAGGTGCCGTGGAAGTTGGTGAAGAGGGCGGAGGCGGAGAGTAGTAGTAGTAATGTTGTTGTGAAGAAAAAGGTTTTTGTTTGTCCAGAGCCTACGTGTCTACATCATCACCCTTGCCATGCTCTTGGTGATCTAGTTGGGATTAAAAAACACTTCCGGAGAAAGCATAGTAACCAAAAACAGTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATTTCAAACTTATTTCGTACTAGTTTCAGTTCAACCATAATTAACATGAATCATCCCTTTTAAGTAGAAGCTTTAATTTGATTCCTCATATTCACAATCGCTATATATAGAAAGGTTGACAAGTCCATAATTTTGTTGCTTCCTTACTTATCGACGTTAATTGGAGTTTTGTTATCTCTTCTAGTGAATGGGTTCAAAACTTGATTTGATAAGATATCAAATTTAATAGATAAACTAATCAGCTTATGGTTGAGTTGACAGGTGATTTCGGATGACTCTCAATATATAAAGGAATAAAATACATTTTCTTTTTTGTTCGTGTAAAACCTATCAATTATTATATTGTTTTAGGCTTAGAATTACTTTGATTTTCTTCTCTTTATATAAATGGAGGAATTAATATTGAAGAAATAAGGTAGTCGAAGTTTGAATTTATATTAATAATATAATTTATTTATTCATTGTACTATTACATAGTATTTTTCCCATTTATGTAATAAACAAAATTTCCCTTCTTGGTTTACTCTTTTCAGAGTGGAGAGTTTCATAGAGCATCAAGACACTTGCAATCTGCGCCATATGAGGTCCGATCAGTTGCAGTCGGCGGTGGTACGGCCGCCACCACCACCACCACTGTTATTGCAACCCTATAACTCACGATCAGTATCTTACACTGGCGCCTCCACCAGCAACGATCATGCATTTCAAATGGCTAGTACTCCATTACGAGGGTTTCCAATTTTATCATCAAACTCAGATCGAAACATCAACATTAATTTACCCGATCGCCATGATCTTGAGCTCCATCTCTCTTCTCCAAGCTCAGCTTTTTTGAAGCTCTCAATTGGGTCGTCCAACAAGGAGCCAAACGATGACCGTCAACTCGAGCTGGCGATAGCGGAGAAGGCATATGCGGATGAAGCAAGACGAGAGGCAAAACGACAGATCGAAATTGCCGAGGTCGAGTTTGCAAATGCAAAAATGATAAGACAGCAAGCACAAGCGGAATTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAACTCCACCATTATGGAAATCACTTGCCAAACTTGCCGGTTGCATTTTCACGTCAGCTCCGCCATGCCCGAGGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACAACAGAAGGTGATGGAGAGTGAATATATATTTAAAGAGTCTAGAACAATGTGACTAACAATTTTTTTAAAAAACAGTGACTTGTTCGAAAGTTTTAGAAGTATTCTCGTTATGACAATCTTTCTAATAGCCTATTTAGCTTAAGGCTTGATCGAATTTTTGATCCGTAGCCACATTGTTCTAGACTCTTTAAAAAATATATATATCTCATGGATTATATAACTTTTTTGAGACGAAACATGTATTAGAGTTATTAATTTTTTGAGGATTTGTGGCATATGAAAGATGATCAATCGCAAGTTGGAACAATTGAATCAAGATATATGGACGTAGATTGGATTAAAATTTGCATAGGGTCTGGTTTTGTTGTTTGTGTGTGTATTTGCATTTGTATTTGTATTTGTAATTGTATTATTTTTTTTTTTTTTGGGTTTCTTTTTAGACTCATGATTTTGTTGAATTATTGTATATGTGATATGATTATTGCAGTGTCTCGAGGGACGAAAAACTTGAGGTGTTAGGTTTTAATAATTTATGTTGGTTTTTAGCTGCAAAGAAAAATCCCATTATTTGAATTCTTCAAAAGTACAATAATAAT

Coding sequence (CDS)

ATGCGGAAGTGGTTTCTTTATCACCCAAGACGCTACTTGAATCTGATCGGTACGTTTGTGAGATATGCAATCAAGGGTTTTCAAAGAGATCAGAATCTCCAGATGCATCGACGGCGCCACAAGGTGCCGTGGAAGTTGGTGAAGAGGGCGGAGGCGGAGAGTAGTAGTAGTAATGTTGTTGTGAAGAAAAAGGTTTTTGTTTGTCCAGAGCCTACGTGTCTACATCATCACCCTTGCCATGCTCTTGGTGATCTAGTTGGGATTAAAAAACACTTCCGGAGAAAGCATAGTAACCAAAAACAGTGGGTTTGTGACAAATGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATTTCAAACTTATTTCGTACTAGTTTCAGTTCAACCATAATTAACATGAATCATCCCTTTTAA

Protein sequence

MRKWFLYHPRRYLNLIGTFVRYAIKGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRSSLSLSLSLSLSLSSISNLFRTSFSSTIINMNHPF

Homology

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.0e-54
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKL+KR       +N+ VKK+V+VCPEPTCLHH+PCHALGD
Sbjct: 80  QGFQRDQNLQMHRRRHKVPWKLLKR------DNNIEVKKRVYVCPEPTCLHHNPCHALGD 139

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 140
           LVGIKKHFRRKHSN KQWVC++CSK YAV SD+KAHLKTCGTRGHSCDCGRVFSR
Sbjct: 140 LVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSR 188

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.6e-53
Identity = 92/115 (80.00%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKL+KR       +N  V+K+V+VCPEPTCLHH+PCHALGD
Sbjct: 77  QGFQRDQNLQMHRRRHKVPWKLLKR------ETNEEVRKRVYVCPEPTCLHHNPCHALGD 136

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 140
           LVGIKKHFRRKHSN KQW+C++CSK YAV SD+KAHLKTCGTRGHSCDCGRVFSR
Sbjct: 137 LVGIKKHFRRKHSNHKQWICERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSR 185

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.8e-51
Identity = 90/115 (78.26%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKL+KR + +       V+K+V+VCPEPTCLHH PCHALGD
Sbjct: 46  QGFQRDQNLQMHRRRHKVPWKLLKRDKKDEE-----VRKRVYVCPEPTCLHHDPCHALGD 105

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 140
           LVGIKKHFRRKHS  KQWVC++CSK YAV SD+KAHLKTCG+RGHSCDCGRVFSR
Sbjct: 106 LVGIKKHFRRKHSVHKQWVCERCSKGYAVQSDYKAHLKTCGSRGHSCDCGRVFSR 155

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot
Match: Q8H1F5 (Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39
Identity = 75/115 (65.22%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           KGFQRDQNLQ+H+R H +PWKL +R      S+  VV+KKV+VCPEP C+HHHP  ALGD
Sbjct: 99  KGFQRDQNLQLHKRGHNLPWKLKQR------SNKDVVRKKVYVCPEPGCVHHHPSRALGD 158

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 140
           L GIKKHF RKH  +K+W C+KCSK YAV SD+KAH KTCGT+ + CDCG +FSR
Sbjct: 159 LTGIKKHFFRKH-GEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCDCGTLFSR 206

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot
Match: B8BGV5 (Protein EARLY HEADING DATE 2 OS=Oryza sativa subsp. indica OX=39946 GN=Ehd2 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.1e-39
Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNV--VVKKKVFVCPEPTCLHHHPCHAL 84
           KGFQRDQNLQ+HRR H +PWKL  RA A S+ +      +K+V+VCPEPTC+HH P  AL
Sbjct: 113 KGFQRDQNLQLHRRGHNLPWKLRHRAAAVSAVTTAAPAPRKRVYVCPEPTCVHHDPARAL 172

Query: 85  GDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRSSL 144
           GDL GIKKHF RKH  +K+W C++C K YAVHSD+KAH+K CGTR + CDCG +FSR   
Sbjct: 173 GDLTGIKKHFSRKH-GEKRWRCERCGKRYAVHSDWKAHVKNCGTREYRCDCGILFSRKDS 232

Query: 145 SLS 146
            L+
Sbjct: 233 LLT 234

[Close]

BLAST of Cucsat.G15834.T2 vs. NCBI nr
Match: XP_004150157.2 (zinc finger protein SHOOT GRAVITROPISM 5 [Cucumis sativus] >KGN49735.1 hypothetical protein Csa_017785 [Cucumis sativus])

HSP 1 Score: 249 bits (636), Expect = 1.23e-78
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD
Sbjct: 69  QGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 128

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 129 LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 183

[Close]

BLAST of Cucsat.G15834.T2 vs. NCBI nr
Match: XP_008466889.1 (PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo])

HSP 1 Score: 249 bits (636), Expect = 1.23e-78
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD
Sbjct: 69  QGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 128

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 129 LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 183

[Close]

BLAST of Cucsat.G15834.T2 vs. NCBI nr
Match: KAA0067626.1 (protein SHOOT GRAVITROPISM 5 [Cucumis melo var. makuwa] >TYJ97138.1 protein SHOOT GRAVITROPISM 5 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (586), Expect = 4.47e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 35  MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR 94
           MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR
Sbjct: 1   MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR 60

Query: 95  KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 61  KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 105

[Close]

BLAST of Cucsat.G15834.T2 vs. NCBI nr
Match: XP_038875343.1 (protein indeterminate-domain 14-like [Benincasa hispida])

HSP 1 Score: 225 bits (573), Expect = 1.41e-68
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKL+KRAE    S    VKKKVFVCPEPTCLHH PCHALGD
Sbjct: 126 QGFQRDQNLQMHRRRHKVPWKLLKRAETTGES----VKKKVFVCPEPTCLHHDPCHALGD 185

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 186 LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 236

[Close]

BLAST of Cucsat.G15834.T2 vs. NCBI nr
Match: PPD94647.1 (hypothetical protein GOBAR_DD08325 [Gossypium barbadense])

HSP 1 Score: 219 bits (558), Expect = 1.67e-67
Identity = 103/139 (74.10%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MRKWFLYHPRRYLNLIGTFVRYAIKGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVV 60
           M++WFLY  +  L           +GFQRDQNLQMHRRRHKVPWKL+KR   E       
Sbjct: 18  MQRWFLYLRKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESQE------- 77

Query: 61  VKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAH 120
           VKK+VFVCPEPTCLHH PCHALGDLVGIKKHFRRKHSNQKQWVC+KCSK YAV SD+KAH
Sbjct: 78  VKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCEKCSKGYAVQSDYKAH 137

Query: 121 LKTCGTRGHSCDCGRVFSR 139
           LKTCGTRGHSCDCGRVFSR
Sbjct: 138 LKTCGTRGHSCDCGRVFSR 149

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL
Match: A0A0A0KJ22 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 5.97e-79
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD
Sbjct: 69  QGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 128

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 129 LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 183

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL
Match: A0A1S3CS86 (protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1)

HSP 1 Score: 249 bits (636), Expect = 5.97e-79
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD
Sbjct: 69  QGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 128

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 129 LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 183

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL
Match: A0A5D3BG30 (Protein SHOOT GRAVITROPISM 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00090 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 2.17e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 35  MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR 94
           MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR
Sbjct: 1   MHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRR 60

Query: 95  KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 61  KHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 105

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL
Match: A0A2P5X3Q9 (C2H2-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22719 PE=4 SV=1)

HSP 1 Score: 219 bits (558), Expect = 1.13e-67
Identity = 103/139 (74.10%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MRKWFLYHPRRYLNLIGTFVRYAIKGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVV 60
           M++WFLY  +  L           +GFQRDQNLQMHRRRHKVPWKL+KR   E       
Sbjct: 18  MQRWFLYLRKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRESQE------- 77

Query: 61  VKKKVFVCPEPTCLHHHPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAH 120
           VKK+VFVCPEPTCLHH PCHALGDLVGIKKHFRRKHSNQKQWVC+KCSK YAV SD+KAH
Sbjct: 78  VKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCEKCSKGYAVQSDYKAH 137

Query: 121 LKTCGTRGHSCDCGRVFSR 139
           LKTCGTRGHSCDCGRVFSR
Sbjct: 138 LKTCGTRGHSCDCGRVFSR 149

[Close]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL
Match: A0A6J1CZE4 (protein SHOOT GRAVITROPISM 5-like OS=Momordica charantia OX=3673 GN=LOC111015595 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 2.24e-67
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 25  KGFQRDQNLQMHRRRHKVPWKLVKRAEAESSSSNVVVKKKVFVCPEPTCLHHHPCHALGD 84
           +GFQR+QNLQMHRRRHKVPWKL+KR  AE++ +    +KKVFVCPEP+CLHH PCHALGD
Sbjct: 66  QGFQREQNLQMHRRRHKVPWKLLKRPAAEAAEA---ARKKVFVCPEPSCLHHDPCHALGD 125

Query: 85  LVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 139
           LVGIKKHFRRKHSNQKQWVC KCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR
Sbjct: 126 LVGIKKHFRRKHSNQKQWVCHKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSR 177

The following BLAST results are available for this feature:

BLAST of Cucsat.G15834.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IPE3	6.0e-54	81.74	Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5...	[more]
Q9C9X7	6.6e-53	80.00	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]
Q9FRH4	4.8e-51	78.26	Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV...	[more]
Q8H1F5	1.4e-39	65.22	Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1	[more]
B8BGV5	7.1e-39	60.98	Protein EARLY HEADING DATE 2 OS=Oryza sativa subsp. indica OX=39946 GN=Ehd2 PE=3...	[more]

BLAST of Cucsat.G15834.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150157.2	1.23e-78	99.13	zinc finger protein SHOOT GRAVITROPISM 5 [Cucumis sativus] >KGN49735.1 hypotheti...	[more]
XP_008466889.1	1.23e-78	99.13	PREDICTED: protein SHOOT GRAVITROPISM 5 [Cucumis melo]	[more]
KAA0067626.1	4.47e-72	100.00	protein SHOOT GRAVITROPISM 5 [Cucumis melo var. makuwa] >TYJ97138.1 protein SHOO...	[more]
XP_038875343.1	1.41e-68	90.43	protein indeterminate-domain 14-like [Benincasa hispida]	[more]
PPD94647.1	1.67e-67	74.10	hypothetical protein GOBAR_DD08325 [Gossypium barbadense]	[more]

BLAST of Cucsat.G15834.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ22	5.97e-79	99.13	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G092930 P...	[more]
A0A1S3CS86	5.97e-79	99.13	protein SHOOT GRAVITROPISM 5 OS=Cucumis melo OX=3656 GN=LOC103504214 PE=4 SV=1	[more]
A0A5D3BG30	2.17e-72	100.00	Protein SHOOT GRAVITROPISM 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2P5X3Q9	1.13e-67	74.10	C2H2-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA2...	[more]
A0A6J1CZE4	2.24e-67	85.22	protein SHOOT GRAVITROPISM 5-like OS=Momordica charantia OX=3673 GN=LOC111015595...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10593:SF154	OS08G0467100 PROTEIN	coord: 25..139
None	No IPR available	PANTHER	PTHR10593	SERINE/THREONINE-PROTEIN KINASE RIO	coord: 25..139
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 92..123

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G15834	Cucsat.G15834	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15834.T2.E1	Cucsat.G15834.T2.E1	exon
Cucsat.G15834.T2.E2	Cucsat.G15834.T2.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15834.T2.C1	Cucsat.G15834.T2.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15834.T2	Cucsat.G15834.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity