Cucsat.G15514.T34 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G15514.T34
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	ctg2009: 77256 .. 87621 (+)
RNA-Seq Expression	Cucsat.G15514.T34
Synteny	Cucsat.G15514.T34

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAAAGTTGTAGGCGTTGCAGGTTTGTGAATTCCGGTATATATAAATAGGGTTTAAAGAAAAGGAGAGAAAAAAGATTAAACTCACACTTCTTCCTCCACTCTCTTCCCTCCTCAGTTACGCCAGCTGCCGGCCACAACCAGCAAGTCGCTACCTTCCTTCTTTCGTGCCGGAGTTGCTCGTCGCTGCCGTCGGAATTTCCCGTTCACCTGTCGGTTACCGCCGTATCTCACCGAAAATTTAGTTTGGGTAAGATTTTCGTGCTTTTCTACAATTTTAGTTGAATACCTTGAATGCCCATTAACTTTTGGGTTTGGTTGGTTAACATCCGAAACTGGGTTTGGTTGGTTAACATCCGTTTGGTTAGATATTGTATTAAATTTGTCTTCATCCATTTTTTGGGTACATTGGTGATTTGAGAGGTTTGAGACCAGTTTCGGCGGGAATTTCGGCAAGTATTTCAACTTTAGAGTTGTTTGTTGTTTGGGATGTTACCAATTAAGATTACAAGTGATGTTATTTGCATTTACCTATATGTCTATGACGTGGACCAGCTAGTATTAACTTGAATGTTAAGTAAGTAGGTGACGATTTGCCCTCCTAACATTGTTATGTTTTCGGGTGCCACTGGGTTCCCTGCTATGTTATTAGGTGCCACCAGGTACATGTCGGGCTTCCTGGACAGTTGTTTTCAAGTACCTCAGAATTCTATTAACAGTCGCCATGTGTTCCTCATAGGGGACTTGCATGAACTGGCTAACTATACTCACAACATAGGATATATCTGATCTAGTGCGAAACAAATAAATCAACTCTTCCACAAGGTTCTGATATTTTTTTGTCAATTGGAACTTTATCACTTGAATTTCTCAGTTTACAGTTGAACTCAATAGGGGTATGAGCAGGACTACATCCTAGCATGCATGTTTCAATCAACAAATCAACTGTATACTTTCTTTGAGATGCAACGATACCATCTTTTGATCTAGCTACCTCCATCCTAAGGAAATACTTTAGATTTTCCAAGTCTTTAATTTCAAACTCATTACCCATCTTCTTTTTTAGTTGGATGATCTCAACAGCGTCATCCCCAGATAATACAATGTCATCAACATAGACAATCAACACGGGCGATCTTCCCAGCCTTGGAGACTTTCGTAAACAAAGTGTGATCAAAGTGCTCATGATTGTACCCTTGAGACTTGAAAAAGGAAGTAAACCTATCAAACCATGCTCCTGGTGACTGTTTTAAACCATACAAGGATTTTTGAAATTTGCAAACCTAATGATCAAACTAGGCTTCAAATCCTGGAGGGGGGCTCATATAGATTTCGTCTACTAAGTCTCCATTCAAGTTGATATAGGGACCAGTCTTTATTCTCATCAACTGATAATAGGACTCCAACGGTGTTTAGTTTTGCAACTGAGGAAAAAGTTTAAGAGTAATCAACTCCATACGTCTGAATAAACCCTTTTGCAACTAATTTGGTTTTGTATCTGTCAAGAGTTCCATCTGTCTTGTACTTGAGTGTAAACACCCATTTACATCCCACGGTTTTATGCCCCTTAGGGAGATTATAGATCTCGTAGCTCTTGTGCTTTTCAAGAGCTCTCATCTCTTCCATAATTGCAGTTTTCCACTCAAGGAACTCTAAAGCAAGTGGATATTTTTAGGTATCATGGTAGAGTCAAGGCTGGCTATAAAGGCTCTGAACTATGGTGATAAGATCTGATAGGAAACATAGTTATAGATAAAGTGTTTCGTGCAAGACCTGATACCTTTTCTTAGCACAATAAGGATTTCAAGAGAAGAATCATTCTCATCTAAATTACCTCAATGATTCGGTTTAGCCTCATCACCTGTCGTTTTTGCCATGACCTCAATCTCATCAACGTTTTCAACACTGCCTTTTTGTCCCATTTTTTGAAGAACAATTGTATTAGACTTGCCATTCTCAGCCATTCCAGAAGGTGATGGTTCTTTCTCTCGACAACCCGATTTTGCTGGGGTGTGTAAGCATAGGAGCTTTGATGAACAATCCCTTTGGATGGCAGAGACTCAAAGGAATAGTTTTGAAATTCATGACCATTGTCACTTTGTAGAATTGCAATTTTTGCATTGAACTGCGGTTCGACGGTGTGAAAGAAGTCCTAAAAAGTGGAGGTGACCTCAGATATGTCAAAGATGAGAAAGATCCAGGTAAGATGGGTATGGTCATCAATGAATGTCACAAACCACCCTTTTCCAGAGGCAGTAGTAACCTTGGATGTTCCCCATACATCGCTATGGATAGGAATGAAAGGTTAGGTTGGTTTGTATGGTTGGGAGGGAAAGGAGGCCCGATGCTGTTTTGGATGAATACACACATCAAGATAAGGTAGAGACATCAACATTAGAGAAGAGATGAGATGAGGAAATAAATGTTTCATATATTGAAAATTGGGATGGCCCATACGAAAATGGCAAAACATACAGTCCTTTTCAGAAGTAGTAAAGTCCACAGATAAAAGAGGAAGAAGATTAAAGAGAGAAATATGAAGATCAATGAAGAATCTCTTTGTTAAATTGTTGAAGATATTCAAGTGGGCTATATTTTGCAAGACTGTGTGAGGACTCTACGGTTGTTATTTATTTGCTATTATTATTTTTGTCCCTTTAGTTTTGAATTGGGGCAATGAGCTTTTTAAACATACTGCTTATTTTTGGATTAGGAAATATTAGATGAGTTCCTTATCTTTTTTCTTATAAAAAGGTCAACCTAAAAACAAATATGCCAAATTGTGTGTCACATACGCATCTATTCTTTGTCTCACATAAAGTACTTGTGGTTTGTTTTAAATGATTGAACTCGGAGGGTTCTAGTCACTTCGCAATTAAACATTTCTAAAATTTTCCAGCTTTTGGTCTATGATTTCTAGGGGTACCCCGAACTCAGGTTTTATGTTATTTGAAATTATATTTAGTTGAAATTCTTTACTTTATGAGTGGTTTGATTCTTTCGTTTTGGTTGTAAAAGTTTACTTTCAAATTTATGCATGCATAAGGTAGTGAGTATTGACCCTGTTAGTAGTCTTAAAGAGTTGGGTTGTTACATTTTGAGACACTGAAACCTTGGTGACATTGACGGTGACGGCGAGTACCAACGACGGCAGTGACTGCGTTCATCACATAGCCGTTCCTGTAATATTCCTATTTTGTGTAGGCTTTATCAGAAACTTTCTTTTGTTGTTTTGTACTTTTTCTTGAGGAAAGAAATTGCTTATTTTTTTACATCAACGTTGAACAAAGTGTTTGTTGTTCGTAGTTCTAAGATATTTGGTTGATACTTTGTTTATGACCTTCCTCACGTGGGTTTGCAAGTGCGAGACATGGCAAGAGATTTCAGAAGTTTCTAAGGGTCTTTTTTCTTACTGTACTTTTGTTATTGATATTCTGGAATAATTAACTATAAATTGTTGGTTGGTACTTAAGGATGTCATAGACGGACAACAATCTTAAAGAAGAAAATATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTGTATGCTTTTCTTTTTTAATCCTCGCTTCAGAAATTATCAGCTTCTTCTTCATCTTCTACGTATTATCGTTGTTGATCAGTATTGTTTGTGCATTGACAGAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTAGAGAGTTCTGGGTCTTTGTATTTTTTGGTAAAGTTAATTGATGCTTCGTTAATTATTGGCAAAAGAACACTCACGAGCTAACAGAGCAACCCTTTTATCTTAAATTGTATCTGGACTTCAGAATTGAGTTCCACATAACTGGGATTATAAACAGTGTTTTGGTAGGATTTATTTATGCTCAGTGACACTGTCTAAAGTCCATTCGTCTTTTAAACTTATTAGCTTTGATAGGAAGCTATTATATGGAATCACATTGGATATTATTGGATAAATGGGATTTTGAAGAGGTAGTTGTATTCTCAGAAAGCACACCACTTGTGTACAAATTGTGCTTCTTATCACTGTTTCTGTAATTGTTTGTATAGGTGAGTTTGGAGATGCATCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATGTTAGTTCATTTACTCACAATGAAAAAATATGTTTTATTGAGAAATTTCCAGATTCAAGTTAAGTTATTTTCTCAACTTACGTTTCTGATTTTGTAGTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGCAAGTTTGTTACCTGGTATTTTTATTTGCATGTTATTGTTCTCTTCTATCTGCTTTATCGCTTACTATGATATGTTCTCTCAGTGTCTACAAATCAGATATTGATTTCAATTTTTAAATGGAACGTTATGATTCATTATAGGGAGATGGACAGATCCCATAGATAATTTTCTTTACAATTCTTATTAGTCCTAATATTAGATTTTATTGTTTGAGCAAGAAGCTCATATCTTTGAACAAGTGGAATTACTATGGAGGGGGAAGAATGTCAATGCTGTTCTCTAACTACTCTGTTTCTCTGATTCTAGCCAATTGCCAATGTTTATCCCCCCTTGACTTTGTTGGGGTTTCATTTATCAATTATATTTCTTTTTGTTTAAACTTGTTTTTCTTTCATTTTCATCTTGTTTAGAAAAGTAAAATTGGTTTTTATTTCCTAAAGGCTAAAACCATGATACATTTGGCCGAACTTACTGAACAAGCACATTAAAGAAGAAATTAACATAATCCAGAAGGTGGTTCTTGCACTGAGAAAGTATTTGTAACACTTATTTGCTTTCAATACATCAACTATTACAAATGTTTCGTTACTGAAGTATTGTTTCTGCATTTTAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAACTGTCGGTCTGAAACTTTTTGTGCAATATGGTGTCAACTATTACCTTTGTGTTATTAAGTGGATTTGTTACAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGGTATGCATGAGAATGTTATATGATACCAAATTACTTGGTCAAAACATGTTTAGTCTTGCTCATAATTTTTCTGTAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGTTAGTACTATTTTATATTTTATCTTAGGAATTTTTGTACCTTTTAGTTAGGTGATATGACATTCACTGTTACAAGGAATGTCACGCCTCTTTAGTTTCATTCACATTAAGGATGGTTGATGGGAAAGAAAAACGGACATGACAAAAATGAGCAATTTACTCACTTGAAGCCTATTGATGGAAGACTTCAGTGTGCAACTTTTTCAGAGACATTGGTATTATTATTATTATTATTATTTTATATAATATGTAGAACAAATATAGAAGCAGAACCTAAAACCCTTGTGGGTGACCTATTGGACCCTGAGCCTGTGAGGAGGAATTGAACAAAAGACCCCAATCTAAAAACAATGGGGAGAGAATGAATATTACTATATGAATTGTGTAAACTGTAGAACTCGATTTATTGGAGGTTGAATACTGACTTTGGACACAAGATGGGCTTGCTAATGTTATACAAGAACGTGAAATAACTAGCTTCTTTGAGTGTTCTAATTGGTCACCCATGTTGCCCTTCACATTTTTGTTTATTTTCCTTCTTTTGATCGATTCCTTTTTCATTGTGATAATTTTGGAAATGTACTTGTTATCTACATTCCAGTAGTAATTGGATCAATATCTTTGTATGGCTCTAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGCTTCTGTAGATTCCTCATACAGTTTAGTTATGCAAGTGTTTGATCTTGATGCACATTCATTGTATTACACAAATCATTTATTTTTTCCTTCCTTTCCTGTTGGGTCTGGAATTTAAGAAATTGTTTGGAGATTCTTTTGAAGACCACTTGCTACTTTTAAAAATAAAATATTAGTGAAAACATGCTGGCTTGATTGCTTTATACAAGTATTTATATATATATTTATAAATATATAGACGAATTTATGCAAGTTGTTTTCTAATGTTTTCTTTTGGTTTGTTTTTAAAGGTGAGTTGGTTGATTCTTTGAATAATTGAAATTGTTTTTTTTCTAAAACGATTGGATGCATGGTTAATACATTTTGTAAAGACTAAATCATGAAAGGTAGGGCTCAAGAAATATAATAGAACGACTTGTGATTTGGAAACCATTAGAAATGTTTTTCCTTTATCACCGATTCACCTGTGTGCCCTTTCTGTGTCCTGTTTTAAAGTTTCAATGGTTTGCAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATAGATGATTATAAAATCAGTATGTTCACCACTGTCGATTTCTCAATGTGTTTACATTTTACACTTCTGAGTGAGTTTAAGCTTTTCTAAAAACATGTGATTGCACAGATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTCTCTCCCTCACTCTCATACATCTAGTGAAAAGTACACATATGTTCTCTTGAGTCTTGAGAAATGATTCTATTTCTTCTTGCAATCAGTAGATTGAAATCTCTGATGTGAGTTAGTACTTAATTTCTTTAAATAACAACTTTGATTGAGTAAAAATGAAAGAATACATAGAAATCACTCATCGGAAAAACCAAGCCCACTAAAATGGGAACCATTTATAAGTAGGGCTCTGGCTTTCAAAATAGATCCTATAGAATAATTCACAAAAGGTCATTGAGGGAAACATTTCTTCTCCGATCCCTTGCACTTTCAGAGATTGATTAATCTATAGCCAACAAACTTGGATTCTCTTCGTTACAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAAGAGTTTTCTGCCGGTTACACTCAAGATTGTCCGATGAGTGTAATGTATACATTTTATCTTGAAATATATATAATTTACATGTGAATTCAACTAAAAAACCAATAATATAATGGGTTACCCTTCTGCCCTTACAAATCGTTGTCAAGATTACTAGGAATTGCTCTTTTTTTACTCAGTATTTTGAAATTGGCCATTTGTGATTTTGTTTTTTTGGTTAATTATTTGACAGATATTCCATTTCTTTTCCTGTAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGGTAAACATCTTTGCTCTGTAAGCACGTGTTTTTTGCATCCAAATTCACATATTTACAAATCATGAAGTAAAAGATAATACCATACCCTTTTTTCCAATGAGAAAGCACGGAACTGTCATTGATAGAATAAAAAAAACATAAAGGAGTGAGTGACCATGGAGGAAGCAAAAATATCATACTAGATTACTTGTTCAATTCTTCATGGCATCAGACTTATTGGTTTCCAGTACATTAATTAAATACTCAAGATAATTGTGTGTAATCAGACATGGATGTAACCAGAAAAATAATTACAGGAATAGTTAATATTTAATCAGGTAACATATGTTTTATTATTAGGATTGGTTGTAGTTTTATTAGCAGTTCTGCACATCTTTGATTTAAATGTCCTTATATCTTGTCTTTGTTTCTTCATTTCTTCCTTTCTGTGTATCGTCTTCTACCTGCACCGGCTACCCATGTTCTTTTGCAGCTTGAGTGAGTTACCTTGTTAGTCGTTTTTGGGGCATCATAGTGAAACAATTTATCTTTGTTGCAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGGTTAATGTGAAAATTTACTTATTTCGTATGTGCAATTGGTGGTATTTGTTTCCAGGGTTGGGATTAGATGGGTTAGACATCCTAAGTCCAATCCCTTGTCTGGGACAAGCGTATAGGAGTCCAGCTTCCTACCCTCTTTCGAATGAGTTTGAATAGTTAACTTTATTCAAACTCATGAGTTACCTTTTTTTCTTTTCTAATTTAATCTAGAAGGTTTATTGGTCAATTTCCAAAGACAACCTTGGCAAACTAACCTCTGGCTACCAACTAATGTTGAAAAACATTAACAAAAGCACTTTGAATAAAAATATAAATATCACAAATATCACATATCAACCTAACTGCCTGCCGGTCTTAACATTGCCAGATTTGAGATTTCAAGGCTAGGCACCAAACACCCCCTTGGTTAAGACTTAACAGTGATATTGACCACAAGTATGTTTTTCACTAATCTGGTTACTTTAGCCTTTGTCATCTTATTCGTGTGGTGTCCCATAGCAGAACATTTTAGGATATGCCAAATGTGGATTTTGCCAACTTTTATCAGTAATGGCTAGAAAACCACCTTTGTGGTTGCATGACAGGATACTTGTATGTGAACTGAAGTTGAAACCTGTTTTGGGGGTGTAATCGGTTCAGTTACGCTTGGTTTTAACCTCAAACCGAACTGTCATAACTTATGAAAATAAGAAAACTGCACGAAACTGCTGAAGGGATATTAACTGAAGTGCACATAGCCAATATAAACTGGTTTACTCGGCTCTGTTTCCTGTTAACATTATTAATGTTCGGTTTTGGTCTCGACCATGGAGCCGAATTCATTATTATTGGATCGAGGACTAAAGCGTGTCAGGAAATTTGTGTTAACTGTGTGTCAACATTCAAAATAAAATATTTGTGTTCGCCTAGGCTCAAACACGTGCATTAGACTATTCAGTCCAATGAAACTGCCACTGGAGTGGAGCCATCCGCTGTCTTCATATAAATATAGTTTTGCGGTCGGCTTGGTTATATTATAACTGCTGAATGCTAAACCCATCTCCAAACCTGTTTTGCCCTCGCACCCCTACCGTTTTATATAATCACCCCTTTAAGCGTATTCTCTATGTCGTTTGTCTTAGTTTGATTAATTTTCGCTTTTGCTCTGTTCCCTTACAAAACTAGTACTTTCATTATCATTTACTTTAATAATAGTTTTGGAGTGAAGATCTGATTCTGGTGACTATTCCTTTCATGCTTTCTCAGTGGACAAGTTCAAATACTGACTTCTTGCTTTTGTCATCTATTTTCCAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTGAATTTGAAAATTCAGATCAGTAGCTCATTGAGGAGTGTATTATATGGAGGAAACTTCTTTCAAACTTGAGAACAAAAATTGTGTTTTCTTCTTTCTATTGGAATACATGAATTTCACTGTCCTTATAAATATTATTTTTTTAATAATATATATATATATATATTTTAGTTACCACATCATTGAGAGACTTGTCAATCACAATAGAGCTAAGGTTTTAGTTTTAGGGGTTTACATGGAGGTATTTTTTCCCTCATAAATGGTT

Coding sequence (CDS)

ATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATAGATGATTATAAAATCAATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTGA

Protein sequence

MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF

Homology

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BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-15
Identity = 97/381 (25.46%), Postives = 170/381 (44.62%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEP 82
           ++E LL NG+L+M  +V    +R   +   G       V ++  +L + HFV+RCP+   
Sbjct: 106 IVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPT 165

Query: 83  TLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDT--NPEAEKSEH 142
           T +     PPP    A    I+E    L  +L    +  +  R S  D    P+A++ ++
Sbjct: 166 TENSDPGPPPP----APTLVINEKDMYLVPKLSLIGKG-KRRRSSDEDAAGEPKAKRPKY 225

Query: 143 HSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFD---DGV 202
            +         D+ E   D G     I W+AN D F +  R +A +  V ++ D     +
Sbjct: 226 TT---------DNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEI 285

Query: 203 VNVLSAILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEAS 262
           V  +  + E T SS        T PLS + I+        + K  + + +TL  D     
Sbjct: 286 VRTMLRMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 345

Query: 263 LAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 322
           +   G  G   Y INL + +    T  +ES+V +R+G    R+FR + +    +E +++ 
Sbjct: 346 VGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVE 405

Query: 323 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMY 382
           D + +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y
Sbjct: 406 DFAMIPAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCY 461

Query: 383 HASLNLQLRLAHEIEENKELL 384
            +  NL  R   E +ENK LL
Sbjct: 466 KSIANLIERRQFETKENKRLL 461

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.6e-15
Identity = 96/378 (25.40%), Postives = 166/378 (43.92%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEP 82
           ++E LL NG+++M  +V    +R   +   G       V ++  +L++ HFV+RCP    
Sbjct: 106 IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPA 165

Query: 83  TLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHS 142
           T +     PPP    A    +SE    L  +L    +  +  R S  D   E +      
Sbjct: 166 TENSDTGPPPP----APTLVVSEKDMYLVPKLSLIGKG-KRRRSSDEDATGEPKAKR--- 225

Query: 143 QISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLS 202
                K+  D+ E   D G     I W+AN D F +  R +A +  V ++ D     ++ 
Sbjct: 226 ----PKQTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVR 285

Query: 203 AILEATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAA 262
            +L   R SE    +    T PLS + I+        + K  + + +TL  D     +  
Sbjct: 286 TML---RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGK 345

Query: 263 LGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSS 322
            G  G   Y INL + +    T  +ES+V +R+G    R+FR + +   L E +++ D +
Sbjct: 346 SGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFA 405

Query: 323 FVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHAS 382
            +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y + 
Sbjct: 406 MIPAKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSV 461

Query: 383 LNLQLRLAHEIEENKELL 384
            NL  R   E +ENK LL
Sbjct: 466 ANLIERRQFETKENKRLL 461

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.7e-14
Identity = 92/378 (24.34%), Postives = 163/378 (43.12%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEP 82
           ++E LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    
Sbjct: 106 IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPD 165

Query: 83  TLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHS 142
           T S     PPP    A    I+E    L  +L    +         G     +++     
Sbjct: 166 TDSSDPGPPPP----APNLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGE 225

Query: 143 QISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLS 202
             + + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D     ++ 
Sbjct: 226 PKAKKPRCTDNEEPTPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVR 285

Query: 203 AILEATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAA 262
            +L   R SE    +    T PLS + I+        + K  + + +TL  D     +  
Sbjct: 286 TML---RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGK 345

Query: 263 LGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSS 322
            G  G   Y INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D +
Sbjct: 346 AGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFA 405

Query: 323 FVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHAS 382
            +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y + 
Sbjct: 406 MIPAKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSI 460

Query: 383 LNLQLRLAHEIEENKELL 384
            NL  R   E +ENK LL
Sbjct: 466 ANLIERRQFETKENKRLL 460

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-14
Identity = 88/376 (23.40%), Postives = 162/376 (43.09%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEP 82
           ++E LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    
Sbjct: 106 IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPD 165

Query: 83  TLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHS 142
           T S     PPP    A    I+E    L  +L    +         G     +++     
Sbjct: 166 TDSSDRGPPPP----APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDATGE 225

Query: 143 QISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLS 202
             + + R  D+ E + D G     I W+ N D F +  R +A +  V ++ D     ++ 
Sbjct: 226 PKAKKPRYTDNKEPSPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVR 285

Query: 203 AILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALG 262
            +L  +  +        T PLS + I+        + K  + + +TL  D     +   G
Sbjct: 286 TMLRMSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSG 345

Query: 263 CPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFV 322
             G   + INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D + +
Sbjct: 346 DSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMI 405

Query: 323 DKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLN 382
              EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  N
Sbjct: 406 PAKEAKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIAN 460

Query: 383 LQLRLAHEIEENKELL 384
           L  R   E +ENK LL
Sbjct: 466 LIERRQFETKENKRLL 460

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot
Match: Q7ZUX1 (DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio OX=7955 GN=polr3c PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-11
Identity = 88/405 (21.73%), Postives = 165/405 (40.74%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLV----ERAESSGRAGNHPISDV 60
           +R+ +++  A    G     + ++E +LQ G+++M   V    +R   +   G     + 
Sbjct: 89  LRYPRYIYTAKSLYGD--TGELIVEEILQRGQMTMSSTVKTVADRLTHNMPEGQSMDYNE 148

Query: 61  VHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARP 120
           V  +  +L+  HF++RC             PP     +     +E P  + Q     + P
Sbjct: 149 VVSAFSRLVETHFLQRC-------------PPMASAESSGTGSAETPPAVTQPSNPESHP 208

Query: 121 ----VEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEF 180
               +  +  S       + +     Q + +K K D  E        D  I W+ N++ F
Sbjct: 209 DCYKLPYISLSGHGKRRRSSEDGEADQRAAKKAKTDSSEC------GDEGIHWQVNFERF 268

Query: 181 IRCLRHKACIEHVRSQFDD---GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVM 240
               R +A I  V  + D     +V  +  + E T S+        T  LS + I+  + 
Sbjct: 269 HLHFRDQAIISAVSCKLDQTSGEIVRTMLRMSEVTTSA----NAAFTQALSANEIFRALP 328

Query: 241 KN-EVGR-------SMTLDRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRY 300
            N  + R       ++ +D     +   G  G   + +NL R +       +ES+V +R+
Sbjct: 329 SNYNIARPILDQYLTLLVDDPMEFVGKAGDSGGGMFVVNLHRALANLARATLESVVQERF 388

Query: 301 GRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS 360
           G  + R+FR L +   L E +++ D + +   EA ++LY L  +  + ++++  T P H+
Sbjct: 389 GSRSARIFRLLLRKRHL-EQKQVEDFAMIPAKEAKEMLYTLLSENLVQLQEIPKT-PDHA 448

Query: 361 ---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 384
                 L+ V++      +L   Y    NL  R  +E +ENK LL
Sbjct: 449 PSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENKRLL 466

[Close]

BLAST of Cucsat.G15514.T34 vs. NCBI nr
Match: XP_011651155.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis sativus])

HSP 1 Score: 838 bits (2166), Expect = 1.65e-306
Identity = 424/425 (99.76%), Postives = 425/425 (100.00%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS
Sbjct: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 120
           LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL
Sbjct: 61  LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 120

Query: 121 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 180
           RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA
Sbjct: 121 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 180

Query: 181 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 240
           CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD
Sbjct: 181 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 240

Query: 241 RVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 300
           RVEASLAALGCPG+DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE
Sbjct: 241 RVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 300

Query: 301 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 360
           TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE
Sbjct: 301 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 360

Query: 361 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 420
           MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM
Sbjct: 361 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 420

Query: 421 LFHDF 425
           LFHDF
Sbjct: 421 LFHDF 425

[Close]

BLAST of Cucsat.G15514.T34 vs. NCBI nr
Match: XP_011651154.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_031739155.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >KGN57381.1 hypothetical protein Csa_009994 [Cucumis sativus])

HSP 1 Score: 838 bits (2166), Expect = 6.16e-305
Identity = 424/425 (99.76%), Postives = 425/425 (100.00%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS
Sbjct: 97  MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 156

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 120
           LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 216

Query: 121 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 180
           RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA
Sbjct: 217 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 276

Query: 181 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 240
           CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD
Sbjct: 277 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 336

Query: 241 RVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 300
           RVEASLAALGCPG+DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE
Sbjct: 337 RVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 396

Query: 301 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 360
           TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE
Sbjct: 397 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 456

Query: 361 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 420
           MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM
Sbjct: 457 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 516

Query: 421 LFHDF 425
           LFHDF
Sbjct: 517 LFHDF 521

[Close]

BLAST of Cucsat.G15514.T34 vs. NCBI nr
Match: XP_008439235.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo] >XP_016899098.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo])

HSP 1 Score: 810 bits (2091), Expect = 4.61e-295
Identity = 410/426 (96.24%), Postives = 418/426 (98.12%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 1   MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 60

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 61  LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 120

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 121 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 180

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 181 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 241 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 360

Query: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDAL 420
           EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDAL
Sbjct: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 420

Query: 421 MLFHDF 425
           MLFHDF
Sbjct: 421 MLFHDF 426

[Close]

BLAST of Cucsat.G15514.T34 vs. NCBI nr
Match: XP_008439232.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo] >XP_008439233.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 810 bits (2091), Expect = 1.70e-293
Identity = 410/426 (96.24%), Postives = 418/426 (98.12%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 97  MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 156

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 216

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 217 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 276

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 277 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 337 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDAL 420
           EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDAL
Sbjct: 457 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 516

Query: 421 MLFHDF 425
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Cucsat.G15514.T34 vs. NCBI nr
Match: XP_038878063.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Benincasa hispida] >XP_038878064.1 DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Benincasa hispida])

HSP 1 Score: 748 bits (1932), Expect = 7.78e-271
Identity = 376/426 (88.26%), Postives = 406/426 (95.31%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIAS+KL +DK+C+ELLEGLLQNGRLSMEQ+VERA+SS  AGN PI D+VHDS
Sbjct: 1   MRFSKFLAIASEKLRKDKDCEELLEGLLQNGRLSMEQMVERAQSSKHAGNRPIPDIVHDS 60

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEP+LSPKVEE PPP+KRGAKAAKISEVPETLEQR++E+ARP+EV
Sbjct: 61  LFKLLNAHFVERCPAPEPSLSPKVEEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEV 120

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTN EAEKSEH+SQISGQKRKHDDLE+ QDSGDAD  ILWRAN+DEFIRCLRHK
Sbjct: 121 LRFSMGDTNTEAEKSEHYSQISGQKRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHK 180

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASL++LGCPG+DDY+INLR+IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 241 DRVEASLSSLGCPGMDDYQINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360

Query: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDAL 420
           EMYHASLNLQLR A+E+EENKELLSLP DN N+PL+K+    + VR LL+SSL+KLDDAL
Sbjct: 361 EMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDAL 420

Query: 421 MLFHDF 425
           MLFHDF
Sbjct: 421 MLFHDF 426

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 838 bits (2166), Expect = 2.98e-305
Identity = 424/425 (99.76%), Postives = 425/425 (100.00%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS
Sbjct: 97  MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 156

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 120
           LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 216

Query: 121 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 180
           RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA
Sbjct: 217 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 276

Query: 181 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 240
           CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD
Sbjct: 277 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 336

Query: 241 RVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 300
           RVEASLAALGCPG+DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE
Sbjct: 337 RVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 396

Query: 301 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 360
           TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE
Sbjct: 397 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 456

Query: 361 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 420
           MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM
Sbjct: 457 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 516

Query: 421 LFHDF 425
           LFHDF
Sbjct: 517 LFHDF 521

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL
Match: A0A1S4DT15 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 810 bits (2091), Expect = 2.23e-295
Identity = 410/426 (96.24%), Postives = 418/426 (98.12%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 1   MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 60

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 61  LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 120

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 121 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 180

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 181 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 241 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 360

Query: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDAL 420
           EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDAL
Sbjct: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 420

Query: 421 MLFHDF 425
           MLFHDF
Sbjct: 421 MLFHDF 426

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 810 bits (2091), Expect = 8.21e-294
Identity = 410/426 (96.24%), Postives = 418/426 (98.12%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 97  MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 156

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 216

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 217 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 276

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 277 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 337 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDAL 420
           EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDAL
Sbjct: 457 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 516

Query: 421 MLFHDF 425
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL
Match: A0A5D3DHJ0 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00630 PE=3 SV=1)

HSP 1 Score: 728 bits (1878), Expect = 1.59e-261
Identity = 367/383 (95.82%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 97  MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 156

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 216

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 217 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 276

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 277 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 337 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLNLQLRLAHEIEENKEL 382
           EMYHASLNLQLRLAHEIEENKE+
Sbjct: 457 EMYHASLNLQLRLAHEIEENKEV 479

[Close]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL
Match: A0A5A7SSU3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001250 PE=3 SV=1)

HSP 1 Score: 728 bits (1878), Expect = 4.42e-261
Identity = 367/383 (95.82%), Postives = 376/383 (98.17%), Query Frame = 0


Query: 1   MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 60
           MRFSKF+AIASQKLGQDKNCQELLEGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDS
Sbjct: 125 MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 184

Query: 61  LFKLLNAHFVERCPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEV 120
           LFKLLNAHFVERCPAPEPTLSPKVEE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEV
Sbjct: 185 LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 244

Query: 121 LRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHK 180
           LRFSMGDTNPEAEKSEH+SQISGQKRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHK
Sbjct: 245 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 304

Query: 181 ACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 240
           AC+EHVRSQFDDGVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL
Sbjct: 305 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 364

Query: 241 DRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 300
           DRVEASLAALGCPG+DDYKINLRRI+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV
Sbjct: 365 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 424

Query: 301 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLD 360
           ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLD
Sbjct: 425 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 484

Query: 361 EMYHASLNLQLRLAHEIEENKEL 382
           EMYHASLNLQLRLAHEIEENKE+
Sbjct: 485 EMYHASLNLQLRLAHEIEENKEV 507

The following BLAST results are available for this feature:

BLAST of Cucsat.G15514.T34 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUI4	3.5e-15	25.46	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q2TBL4	4.6e-15	25.40	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q5XIL3	6.7e-14	24.34	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q9D483	8.7e-14	23.40	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q7ZUX1	1.8e-11	21.73	DNA-directed RNA polymerase III subunit RPC3 OS=Danio rerio OX=7955 GN=polr3c PE...	[more]

BLAST of Cucsat.G15514.T34 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651155.1	1.65e-306	99.76	DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis sativus]	[more]
XP_011651154.1	6.16e-305	99.76	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_03...	[more]
XP_008439235.1	4.61e-295	96.24	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Cucumis melo...	[more]
XP_008439232.1	1.70e-293	96.24	PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo...	[more]
XP_038878063.1	7.78e-271	88.26	DNA-directed RNA polymerase III subunit RPC3 isoform X2 [Benincasa hispida] >XP_...	[more]

BLAST of Cucsat.G15514.T34 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF3	2.98e-305	99.76	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A1S4DT15	2.23e-295	96.24	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3AYY3	8.21e-294	96.24	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5D3DHJ0	1.59e-261	95.82	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5A7SSU3	4.42e-261	95.82	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 60..240 e-value: 4.1E-17 score: 62.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..80 e-value: 8.8E-16 score: 59.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 261..349 e-value: 2.1E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 1..425

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G15514	Cucsat.G15514	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15514.T34.E1	Cucsat.G15514.T34.E1	exon
Cucsat.G15514.T34.E2	Cucsat.G15514.T34.E2	exon
Cucsat.G15514.T34.E3	Cucsat.G15514.T34.E3	exon
Cucsat.G15514.T34.E4	Cucsat.G15514.T34.E4	exon
Cucsat.G15514.T34.E5	Cucsat.G15514.T34.E5	exon
Cucsat.G15514.T34.E6	Cucsat.G15514.T34.E6	exon
Cucsat.G15514.T34.E7	Cucsat.G15514.T34.E7	exon
Cucsat.G15514.T34.E8	Cucsat.G15514.T34.E8	exon
Cucsat.G15514.T34.E9	Cucsat.G15514.T34.E9	exon
Cucsat.G15514.T34.E10	Cucsat.G15514.T34.E10	exon
Cucsat.G15514.T34.E11	Cucsat.G15514.T34.E11	exon
Cucsat.G15514.T34.E12	Cucsat.G15514.T34.E12	exon
Cucsat.G15514.T34.E13	Cucsat.G15514.T34.E13	exon
Cucsat.G15514.T34.E14	Cucsat.G15514.T34.E14	exon
Cucsat.G15514.T34.E15	Cucsat.G15514.T34.E15	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15514.T34.C1	Cucsat.G15514.T34.C1	CDS
Cucsat.G15514.T34.C2	Cucsat.G15514.T34.C2	CDS
Cucsat.G15514.T34.C3	Cucsat.G15514.T34.C3	CDS
Cucsat.G15514.T34.C4	Cucsat.G15514.T34.C4	CDS
Cucsat.G15514.T34.C5	Cucsat.G15514.T34.C5	CDS
Cucsat.G15514.T34.C6	Cucsat.G15514.T34.C6	CDS
Cucsat.G15514.T34.C7	Cucsat.G15514.T34.C7	CDS
Cucsat.G15514.T34.C8	Cucsat.G15514.T34.C8	CDS
Cucsat.G15514.T34.C9	Cucsat.G15514.T34.C9	CDS
Cucsat.G15514.T34.C10	Cucsat.G15514.T34.C10	CDS
Cucsat.G15514.T34.C11	Cucsat.G15514.T34.C11	CDS
Cucsat.G15514.T34.C12	Cucsat.G15514.T34.C12	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15514.T34	Cucsat.G15514.T34-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity