Cucsat.G15514.T21 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15514.T21
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerase III subunit RPC3
Locationctg2009: 74035 .. 87621 (+)
RNA-Seq ExpressionCucsat.G15514.T21
SyntenyCucsat.G15514.T21
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTATACTAAGCCAACTCACTTTGATCTCGTAATAACATGATTGACAACGACTCAAGTTAGAACAATATTTTGATTGGGTCTCCACACAGTTAGCTTTTCGATTTTGGACAATGAAAATGCTTGTATAGGTTTCTTCTTCGAAAGGAGCTCAAACAAGGTGATCCTTTATCTCCATATATCTTTTCGTTCTTTTTTGCTAAGTGTTTGTCGTGGCTAATTTATGTGGAAGTTGTAAATGGGAACATGATGGGGTGTAAAATTTCAAGGGAGTATTCTAGCTAGGATACACCACTTATTTATGTGGATGATAGTGTGTTGTTATGTAGAGCTTCTTATTGTGATCATATTAGAAAAATTATATCTATTTATGAGAGAGTCTAGTAATTGTGTTAATTTCAATAAATTTGTCATCCTGTTTAGTTCAAATGTTAGTATAAAAAAGCTATCTAGTTAAAGATTTGCATGCATATTTATATATATGTCCTCCATTCACATGTTAAGTGTTTAAATGTATTTTAAAATTTTGGAGACTAAAATTATGATTTGTTAACGTAATTCACTTTATTATGTTATAAAAGATTTGAAAGTTTGAGTTAGGAATTAATTAATTGTTGATTGTGAATTCAATTGAAATGATAAGTAAAAATTTTATTTGATTTTGATAGATGATTAAATAAAATTGAGTTATGAGGGGAATTTAAATTTAGTTTGATGGCTATGGAGACTTAATAAAAGGAAAAAAGGTTTAAATATATTCCTACTTCTTTTATCTCTACTATACTGAAATCTCTATCTTTTACTTTATTAAATGTAAAATTTAGATAACTTTTACTTTTTCCATTTTATCATCACTTTTAAAAAAATAGTTACAATTCTTACCATTGATTTTTTTTCGTCTTACCACATCGTTTTATTAAAACCAAACCATGTTTGATTTTTCCTTTAACAAAAACTACTGAATTACTAGAAAGGAGACTGAGAAAGTAAACTCGACCACGAGGCAACCCGCTTCGTTAGGCGCATATTGCCATTAGAGAAATTGCCAAGAAGAAAAATAAAGCTCCAGATTGTTAAGGCGCCATAAGACTGGTCCGAAGGACTATCTACTAGGAAATTTGAGAAGCGCATGAAATTCAGAGGCTCAATGTAATATGAGTTGAATTGCGCCTCCGTCCGGGAGTGCCAAAGAAAGGTCCAGGTGATTTATCCGGAGGACTTTCCGTAATTAACCTAACTTTGGCATTAAATAGATGATTTAGGCATTAGTTTTATCTTCTATAGTTGTCGACTATGTTGTATGTCTATACACTTTTTTATAATCTCTAAAATCAAGTTTTTGACAAATATTAATAATCGGTTAATATCTTTTTAATATTAATTTTGAATAAAAATTTGAAAAGTGTTGAAGTGTCACGATGAGTTGGATCAAAACTAATTCTTTTAAATTTCTCTTTATCTCTTAAAGGGTGATCATCGGTTGACCAAACTTGGTTTTATTGATCTCGAACCAACCATAGTCAATATACTAAATGTTCAAACTGACATCGACATCAATGAGTAAGAGTCACTAGGTTGGTTTACCACACTTATAAATACTTTTTGAAAATTCTCAACTTGAAACTTTTCGAAACCGACCACAATCGTACCCTCTCATTTTCTAACCCGTCGACTTCGGTTTGGCTAGTCGGTTCGATTCTATCATGCTCACCTCTAATATTTTTTATGGAAGAAAAAGAGAGAAGAAAAGGAAGACACTTCAACACTCCGTCAAATTAAAATTTAATAATACTTTAAGTACTTTTTAAACTTATTATTGAGATCGGACTAAACGGACCAATTTAAAACATGAGACTAAATGTACCTGTATTTTAAACAAGTTATTATATGTGTGTGTATATACATGTCTTTATCTTAAAAATGAGCTTACGGCAATAATTATTTTTAGGCTATTTTATCCAAATAAATTCCTACTGTTTAATCTTTAAACTAATCCTTCACTAATCGATGTTATTTATTTAAATAAATAAAAAAAAAACGTTCACAGAGAGAAGAGGATATGTGGACATTTCTAATCCTACGCTAATTAATTAGTATTGTTTACTTAAAAGGTTAACATTTAAATATCTATCACGGTGTGGTTTGTGGATATTTATGATTATGGGTTTATGGTTTATTTTCAAAATTTGAGAATATAAATAAGTTTGGAAGTTAACCTTCTTTTTTTTTAAAAAAAAATTAAGATAATGGTTACATATATGATATTATGACAAGTATTATTTATTACAATTTTCAAATTCCACTAGTGATGTCCAAAAAAGTAATGTATCTATCGTAGCATTTGTATTTCTTATAAGAGTGCTATGCATGTGGTGAGTAAATTTTTATGATAAATTATTGTATGGTCACTAATACATTATGATAAATTTGTAGTTTTCGTAGTGAACATGGTAATAGAAGATTTGAAAAATTTTAAAATACCTAAGATTTTAAAGGAAGTTGGAAAATATAAAAACAAAAAATGGAAAAGTTTTATAGGTGCCAAAAGTTGTTGCAATTGAAACGGCAACCCTACGTTTCATATTTGTTTATTGTTTATCATTTAACAAAGTTACTTAAAATATTATCACAATATAATATTTGTTCTTCCTCATGTTTCTATTTTCTTTTTATGATTAATATTTGTATATAAAATCCAAACTTTAAATTAAAACAACTTATAGAATTTTGGACATTTTAAAGTTCACTATTAATTCTATTCTATAACATTGTAAGTTAAATTTGAGCTTGTGCATTATGCATTATTAATTGAATTGAATTTGTTTTCCTAGTTTTCACTGCTATTCAATTATACAACAACAATTACTAAAAGGTTTTGAGATCAAACAATACTATATATATATATATTGGTTGCATTTACACATTTAAAAAAATTCAATGAAAACATTAAGGGTTTTGTTAAATTCAAATGTTAAAAATTTAAGGTGAAAAACGTATATGCACAATAATATTACTTATTTACTCATTAATGTTAAAGTGATATTTTCAATTATAACTAAAAAAAATTCGAAACTATTTACCAACTCTAACGAAATCATCAAAAGAAAAATAAAAAAGTTTAGAGTTCATTTGAATTTTTTAAAATTATATTTTGTAAATATTTTTTTCTTTATAACAATTCTTCTGTATATAATTTCAAAAGAAAGAAAAGGAAAAATTTAAAGAAAGAAAGTTGTAGGCGTTGCAGGTTTGTGAATTCCGGTATATATAAATAGGGTTTAAAGAAAAGGAGAGAAAAAAGATTAAACTCACACTTCTTCCTCCACTCTCTTCCCTCCTCAGTTACGCCAGCTGCCGGCCACAACCAGCAAGTCGCTACCTTCCTTCTTTCGTGCCGGAGTTGCTCGTCGCTGCCGTCGGAATTTCCCGTTCACCTGTCGGTTACCGCCGTATCTCACCGAAAATTTAGTTTGGGTAAGATTTTCGTGCTTTTCTACAATTTTAGTTGAATACCTTGAATGCCCATTAACTTTTGGGTTTGGTTGGTTAACATCCGAAACTGGGTTTGGTTGGTTAACATCCGTTTGGTTAGATATTGTATTAAATTTGTCTTCATCCATTTTTTGGGTACATTGGTGATTTGAGAGGTTTGAGACCAGTTTCGGCGGGAATTTCGGCAAGTATTTCAACTTTAGAGTTGTTTGTTGTTTGGGATGTTACCAATTAAGATTACAAGTGATGTTATTTGCATTTACCTATATGTCTATGACGTGGACCAGCTAGTATTAACTTGAATGTTAAGTAAGTAGGTGACGATTTGCCCTCCTAACATTGTTATGTTTTCGGGTGCCACTGGGTTCCCTGCTATGTTATTAGGTGCCACCAGGTACATGTCGGGCTTCCTGGACAGTTGTTTTCAAGTACCTCAGAATTCTATTAACAGTCGCCATGTGTTCCTCATAGGGGACTTGCATGAACTGGCTAACTATACTCACAACATAGGATATATCTGATCTAGTGCGAAACAAATAAATCAACTCTTCCACAAGGTTCTGATATTTTTTTGTCAATTGGAACTTTATCACTTGAATTTCTCAGTTTACAGTTGAACTCAATAGGGGTATGAGCAGGACTACATCCTAGCATGCATGTTTCAATCAACAAATCAACTGTATACTTTCTTTGAGATGCAACGATACCATCTTTTGATCTAGCTACCTCCATCCTAAGGAAATACTTTAGATTTTCCAAGTCTTTAATTTCAAACTCATTACCCATCTTCTTTTTTAGTTGGATGATCTCAACAGCGTCATCCCCAGATAATACAATGTCATCAACATAGACAATCAACACGGGCGATCTTCCCAGCCTTGGAGACTTTCGTAAACAAAGTGTGATCAAAGTGCTCATGATTGTACCCTTGAGACTTGAAAAAGGAAGTAAACCTATCAAACCATGCTCCTGGTGACTGTTTTAAACCATACAAGGATTTTTGAAATTTGCAAACCTAATGATCAAACTAGGCTTCAAATCCTGGAGGGGGGCTCATATAGATTTCGTCTACTAAGTCTCCATTCAAGTTGATATAGGGACCAGTCTTTATTCTCATCAACTGATAATAGGACTCCAACGGTGTTTAGTTTTGCAACTGAGGAAAAAGTTTAAGAGTAATCAACTCCATACGTCTGAATAAACCCTTTTGCAACTAATTTGGTTTTGTATCTGTCAAGAGTTCCATCTGTCTTGTACTTGAGTGTAAACACCCATTTACATCCCACGGTTTTATGCCCCTTAGGGAGATTATAGATCTCGTAGCTCTTGTGCTTTTCAAGAGCTCTCATCTCTTCCATAATTGCAGTTTTCCACTCAAGGAACTCTAAAGCAAGTGGATATTTTTAGGTATCATGGTAGAGTCAAGGCTGGCTATAAAGGCTCTGAACTATGGTGATAAGATCTGATAGGAAACATAGTTATAGATAAAGTGTTTCGTGCAAGACCTGATACCTTTTCTTAGCACAATAAGGATTTCAAGAGAAGAATCATTCTCATCTAAATTACCTCAATGATTCGGTTTAGCCTCATCACCTGTCGTTTTTGCCATGACCTCAATCTCATCAACGTTTTCAACACTGCCTTTTTGTCCCATTTTTTGAAGAACAATTGTATTAGACTTGCCATTCTCAGCCATTCCAGAAGGTGATGGTTCTTTCTCTCGACAACCCGATTTTGCTGGGGTGTGTAAGCATAGGAGCTTTGATGAACAATCCCTTTGGATGGCAGAGACTCAAAGGAATAGTTTTGAAATTCATGACCATTGTCACTTTGTAGAATTGCAATTTTTGCATTGAACTGCGGTTCGACGGTGTGAAAGAAGTCCTAAAAAGTGGAGGTGACCTCAGATATGTCAAAGATGAGAAAGATCCAGGTAAGATGGGTATGGTCATCAATGAATGTCACAAACCACCCTTTTCCAGAGGCAGTAGTAACCTTGGATGTTCCCCATACATCGCTATGGATAGGAATGAAAGGTTAGGTTGGTTTGTATGGTTGGGAGGGAAAGGAGGCCCGATGCTGTTTTGGATGAATACACACATCAAGATAAGGTAGAGACATCAACATTAGAGAAGAGATGAGATGAGGAAATAAATGTTTCATATATTGAAAATTGGGATGGCCCATACGAAAATGGCAAAACATACAGTCCTTTTCAGAAGTAGTAAAGTCCACAGATAAAAGAGGAAGAAGATTAAAGAGAGAAATATGAAGATCAATGAAGAATCTCTTTGTTAAATTGTTGAAGATATTCAAGTGGGCTATATTTTGCAAGACTGTGTGAGGACTCTACGGTTGTTATTTATTTGCTATTATTATTTTTGTCCCTTTAGTTTTGAATTGGGGCAATGAGCTTTTTAAACATACTGCTTATTTTTGGATTAGGAAATATTAGATGAGTTCCTTATCTTTTTTCTTATAAAAAGGTCAACCTAAAAACAAATATGCCAAATTGTGTGTCACATACGCATCTATTCTTTGTCTCACATAAAGTACTTGTGGTTTGTTTTAAATGATTGAACTCGGAGGGTTCTAGTCACTTCGCAATTAAACATTTCTAAAATTTTCCAGCTTTTGGTCTATGATTTCTAGGGGTACCCCGAACTCAGGTTTTATGTTATTTGAAATTATATTTAGTTGAAATTCTTTACTTTATGAGTGGTTTGATTCTTTCGTTTTGGTTGTAAAAGTTTACTTTCAAATTTATGCATGCATAAGGTAGTGAGTATTGACCCTGTTAGTAGTCTTAAAGAGTTGGGTTGTTACATTTTGAGACACTGAAACCTTGGTGACATTGACGGTGACGGCGAGTACCAACGACGGCAGTGACTGCGTTCATCACATAGCCGTTCCTGTAATATTCCTATTTTGTGTAGGCTTTATCAGAAACTTTCTTTTGTTGTTTTGTACTTTTTCTTGAGGAAAGAAATTGCTTATTTTTTTACATCAACGTTGAACAAAGTGTTTGTTGTTCGTAGTTCTAAGATATTTGGTTGATACTTTGTTTATGACCTTCCTCACGTGGGTTTGCAAGTGCGAGACATGGCAAGAGATTTCAGAAGTTTCTAAGGGTCTTTTTTCTTACTGTACTTTTGTTATTGATATTCTGGAATAATTAACTATAAATTGTTGGTTGGTACTTAAGGATGTCATAGACGGACAACAATCTTAAAGAAGAAAATATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTGTATGCTTTTCTTTTTTAATCCTCGCTTCAGAAATTATCAGCTTCTTCTTCATCTTCTACGTATTATCGTTGTTGATCAGTATTGTTTGTGCATTGACAGAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTAGAGAGTTCTGGGTCTTTGTATTTTTTGGTAAAGTTAATTGATGCTTCGTTAATTATTGGCAAAAGAACACTCACGAGCTAACAGAGCAACCCTTTTATCTTAAATTGTATCTGGACTTCAGAATTGAGTTCCACATAACTGGGATTATAAACAGTGTTTTGGTAGGATTTATTTATGCTCAGTGACACTGTCTAAAGTCCATTCGTCTTTTAAACTTATTAGCTTTGATAGGAAGCTATTATATGGAATCACATTGGATATTATTGGATAAATGGGATTTTGAAGAGGTAGTTGTATTCTCAGAAAGCACACCACTTGTGTACAAATTGTGCTTCTTATCACTGTTTCTGTAATTGTTTGTATAGGTGAGTTTGGAGATGCATCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATGTTAGTTCATTTACTCACAATGAAAAAATATGTTTTATTGAGAAATTTCCAGATTCAAGTTAAGTTATTTTCTCAACTTACGTTTCTGATTTTGTAGTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGCAAGTTTGTTACCTGGTATTTTTATTTGCATGTTATTGTTCTCTTCTATCTGCTTTATCGCTTACTATGATATGTTCTCTCAGTGTCTACAAATCAGATATTGATTTCAATTTTTAAATGGAACGTTATGATTCATTATAGGGAGATGGACAGATCCCATAGATAATTTTCTTTACAATTCTTATTAGTCCTAATATTAGATTTTATTGTTTGAGCAAGAAGCTCATATCTTTGAACAAGTGGAATTACTATGGAGGGGGAAGAATGTCAATGCTGTTCTCTAACTACTCTGTTTCTCTGATTCTAGCCAATTGCCAATGTTTATCCCCCCTTGACTTTGTTGGGGTTTCATTTATCAATTATATTTCTTTTTGTTTAAACTTGTTTTTCTTTCATTTTCATCTTGTTTAGAAAAGTAAAATTGGTTTTTATTTCCTAAAGGCTAAAACCATGATACATTTGGCCGAACTTACTGAACAAGCACATTAAAGAAGAAATTAACATAATCCAGAAGGTGGTTCTTGCACTGAGAAAGTATTTGTAACACTTATTTGCTTTCAATACATCAACTATTACAAATGTTTCGTTACTGAAGTATTGTTTCTGCATTTTAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAACTGTCGGTCTGAAACTTTTTGTGCAATATGGTGTCAACTATTACCTTTGTGTTATTAAGTGGATTTGTTACAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGGTATGCATGAGAATGTTATATGATACCAAATTACTTGGTCAAAACATGTTTAGTCTTGCTCATAATTTTTCTGTAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGTTAGTACTATTTTATATTTTATCTTAGGAATTTTTGTACCTTTTAGTTAGGTGATATGACATTCACTGTTACAAGGAATGTCACGCCTCTTTAGTTTCATTCACATTAAGGATGGTTGATGGGAAAGAAAAACGGACATGACAAAAATGAGCAATTTACTCACTTGAAGCCTATTGATGGAAGACTTCAGTGTGCAACTTTTTCAGAGACATTGGTATTATTATTATTATTATTATTTTATATAATATGTAGAACAAATATAGAAGCAGAACCTAAAACCCTTGTGGGTGACCTATTGGACCCTGAGCCTGTGAGGAGGAATTGAACAAAAGACCCCAATCTAAAAACAATGGGGAGAGAATGAATATTACTATATGAATTGTGTAAACTGTAGAACTCGATTTATTGGAGGTTGAATACTGACTTTGGACACAAGATGGGCTTGCTAATGTTATACAAGAACGTGAAATAACTAGCTTCTTTGAGTGTTCTAATTGGTCACCCATGTTGCCCTTCACATTTTTGTTTATTTTCCTTCTTTTGATCGATTCCTTTTTCATTGTGATAATTTTGGAAATGTACTTGTTATCTACATTCCAGTAGTAATTGGATCAATATCTTTGTATGGCTCTAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAATCTAATGCTTCTGTAGATTCCTCATACAGTTTAGTTATGCAAGTGTTTGATCTTGATGCACATTCATTGTATTACACAAATCATTTATTTTTTCCTTCCTTTCCTGTTGGGTCTGGAATTTAAGAAATTGTTTGGAGATTCTTTTGAAGACCACTTGCTACTTTTAAAAATAAAATATTAGTGAAAACATGCTGGCTTGATTGCTTTATACAAGTATTTATATATATATTTATAAATATATAGACGAATTTATGCAAGTTGTTTTCTAATGTTTTCTTTTGGTTTGTTTTTAAAGGTGAGTTGGTTGATTCTTTGAATAATTGAAATTGTTTTTTTTCTAAAACGATTGGATGCATGGTTAATACATTTTGTAAAGACTAAATCATGAAAGGTAGGGCTCAAGAAATATAATAGAACGACTTGTGATTTGGAAACCATTAGAAATGTTTTTCCTTTATCACCGATTCACCTGTGTGCCCTTTCTGTGTCCTGTTTTAAAGTTTCAATGGTTTGCAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATAGATGATTATAAAATCAGTATGTTCACCACTGTCGATTTCTCAATGTGTTTACATTTTACACTTCTGAGTGAGTTTAAGCTTTTCTAAAAACATGTGATTGCACAGATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTCTCTCCCTCACTCTCATACATCTAGTGAAAAGTACACATATGTTCTCTTGAGTCTTGAGAAATGATTCTATTTCTTCTTGCAATCAGTAGATTGAAATCTCTGATGTGAGTTAGTACTTAATTTCTTTAAATAACAACTTTGATTGAGTAAAAATGAAAGAATACATAGAAATCACTCATCGGAAAAACCAAGCCCACTAAAATGGGAACCATTTATAAGTAGGGCTCTGGCTTTCAAAATAGATCCTATAGAATAATTCACAAAAGGTCATTGAGGGAAACATTTCTTCTCCGATCCCTTGCACTTTCAGAGATTGATTAATCTATAGCCAACAAACTTGGATTCTCTTCGTTACAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAAGAGTTTTCTGCCGGTTACACTCAAGATTGTCCGATGAGTGTAATGTATACATTTTATCTTGAAATATATATAATTTACATGTGAATTCAACTAAAAAACCAATAATATAATGGGTTACCCTTCTGCCCTTACAAATCGTTGTCAAGATTACTAGGAATTGCTCTTTTTTTACTCAGTATTTTGAAATTGGCCATTTGTGATTTTGTTTTTTTGGTTAATTATTTGACAGATATTCCATTTCTTTTCCTGTAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGGTAAACATCTTTGCTCTGTAAGCACGTGTTTTTTGCATCCAAATTCACATATTTACAAATCATGAAGTAAAAGATAATACCATACCCTTTTTTCCAATGAGAAAGCACGGAACTGTCATTGATAGAATAAAAAAAACATAAAGGAGTGAGTGACCATGGAGGAAGCAAAAATATCATACTAGATTACTTGTTCAATTCTTCATGGCATCAGACTTATTGGTTTCCAGTACATTAATTAAATACTCAAGATAATTGTGTGTAATCAGACATGGATGTAACCAGAAAAATAATTACAGGAATAGTTAATATTTAATCAGGTAACATATGTTTTATTATTAGGATTGGTTGTAGTTTTATTAGCAGTTCTGCACATCTTTGATTTAAATGTCCTTATATCTTGTCTTTGTTTCTTCATTTCTTCCTTTCTGTGTATCGTCTTCTACCTGCACCGGCTACCCATGTTCTTTTGCAGCTTGAGTGAGTTACCTTGTTAGTCGTTTTTGGGGCATCATAGTGAAACAATTTATCTTTGTTGCAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGGTTAATGTGAAAATTTACTTATTTCGTATGTGCAATTGGTGGTATTTGTTTCCAGGGTTGGGATTAGATGGGTTAGACATCCTAAGTCCAATCCCTTGTCTGGGACAAGCGTATAGGAGTCCAGCTTCCTACCCTCTTTCGAATGAGTTTGAATAGTTAACTTTATTCAAACTCATGAGTTACCTTTTTTTCTTTTCTAATTTAATCTAGAAGGTTTATTGGTCAATTTCCAAAGACAACCTTGGCAAACTAACCTCTGGCTACCAACTAATGTTGAAAAACATTAACAAAAGCACTTTGAATAAAAATATAAATATCACAAATATCACATATCAACCTAACTGCCTGCCGGTCTTAACATTGCCAGATTTGAGATTTCAAGGCTAGGCACCAAACACCCCCTTGGTTAAGACTTAACAGTGATATTGACCACAAGTATGTTTTTCACTAATCTGGTTACTTTAGCCTTTGTCATCTTATTCGTGTGGTGTCCCATAGCAGAACATTTTAGGATATGCCAAATGTGGATTTTGCCAACTTTTATCAGTAATGGCTAGAAAACCACCTTTGTGGTTGCATGACAGGATACTTGTATGTGAACTGAAGTTGAAACCTGTTTTGGGGGTGTAATCGGTTCAGTTACGCTTGGTTTTAACCTCAAACCGAACTGTCATAACTTATGAAAATAAGAAAACTGCACGAAACTGCTGAAGGGATATTAACTGAAGTGCACATAGCCAATATAAACTGGTTTACTCGGCTCTGTTTCCTGTTAACATTATTAATGTTCGGTTTTGGTCTCGACCATGGAGCCGAATTCATTATTATTGGATCGAGGACTAAAGCGTGTCAGGAAATTTGTGTTAACTGTGTGTCAACATTCAAAATAAAATATTTGTGTTCGCCTAGGCTCAAACACGTGCATTAGACTATTCAGTCCAATGAAACTGCCACTGGAGTGGAGCCATCCGCTGTCTTCATATAAATATAGTTTTGCGGTCGGCTTGGTTATATTATAACTGCTGAATGCTAAACCCATCTCCAAACCTGTTTTGCCCTCGCACCCCTACCGTTTTATATAATCACCCCTTTAAGCGTATTCTCTATGTCGTTTGTCTTAGTTTGATTAATTTTCGCTTTTGCTCTGTTCCCTTACAAAACTAGTACTTTCATTATCATTTACTTTAATAATAGTTTTGGAGTGAAGATCTGATTCTGGTGACTATTCCTTTCATGCTTTCTCAGTGGACAAGTTCAAATACTGACTTCTTGCTTTTGTCATCTATTTTCCAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTGAATTTGAAAATTCAGATCAGTAGCTCATTGAGGAGTGTATTATATGGAGGAAACTTCTTTCAAACTTGAGAACAAAAATTGTGTTTTCTTCTTTCTATTGGAATACATGAATTTCACTGTCCTTATAAATATTATTTTTTTAATAATATATATATATATATATTTTAGTTACCACATCATTGAGAGACTTGTCAATCACAATAGAGCTAAGGTTTTAGTTTTAGGGGTTTACATGGAGGTATTTTTTCCCTCATAAATGGTT

Coding sequence (CDS)

ATGGTGATGACTCAGTATGGCATCAAATATGCCGTCCACATTATGACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGTGAAACCCTGCTTCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCCCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTCCAAGCCTTCACTGATGTGACAGAAGGTGAGTTTGGAGATGCATCCAAGGATGATACACTATACTTGGCATTGTTTAGTAATATACTTCATCGTATGAGGTTTTCCAAATTTGTGGCAATTGCTTCCCAGAAGCTTGGGCAAGATAAAAATTGTCAAGAACTTCTCGAGGGTCTGCTACAGAATGGTAGGCTTTCAATGGAACAACTGGTTGAAAGAGCAGAGTCGAGTGGACGTGCAGGAAACCATCCAATTTCAGATGTTGTACACGACAGTCTATTTAAACTTTTGAATGCCCATTTTGTTGAACGCTGTCCAGCCCCAGAACCAACTCTTTCGCCCAAAGTTGAAGAACCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTATAGAAGCAGCACGTCCAGTGGAAGTTCTAAGATTTTCAATGGGTGATACCAACCCAGAAGCTGAAAAGAGTGAACATCACTCACAAATTTCTGGACAGAAGCGCAAACACGACGATCTAGAGATTGCACAAGATTCTGGAGATGCAGATGGTCCTATTCTTTGGCGTGCCAACTACGACGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTCGATGATGGAGTGGTAAATGTCTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTAGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTTGCTGCATTGGGTTGTCCGGGGATAGATGATTATAAAATCAATTTACGGAGGATAATCGAACAAGCTCAAACTGATGAGGTTGAATCAATTGTTTTGAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTTCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCGTTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGACATTCACTATGCTTGTTGTGGAGAGTAGACAGATATAACTTATGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACTGGCTCATGAGATCGAAGAAAACAAAGAGCTTCTGAGTCTTCCAAAAGATAACAACAACAAACCCCTCGTGAAAAAAATGCATCATTTTGAGAATGTCAGAAACCTCCTGCGGTCATCACTGGTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTGA

Protein sequence

MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF
Homology
[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-25
Identity = 128/497 (25.75%), Postives = 223/497 (44.87%), Query Frame = 0 

Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +L+QH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60

Query: 63  NCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++   ++ L  D   + ++E 
Sbjct: 61  NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+L+M  +V    +R   +   G       V ++  +L + HFV+RCP+   T + 
Sbjct: 121 LLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDT--NPEAEKSEHHSQI 242
               PPP    A    I+E    L  +L    +  +  R S  D    P+A++ ++ +  
Sbjct: 181 DPGPPPP----APTLVINEKDMYLVPKLSLIGKG-KRRRSSDEDAAGEPKAKRPKYTT-- 240

Query: 243 SGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFD---DGVVNVL 302
                  D+ E   D G     I W+AN D F +  R +A +  V ++ D     +V  +
Sbjct: 241 -------DNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 300

Query: 303 SAILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAAL 362
             + E T SS        T PLS + I+        + K  + + +TL  D     +   
Sbjct: 301 LRMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKS 360

Query: 363 GCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSF 422
           G  G   Y INL + +    T  +ES+V +R+G    R+FR + +    +E +++ D + 
Sbjct: 361 GDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAM 420

Query: 423 VDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASL 480
           +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  
Sbjct: 421 IPAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIA 461

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-24
Identity = 127/494 (25.71%), Postives = 217/494 (43.93%), Query Frame = 0 

Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +LIQH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60

Query: 63  NCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  + +L  +R+ +++  A  K       + ++E 
Sbjct: 61  NLV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA--KTLYSDTGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L++ HFV+RCP    T + 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPLVPATENS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    +SE    L  +L    +  +  R S  D   E +          
Sbjct: 181 DTGPPPP----APTLVVSEKDMYLVPKLSLIGKG-KRRRSSDEDATGEPKAKR------- 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
            K+  D+ E   D G     I W+AN D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 PKQTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 300

Query: 303 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCP 362
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G  
Sbjct: 301 --RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS 360

Query: 363 GIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDK 422
           G   Y INL + +    T  +ES+V +R+G    R+FR + +   L E +++ D + +  
Sbjct: 361 GGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 420

Query: 423 NEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 421 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLI 461

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-23
Identity = 122/494 (24.70%), Postives = 213/494 (43.12%), Query Frame = 0 

Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++       G     + ++E 
Sbjct: 61  NLV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGD--TGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    T S 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    I+E    L  +L    +         G     +++       + 
Sbjct: 181 DPGPPPP----APNLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGEPKAK 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
           + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 KPRCTDNEEPTPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 300

Query: 303 ATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCP 362
             R SE    +    T PLS + I+        + K  + + +TL  D     +   G  
Sbjct: 301 --RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDS 360

Query: 363 GIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDK 422
           G   Y INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D + +  
Sbjct: 361 GGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 420

Query: 423 NEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQ 480
            EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL 
Sbjct: 421 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLI 460

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.5e-23
Identity = 118/492 (23.98%), Postives = 212/492 (43.09%), Query Frame = 0 

Query: 3   MTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLEG 122
           N V          +    +    Y A  S +L  +R+ +++       G     + ++E 
Sbjct: 61  NLVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGD--TGELIVEE 120

Query: 123 LLQNGRLSMEQLV----ERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSP 182
           LL NG+++M  +V    +R   +   G       V ++  +L + HFV+RCP    T S 
Sbjct: 121 LLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPDTDSS 180

Query: 183 KVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISG 242
               PPP    A    I+E    L  +L    +         G     +++       + 
Sbjct: 181 DRGPPPP----APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDATGEPKAK 240

Query: 243 QKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 302
           + R  D+ E + D G     I W+ N D F +  R +A +  V ++ D     ++  +L 
Sbjct: 241 KPRYTDNKEPSPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLR 300

Query: 303 ATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLAALGCPGI 362
            +  +        T PLS + I+        + K  + + +TL  D     +   G  G 
Sbjct: 301 MSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDSGG 360

Query: 363 DDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 422
             + INL + +    T  +ES++ +R+G    R+FR + +   L E +++ D + +   E
Sbjct: 361 GMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPAKE 420

Query: 423 APKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           A  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R
Sbjct: 421 AKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIER 460

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.8e-16
Identity = 134/672 (19.94%), Postives = 255/672 (37.95%), Query Frame = 0 

Query: 6   YGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LTPSQVNNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L+++G  + +++ +       LT  ++   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTDVTEGEF-----GDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQD 125
           HN V   +    +T+ E      G+    D++Y A+  N +HR+RF KF+       G +
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121

Query: 126 KNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVV----HDSLFKLLNAHFVERC 185
                +LE L+ +GRL M+ L+++A    R       D +     D+  KL+   F+ R 
Sbjct: 122 --AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRA 181

Query: 186 PAPEPTLSPKVEEPPPRKR-------------GAKAAKISEV------------PETLEQ 245
           P P P    +      ++              GA   K S+             P +   
Sbjct: 182 PRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSSNGPLSSVD 241

Query: 246 RLIEAARPVEVLRFSMGDTN-PEAEKSEHHSQIS----------------GQKRKHDDLE 305
                A  +E+L      T  P   K     + S                G+KRK  D+ 
Sbjct: 242 NSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGRKRKSRDIY 301

Query: 306 IAQDSGDAD--------------------------------------------------- 365
              D  + D                                                   
Sbjct: 302 DEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKLDQSSSTTT 361

Query: 366 ------------------GPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 425
                               +LW  NY++FI   + KAC + V  + +     + +A+++
Sbjct: 362 TSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVK 421

Query: 426 ATRSSEKIVKTEITVPLSLDNIYEEVMKN-EVGRSMTLDRVEASLAAL------------ 485
             + S +  +  +T  +  +NI EE  ++ +  + M   ++E  L+ +            
Sbjct: 422 LCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMV 481

Query: 486 ------GCPGIDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK 522
                     +  Y++N+  II   +   VESI+ +++G +  R+F+ L     L+E ++
Sbjct: 482 SKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL-LIKNLLEPKQ 541

[Close]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match: XP_011651154.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_031739155.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >KGN57381.1 hypothetical protein Csa_009994 [Cucumis sativus])

HSP 1 Score: 1023 bits (2646), Expect = 0.0
Identity = 519/521 (99.62%), Postives = 520/521 (99.81%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240
           EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK
Sbjct: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240

Query: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300
           RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT
Sbjct: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300

Query: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRRI 360
           RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRRI
Sbjct: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360

Query: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420
           IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK
Sbjct: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420

Query: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480
           DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS
Sbjct: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480

Query: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match: XP_008439232.1 (PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo] >XP_008439233.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo])

HSP 1 Score: 992 bits (2565), Expect = 0.0
Identity = 504/522 (96.55%), Postives = 512/522 (98.08%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 919 bits (2374), Expect = 0.0
Identity = 464/522 (88.89%), Postives = 497/522 (95.21%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLLIRFTELT SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELTSSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFT VTEGEFGDA K DT YLALFSN+LHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNVLHRMRFSKFLAIASEKLRKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERA+SS  AGN PI D+VHDSLFKLLNAHFVERCPAPEP+LSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAQSSKHAGNRPIPDIVHDSLFKLLNAHFVERCPAPEPSLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPP+KRGAKAAKISEVPETLEQR++E+ARP+EVLRFSMGDTN EAEKSEH+SQISGQ
Sbjct: 181 EEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEVLRFSMGDTNTEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHDDLE+ QDSGDAD  ILWRAN+DEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Sbjct: 241 KRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL++LGCPG+DDY+INLR+
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSSLGCPGMDDYQINLRK 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+EENKELL
Sbjct: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLP DN N+PL+K+    + VR LL+SSL+KLDDALMLFHDF
Sbjct: 481 SLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDALMLFHDF 522

[Close]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match: TYK22958.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 910 bits (2352), Expect = 0.0
Identity = 461/479 (96.24%), Postives = 470/479 (98.12%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 479

[Close]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match: KAA0033658.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 910 bits (2352), Expect = 0.0
Identity = 461/479 (96.24%), Postives = 470/479 (98.12%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 29  MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 88

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 89  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 148

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 149 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 208

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 209 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 268

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 269 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 328

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 329 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 388

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 389 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 448

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 449 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 507

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 1023 bits (2646), Expect = 0.0
Identity = 519/521 (99.62%), Postives = 520/521 (99.81%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240
           EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK
Sbjct: 181 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQK 240

Query: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300
           RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT
Sbjct: 241 RKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEAT 300

Query: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRRI 360
           RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRRI
Sbjct: 301 RSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRRI 360

Query: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420
           IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK
Sbjct: 361 IEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWK 420

Query: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480
           DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS
Sbjct: 421 DEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELLS 480

Query: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 LPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 992 bits (2565), Expect = 0.0
Identity = 504/522 (96.55%), Postives = 512/522 (98.08%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           SLPKDNNNKPLVKKMHHFE VRNLLRSSLVKLDDALMLFHDF
Sbjct: 481 SLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match: A0A5A7SSU3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001250 PE=3 SV=1)

HSP 1 Score: 910 bits (2352), Expect = 0.0
Identity = 461/479 (96.24%), Postives = 470/479 (98.12%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 29  MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 88

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 89  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 148

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 149 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 208

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 209 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 268

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 269 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 328

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 329 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 388

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 389 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 448

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 449 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 507

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match: A0A5D3DHJ0 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00630 PE=3 SV=1)

HSP 1 Score: 910 bits (2352), Expect = 0.0
Identity = 461/479 (96.24%), Postives = 470/479 (98.12%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFTDVTEGEFGDA KDDT YLALFSNILHRMRFSKF+AIASQKLGQDKNCQELL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ+VERAESSGRAGN PI DVVHDSLFKLLNAHFVERCPAPEPTLSPKV
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAKI EVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEH+SQISGQ
Sbjct: 181 EEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHYSQISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRKHD+LEIAQDSG ADG ILWRANYDEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Sbjct: 241 KRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDDGVVNVLSAFLEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPG+DDYKINLRR
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKINLRR 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           I+EQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW
Sbjct: 361 IVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEL 478
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKE+
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKEV 479

[Close]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 874 bits (2257), Expect = 0.0
Identity = 440/522 (84.29%), Postives = 485/522 (92.91%), Query Frame = 0 

Query: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
           M  TQYGIKYAVHI+TAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+ SQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTDVTEGEFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120
           QHNCVQAFT VTEGEFGDA K DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ELL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDSLFKLLNAHFVERCPAPEPTLSPKV 180
           EGLLQNGRLSMEQ++ERA+SS  AGN PI DVV++SL KLLNAHFVERCPAPEPTLSP+V
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNESLLKLLNAHFVERCPAPEPTLSPQV 180

Query: 181 EE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEAEKSEHHSQISGQ 240
           EE PPPRKRGAKAAK+SEVP TLEQRL+E+ARP+EV+RFS+G+TN EAE+SEH+S ISGQ
Sbjct: 181 EEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEAEESEHYSSISGQ 240

Query: 241 KRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA 300
           KRK  DL++ Q+SGDADG ILWRAN+DEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Sbjct: 241 KRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDDGAVNVLSAILEA 300

Query: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKINLRR 360
           TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC G++DYKINL++
Sbjct: 301 TRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCSGMEDYKINLQK 360

Query: 361 IIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLW 420
           IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVDKNEAPKILYRLW
Sbjct: 361 IIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVDKNEAPKILYRLW 420

Query: 421 KDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAHEIEENKELL 480
           KDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+E++KELL
Sbjct: 421 KDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEQDKELL 480

Query: 481 SLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521
           +LP D    PL K+ +   NVR LL SSL+KLDDALMLFHDF
Sbjct: 481 NLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

The following BLAST results are available for this feature:
BLAST of Cucsat.G15514.T21 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9BUI46.0e-2525.75DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P... [more]
Q2TBL41.0e-2425.71DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=... [more]
Q5XIL31.9e-2324.70DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po... [more]
Q9D4832.5e-2323.98DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ... [more]
Q55FJ51.8e-1619.94DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468... [more]
BLAST of Cucsat.G15514.T21 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651154.10.099.62DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis sativus] >XP_03... [more]
XP_008439232.10.096.55PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo... [more]
XP_038878061.10.088.89DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_... [more]
TYK22958.10.096.24DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw... [more]
KAA0033658.10.096.24DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Cucumis melo var. makuw... [more]
BLAST of Cucsat.G15514.T21 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBF30.099.62DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3... [more]
A0A1S3AYY30.096.55DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A5A7SSU30.096.24DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3DHJ00.096.24DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1G2560.084.29DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 3..75
e-value: 3.4E-23
score: 83.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 91..176
e-value: 1.9E-19
score: 71.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 264..355
e-value: 1.0E-7
score: 34.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 357..445
e-value: 2.9E-20
score: 74.0
IPR008806RNA polymerase III Rpc82, C -terminalPFAMPF05645RNA_pol_Rpc82coord: 156..336
e-value: 6.6E-17
score: 62.1
IPR013197RNA polymerase III subunit RPC82-related, helix-turn-helixPFAMPF08221HTH_9coord: 10..69
e-value: 7.0E-22
score: 77.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..194
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 3..521

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15514Cucsat.G15514gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15514.T21.E1Cucsat.G15514.T21.E1exon
Cucsat.G15514.T21.E2Cucsat.G15514.T21.E2exon
Cucsat.G15514.T21.E3Cucsat.G15514.T21.E3exon
Cucsat.G15514.T21.E4Cucsat.G15514.T21.E4exon
Cucsat.G15514.T21.E5Cucsat.G15514.T21.E5exon
Cucsat.G15514.T21.E6Cucsat.G15514.T21.E6exon
Cucsat.G15514.T21.E7Cucsat.G15514.T21.E7exon
Cucsat.G15514.T21.E8Cucsat.G15514.T21.E8exon
Cucsat.G15514.T21.E9Cucsat.G15514.T21.E9exon
Cucsat.G15514.T21.E10Cucsat.G15514.T21.E10exon
Cucsat.G15514.T21.E11Cucsat.G15514.T21.E11exon
Cucsat.G15514.T21.E12Cucsat.G15514.T21.E12exon
Cucsat.G15514.T21.E13Cucsat.G15514.T21.E13exon
Cucsat.G15514.T21.E14Cucsat.G15514.T21.E14exon
Cucsat.G15514.T21.E15Cucsat.G15514.T21.E15exon
Cucsat.G15514.T21.E16Cucsat.G15514.T21.E16exon
Cucsat.G15514.T21.E17Cucsat.G15514.T21.E17exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15514.T21.C1Cucsat.G15514.T21.C1CDS
Cucsat.G15514.T21.C2Cucsat.G15514.T21.C2CDS
Cucsat.G15514.T21.C3Cucsat.G15514.T21.C3CDS
Cucsat.G15514.T21.C4Cucsat.G15514.T21.C4CDS
Cucsat.G15514.T21.C5Cucsat.G15514.T21.C5CDS
Cucsat.G15514.T21.C6Cucsat.G15514.T21.C6CDS
Cucsat.G15514.T21.C7Cucsat.G15514.T21.C7CDS
Cucsat.G15514.T21.C8Cucsat.G15514.T21.C8CDS
Cucsat.G15514.T21.C9Cucsat.G15514.T21.C9CDS
Cucsat.G15514.T21.C10Cucsat.G15514.T21.C10CDS
Cucsat.G15514.T21.C11Cucsat.G15514.T21.C11CDS
Cucsat.G15514.T21.C12Cucsat.G15514.T21.C12CDS
Cucsat.G15514.T21.C13Cucsat.G15514.T21.C13CDS
Cucsat.G15514.T21.C14Cucsat.G15514.T21.C14CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15514.T21Cucsat.G15514.T21-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003697 single-stranded DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity