Cucsat.G15416.T4 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAGACATGACAAAAATGATTTTATACTGAAATCACTCCCAAACTCAACTAATTAAATATTTCTTTTAAAACCCATTCAACGCACATAACAACAAAATATAACAGAAAACTGAATAATTCTATTTGAACGTTTTTGCAGAACAAAAAGTATTTGAAAAAAGAAAGCACCTTTCACCAATTAAATGAGTTGATTAAAGGAGAAGTAATTCATAATGACTAGAAGTGGACATAATACCTCAGAAGCTTCCCATTTCCAAGTAATGTCATTTTCCAGACCAAAGCCGCCTGCTAATACCTCCATAGTCAATTCTGTTTGAACCATTCAAAGCCTGGAAATTTCACTAATCAACGCCTATTTCAAAGTCAATAATGGGAGCCAATTCTCTGACCTGCTTTAAGGAAAAAATAAATAAATTATGCATGTGAATGTTGGTAAAATAGTTAATCATGCATCTTCCCTATAAAACACAGGCAATGTCCGCAACCAACAACCAAATAGTAGTTCATTCAAGAGCTTTTCACAGGCAAACAAGCAGCAAACAGAATTTAAGGTTTTTCCATCATGGGAAGGAAACTGGATGCTTTACTGGGAAGGAACAGATATTTGAAGGCTTCCAAGTTTAAGACCCTTGCTAATATGGCCATTTCTAGGACTTCCATCCTAAAAAACCACCACCGCGCCCGTTGCTCCCTAGCTCGTGCCGATGTTCTTCAACTGTTGAATCTTAGTTACCAACATCGTGCTCAGCTTAGAGTAAATTTTTTCTCTCTCTTTCAGAACTCTGTAGTTCAGCCCCTTCTCTTTTTTTTCTTTTTTTCCAACCGCTGAGCTTGGATGTGAACGTTAATGAACAGGTTGAGATTGTGATCAAGGAGAATAACATGTTGGATGCTCTTGGAATGATAGAGGATTACTGCTGCCTTCTCGTAGAAAAGGTGGCTCTTCTTCAGATGAACAAGTAGGTCACCTTTCTTTCCTAGAATTTCACTATGTCATTTTTGTCAACTTTGGATGCAGGCCTTTTCAAAGATTTGAAACCTTTTCTGATTCTCTTTCGGCTTAAATGCAGGGAATGCCCTGGCGAAGTTAAGGAGGCGATATCGAGTCTGATATTTGCAGCTTCAAGGTGCGGAGAGTTTCCAGAACTTCAAGAGATTCGTCGGATTTTCGAGTTGAAGTTTGGTGCGGAGTTTGCAAGCAGTGCCATTGATTTACGCAACAACTGTGGTGTTAGTACCAAGGTGAGTTTGATACTTACCAACTGCAAGAAACGAATTAGTTGTTCGAATATATAATCTCCACTTAATAACCACAGTTTCCATATTACAGATGATTCAAAAGTTTTCAACAAAACAGCCCAGTGCCGAAACTAAACTGAAAGTGCTAAAGGAAATTGCTTCAGAAAATGGCATTCCTCTCCATTTAGAGCAAGAATCACCAATAATCATCAAGGTGAGGAAATATCTTTTTTTTTTTTTTAATTATAATGAAAAGAAACATTTCATTCATATGATAGTGAAGAGCCCCAAACATCAAAAAAGGTGATTACATAAGGGAGCGCCAATTGCTAACTAAAAAATATAAGCTTGAATGGAAAGGTGCTTTATTTTAAACTAAGAAAAAGCGATTAGAAGAGGAAAAAGTGTCACCAAAGAGCCGTATGTTCCTCACCTTGATAGAAAATGAGTGCTTCTACTTCCTAAGTTAACTTTTTAGTAAAAAATTCATCTGTTAACTGCAGGCAAAGCAAAACCAAAAGTTGGAAATCAAGAAAGAAGCAGATTTGTATAATCCTGAAGTCACAAACACCACAGATGATCTACATGAAGTTATTACAAGTGAAAAGATGGCATCGGAATTAGTGAAATCAAAGAAGTTTAAAGATGTAGCTAGTGCCACTGAAGAACCCTTCCAATCGGCAGCTTATGCAGCATTAGCAGCTAAAGCTGCAATCAACCTTTCAAAGTCCAAATCACAGGATATTGATTCAGATCATGAAGATGGCTCTCATCTACAAAAGAATGGAAAAGGCTCAGATTTGAATAGTTCTTATGAACCTAAGCTTAATACAAAAGAAGAAAGAATATCTTCCTGTAAGATTGACTATTCAGACGACAGATTTAGTTTTGAAAAGATTTGTCCTGTTGAACTTGAAAGTTGCAGTTCTCAATATGAAGATGCTGACATGGAAGAAACCAATCAAGAAGAGTTACCAAAAGAACCTGCCAAAGAAAGCACATCCTTTGCTCTAAAAGATTCAGATGTTAACAATATGAAGGAGCAATCATCAAAACCAAATTCAATCTTCTACAACGAGTCAGACGGCGACAAGATAACCAATACAGATAATGAAGTTGCCAGTGGAAAAGAAATTTCAGAAGAAGATATAAGAGTTCACGAATCAAAGTAAATTTATTGGCTAGTCACATCTAGATTGGAAGGAAACGTGTAGTGAAACTTTTGGACCCAGTATACGATCAGTAGTTTCTTATTTCTCAATAAAAGGGTACGAACAATTTTGCT ATGGGAAGGAAACTGGATGCTTTACTGGGAAGGAACAGATATTTGAAGGCTTCCAAGTTTAAGACCCTTGCTAATATGGCCATTTCTAGGACTTCCATCCTAAAAAACCACCACCGCGCCCGTTGCTCCCTAGCTCGTGCCGATGTTCTTCAACTGTTGAATCTTAGTTACCAACATCGTGCTCAGCTTAGAGTTGAGATTGTGATCAAGGAGAATAACATGTTGGATGCTCTTGGAATGATAGAGGATTACTGCTGCCTTCTCGTAGAAAAGGTGGCTCTTCTTCAGATGAACAAGTAG MGRKLDALLGRNRYLKASKFKTLANMAISRTSILKNHHRARCSLARADVLQLLNLSYQHRAQLRVEIVIKENNMLDALGMIEDYCCLLVEKVALLQMNK Homology
BLAST of Cucsat.G15416.T4 vs. ExPASy Swiss-Prot
Match: Q3ZBV1 (IST1 homolog OS=Bos taurus OX=9913 GN=IST1 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04 Identity = 24/85 (28.24%), Postives = 47/85 (55.29%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy Swiss-Prot
Match: P53990 (IST1 homolog OS=Homo sapiens OX=9606 GN=IST1 PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 9.4e-04 Identity = 24/84 (28.57%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy Swiss-Prot
Match: Q9CX00 (IST1 homolog OS=Mus musculus OX=10090 GN=Ist1 PE=1 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 9.4e-04 Identity = 24/84 (28.57%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy Swiss-Prot
Match: Q5R6G8 (IST1 homolog OS=Pongo abelii OX=9601 GN=IST1 PE=2 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 9.4e-04 Identity = 24/84 (28.57%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy Swiss-Prot
Match: Q568Z6 (IST1 homolog OS=Rattus norvegicus OX=10116 GN=Ist1 PE=2 SV=1) HSP 1 Score: 44.3 bits (103), Expect = 9.4e-04 Identity = 24/84 (28.57%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. NCBI nr
Match: XP_011651369.1 (uncharacterized protein LOC105434874 [Cucumis sativus]) HSP 1 Score: 189 bits (480), Expect = 2.75e-56 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. NCBI nr
Match: XP_008461584.1 (PREDICTED: uncharacterized protein LOC103500154 [Cucumis melo]) HSP 1 Score: 181 bits (459), Expect = 3.26e-53 Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. NCBI nr
Match: KAA0063421.1 (putative Regulator of Vps4 activity in the MVB pathway protein [Cucumis melo var. makuwa] >TYK11683.1 putative Regulator of Vps4 activity in the MVB pathway protein [Cucumis melo var. makuwa]) HSP 1 Score: 181 bits (459), Expect = 3.26e-53 Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. NCBI nr
Match: XP_038875575.1 (uncharacterized protein LOC120067980 isoform X2 [Benincasa hispida]) HSP 1 Score: 177 bits (448), Expect = 1.63e-51 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. NCBI nr
Match: XP_038875570.1 (uncharacterized protein LOC120067980 isoform X1 [Benincasa hispida]) HSP 1 Score: 177 bits (448), Expect = 1.66e-51 Identity = 94/99 (94.95%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy TrEMBL
Match: A0A0A0L6Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271380 PE=3 SV=1) HSP 1 Score: 189 bits (480), Expect = 1.33e-56 Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy TrEMBL
Match: A0A5D3CIE3 (Putative Regulator of Vps4 activity in the MVB pathway protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00600 PE=3 SV=1) HSP 1 Score: 181 bits (459), Expect = 1.58e-53 Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy TrEMBL
Match: A0A1S3CEY6 (uncharacterized protein LOC103500154 OS=Cucumis melo OX=3656 GN=LOC103500154 PE=3 SV=1) HSP 1 Score: 181 bits (459), Expect = 1.58e-53 Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy TrEMBL
Match: A0A6J1J838 (uncharacterized protein LOC111482134 OS=Cucurbita maxima OX=3661 GN=LOC111482134 PE=3 SV=1) HSP 1 Score: 173 bits (439), Expect = 8.21e-51 Identity = 91/99 (91.92%), Postives = 94/99 (94.95%), Query Frame = 0
BLAST of Cucsat.G15416.T4 vs. ExPASy TrEMBL
Match: A0A6J1F3M1 (uncharacterized protein LOC111441867 OS=Cucurbita moschata OX=3662 GN=LOC111441867 PE=3 SV=1) HSP 1 Score: 172 bits (435), Expect = 3.25e-50 Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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