Cucsat.G1453.T12 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1453.T12
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Component of oligomeric Golgi complex 4
Location	ctg10: 141085 .. 143947 (+)
RNA-Seq Expression	Cucsat.G1453.T12
Synteny	Cucsat.G1453.T12

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACGGATTATATTTCTTCCGGTTTATGACCCGACCCGGTTTTAATCCGTCAATGGCGCTATCCAAAGCTAATCCATACGCCCACGGTGGGAGAGAAAGAGGAAACGAAGCTTCTTCTTCATCTCCGCCATGGCTAACCTTGCGACCTCCTTAACCTTCTCTTCTTCTTCTTCTCCTTCTCTATGGATCCTCAAACATAAATCTCCAAGTTACTGTACATTCAAACAACTGCACTCTTTCCATTCATCCTTTCACTTCGACTACACGAAGCTCGTTTCCCTAAGGCATAACCATGGGGAAAGGTTTCCAGTGCTTTTCACTGTTCTTGACAATGAATCTGCGCTTACGGAGGAGGCCATTGTGGAAGGTGATGTTAAGAGCGAAGGCAGCCTTTCAAATCAGGAAGTGAAAAAGCTAGCACGTCCTTGTGAGCTATACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCGGAGCTGGTTGAGATGTTTAAACCTTATGGCACAGTCTTGGCTGCTGAGGTAGATACGATTTTTTGTTTTTTGTTTTCCTTCCGCGTCTTTGTGGTTTGCTCATTCGTTTTAGTTTTCCAGAACAATATATTTACTTCTATTTCTGTATGGAATTTCCTTAAATGATTAGTTTGAAAGTTAGAGTAAATTGAACTGGAATTCAGAAAGCATTTCCCCGAATTTGGAATTTTGAATGCTGTCATAATCATTATTCTTGATATGCAGTCCTCAATTTGCTCATCTGCCTTTGTTGAGCATTTTTTTTTTCCTTTTTCTTTCTTGGATTGTACATTGTTCTTGGAGATTGAAGTCAATACACAACGAAATCAATAACCCACTTATTGTTGATAAAAACATTAGACCAAATTAGTTAACTACACTAAACAACAAAATTGAATTGAAATTCAGAAGGCATTATCCGAATTTGGAAGTTTGAATGTTGTTATGGAGTTGGCAAACAAAGAAAACAGAAAAACATAAACAATAGAGTCGATTCACTAAACAGTTTTACTAGAGAGAATAATTCAAGAGATGCCTCTAGGATTAGAGAGTTTATACTAGTGCGCATTTTAAACTCTAGAGACAAAAGCGTAGATAACCAAAAGATGATAAATATATAAATAATTTAGTTTTGAGGGGTTTGCCCCAAACTCTCACTATGGCACGTTGCCCATGGACCTTGATTTGCTAGCGAGATTCTGTACTTGGTCATTCGAAGCACTATAGAAATAAATTTACGAAATTCCAACTGTTATTATAATTGTTATTCTTGAAAGGCAGGCCTCAATTTGCATATCTGCCTTGAGTAAAATGGAATGTGTTTGAGCATTGGTTTTTTCTCTTCCTCCCTCTTGCACTGTACACTGTTCTTGAAGATGGAAGTTAATAATACACAACAAAATCACAAAACCCACTTTTTGTTGACAAAAACAGTAAACCAAATTAGTTAACTGCACTAAACAACAGAATGATCTCCAATAGTTTTTTATATTTCTTTTCATGTTTTGAATGGTATTGATTTGTTTCTCCATAACTTGGACTCAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAAGGATGTGGCTATGTCACAATGGGTTCAATAAACTCGGCTAAAGTTTCAATTACAGCATTAGATGGTTCTGTTAGTGTCAAATTAAGTATAAGTTTGTTTTAATCTTAGCTTATTCAGTATCATTCAAAGATAAAATTTATTATTTTGAAGGATGTTGGGGGACGTGAAATGCGCGTTAGATTTGCAGTTGATATGAATTCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTGTATGTTGGAAATCTTTCGTGGGATGTCAAACCTGGAGACCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAACGATCGTAGAGCTGGAAAAAGCCGCGTTTACGGGTTTCTATCGTTTTCTTCAGCTGCAGAGCGTGATGCATCGATTTCTTTGGATGGAACAGTAAAATTCTCTCTCTATATCCTTTGGAGTTCGACTTTGGAATTCCATTTTTGTTGTTTTGACCCTTTCCTCTCTTTCATTGTAGGAGTACAACAACAGGAAGCTTGTTGTTAGAGAAGGTTTGGAAAGGAGCGAATCTTAAATGCAGTTAGTCTTCTTGCACAAGTTAGAAAGAAATCTCATCTTGTTTAATTGTTTTAAATCAATTATGAGTTTGATCTAGCTATATTAGAATCTTGCAAAGTTTTGTTTTGAGGGTGTTAAAATCTATCATAAGGAATATTCAATCATAAATAGCAGCCATTCTTAGATTCATTGCATAGAAGTCTCTACTTTGGATTTTCTTGGCCGGTAGTTTTGTATTAAATTTGATTATTGTTTAACAAGAGTGGGCTAGTTAATCGGTTTCTGCTACTTGTAATTCTCTTGAGCAGCCATCCTTCTATAAATTGACTGATTCTTTTGATCATTTGTATATGAATAAAAAGTCACTCTTTGAGATCATTTCTTTATTTTAACTTTGAAGGCCAACTAAAGTAATGAACACTACGGAAGAATTATTCAGAAACTTCCTCTGCAAAGGTAACAATGATGGTAAGAGTCTTCATCTTGTCGACTAGGAAAATCTCCTTCATCCCAAGGAGAAAGAAGGGCTCGGCTGAAACGATCGGAATAGAGCCCTCCAAGCAAAATGAATTTGGCGTTATCAATGTGAGAAAATTACTAAGGAACCACGCCTCTCGCAAGAAATATCCCTTATTATATATATATATATATATATATATATTAATCTTTTATCTTTTTCTTAGGGAAGAAGGGAC

Coding sequence (CDS)

ATGGCTAACCTTGCGACCTCCTTAACCTTCTCTTCTTCTTCTTCTCCTTCTCTATGGATCCTCAAACATAAATCTCCAAGTTACTGTACATTCAAACAACTGCACTCTTTCCATTCATCCTTTCACTTCGACTACACGAAGCTCGTTTCCCTAAGGCATAACCATGGGGAAAGGTTTCCAGTGCTTTTCACTGTTCTTGACAATGAATCTGCGCTTACGGAGGAGGCCATTGTGGAAGGTGATGTTAAGAGCGAAGGCAGCCTTTCAAATCAGGAAGTGAAAAAGCTAGCACGTCCTTGTGAGCTATACGTTTGTAATTTGCCGAGGAGTTGCGACATTGCGGAGCTGGTTGAGATGTTTAAACCTTATGGCACAGTCTTGGCTGCTGAGGTTTCTCGGAATCCAGAGACAGGCATAAGCAAAGGATGTGGCTATGTCACAATGGGTTCAATAAACTCGGCTAAAGTTTCAATTACAGCATTAGATGGTTCTGATGTTGGGGGACGTGAAATGCGCGTTAGATTTGCAGTTGATATGAATTCCAAAAAGAGGAACCTTAATAACTTGCATTCATCACCCAAGAAGAATATAATATATGAAAGTCCTTACAAAGTGTATGTTGGAAATCTTTCGTGGGATGTCAAACCTGGAGACCTGAGGAACCTTTTTAGCAGATTTGGAACTGTGGTCAGTGCAAAAGTTTTGAACGATCGTAGAGCTGGAAAAAGCCGCGTTTACGGGTTTCTATCGTTTTCTTCAGCTGCAGAGCGTGATGCATCGATTTCTTTGGATGGAACAGAGTACAACAACAGGAAGCTTGTTGTTAGAGAAGGTTTGGAAAGGAGCGAATCTTAA

Protein sequence

MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES

Homology

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BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-26
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 0


Query: 68  NESALTEEAIVEGDVKSEGSLSNQ-EVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTV 127
           +E  ++E    EGDV SEG++S + E  + +   +L+V NL    +   L  +F+  GTV
Sbjct: 118 SEGDVSEGDESEGDV-SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTV 177

Query: 128 LAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNL 187
             AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A    S+    
Sbjct: 178 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER- 237

Query: 188 NNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVY 247
                +P+   +YE  ++VYVGNL WDV  G L  LFS  G VV A+V+ DR  G+SR +
Sbjct: 238 -----APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 297

Query: 248 GFLSFSSAAERDASIS-LDGTEYNNRKLVVREGLER 282
           GF++ S   E + +IS LDG     R + V    ER
Sbjct: 298 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-26
Identity = 79/222 (35.59%), Postives = 117/222 (52.70%), Query Frame = 0


Query: 76  AIVEGDVKSEGSLS---------------NQEVKKLARPCELYVCNLPRSCDIAELVEMF 135
           A++EG+   EG++S                Q   +     +L+V NLP   D  +L  +F
Sbjct: 16  AVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIF 75

Query: 136 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMN 195
              G V  AEV  N ET  S+G G+VTM ++  A+ ++  L+G D+ GR++ V  A    
Sbjct: 76  DAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRG 135

Query: 196 SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRA 255
           S +R       +P+ +  +E   +VYVGNL WDV    L  LFS  G VVSA+V++DR  
Sbjct: 136 SPER-------APRGD--FEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRET 195

Query: 256 GKSRVYGFLSFSSAAE-RDASISLDGTEYNNRKLVVREGLER 282
           G+SR +GF++ SS +E  DA  +LDG   + R + V    ER
Sbjct: 196 GRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 0


Query: 85  EGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCG 144
           +G    +E +  +   +++V NLP S D A L E+F+  G V   EV  +  TG S+G G
Sbjct: 72  DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 145 YVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYK 204
           +VTM S    + +    +G ++ GR +RV        +KR  ++     +    ++S  +
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP--PEKRENSSFRGGSRGGGSFDSSNR 191

Query: 205 VYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASI-SL 264
           VYVGNL+W V    L  LFS  G VV AKV+ DR +G+SR +GF+++SSA E + +I SL
Sbjct: 192 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 251

Query: 265 DGTEYNNRKLVV 276
           DG + N R + V
Sbjct: 252 DGVDLNGRAIRV 261

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-24
Identity = 64/183 (34.97%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 101 ELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 160
           +L+V NLP   D   L  +F+  GTV  +EV  N +T  S+G G+VTM ++  A+ ++  
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query: 161 LDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLR 220
            +  +V GR + V  A    S+           ++  +Y++ +++YVGNL WDV  G L 
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPE---------RQPRVYDAAFRIYVGNLPWDVDSGRLE 233

Query: 221 NLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASI-SLDGTEYNNRKLVVREGL 280
            LFS  G VV A+V++DR  G+SR +GF+  S+  E + +I +LDG     R + V    
Sbjct: 234 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 287

Query: 281 ERS 283
           ER+
Sbjct: 294 ERT 287

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-24
Identity = 74/229 (32.31%), Postives = 120/229 (52.40%), Query Frame = 0


Query: 58  RFPVLFTVL--DNESALTEEAIVEGDVKS--EGSLSNQEVKKLARPCELYVCNLPRSCDI 117
           +FP   +VL  D+ + + ++    GD  S    +   +E ++ +   +L+V NLP   D 
Sbjct: 51  QFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDS 110

Query: 118 AELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRV 177
             L ++F+  G V  AEV  N ET  S+G G+VTM ++  A  ++      D+ GR + V
Sbjct: 111 EGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTV 170

Query: 178 RFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAK 237
             A    S+         +P+    ++  Y++YVGN+ WD+    L  +FS  G VVSA+
Sbjct: 171 NKAAPRGSRPER------APR---TFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSAR 230

Query: 238 VLNDRRAGKSRVYGFLSFSSAAERDASI-SLDGTEYNNRKLVVREGLER 282
           V+ DR +G+SR +GF++ SS AE   +I +LDG   + R + V    ER
Sbjct: 231 VVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270

[Close]

BLAST of Cucsat.G1453.T12 vs. NCBI nr
Match: XP_004140529.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656820.1 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656821.1 28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN46473.1 hypothetical protein Csa_005398 [Cucumis sativus])

HSP 1 Score: 552 bits (1423), Expect = 5.40e-198
Identity = 284/286 (99.30%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPS--LWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER 60
           MANLATSLTFSSSSSPS  LWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER 60

Query: 61  FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE 120
           FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE
Sbjct: 61  FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE 120

Query: 121 MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD 180
           MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD
Sbjct: 121 MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD 180

Query: 181 MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR 240
           MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR
Sbjct: 181 MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR 240

Query: 241 RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES
Sbjct: 241 RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286

[Close]

BLAST of Cucsat.G1453.T12 vs. NCBI nr
Match: XP_008459818.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459819.1 PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459820.1 PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0039803.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK24694.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 533 bits (1374), Expect = 1.48e-190
Identity = 272/284 (95.77%), Postives = 277/284 (97.54%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFP 60
           MANLATSLTFSSSSSPSLWILKHKSP+YCTFKQLHSF SSFHFDYTKLVSLRHNHGERFP
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVSLRHNHGERFP 60

Query: 61  VLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120
           VLFTVLDNESALTEEAIVEGDVKSE S+SNQEVKKLARPCELYVCNLPRSCDIAELVEMF
Sbjct: 61  VLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120

Query: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMN 180
           KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGREMRVRFAVDMN
Sbjct: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMN 180

Query: 181 SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRA 240
            K RNLNNL+SSPKKNIIYESPYKVYVGNLSWDV+PGDLRNLFSRFGTVVSAKVLNDRRA
Sbjct: 181 PKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVVSAKVLNDRRA 240

Query: 241 GKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           GKSRVYGFLSFSSAAERDASISLDGTE+N RKLVVREG ERSES
Sbjct: 241 GKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

[Close]

BLAST of Cucsat.G1453.T12 vs. NCBI nr
Match: XP_038906862.1 (28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida] >XP_038906863.1 28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 519 bits (1336), Expect = 1.23e-184
Identity = 266/292 (91.10%), Postives = 276/292 (94.52%), Query Frame = 0


Query: 1   MANLATSLTFSSSSS--------PSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLR 60
           MANLATSLTFSSSSS        PSLWILKHKSP+YC+FK+LHSF SS HFD+TKLVSLR
Sbjct: 1   MANLATSLTFSSSSSSSSSSSSPPSLWILKHKSPNYCSFKRLHSFPSSNHFDFTKLVSLR 60

Query: 61  HNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCD 120
           HNHG RFPVLFTVL+NESALTEE I EGDVKSEGS+SNQEVKK ARPCELYVCNLPRSCD
Sbjct: 61  HNHGARFPVLFTVLENESALTEEVIAEGDVKSEGSVSNQEVKKQARPCELYVCNLPRSCD 120

Query: 121 IAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMR 180
           IAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGREMR
Sbjct: 121 IAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMR 180

Query: 181 VRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSA 240
           VRFAVDMN KKRNLNNLHSSPKKNIIYESPYKVY+GNL+WDVKPGDLRNLFSRFGTVVSA
Sbjct: 181 VRFAVDMNPKKRNLNNLHSSPKKNIIYESPYKVYIGNLAWDVKPGDLRNLFSRFGTVVSA 240

Query: 241 KVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           KVLNDRRAGKSRVYGFLSFSSAAERDA+ISLDGTEYNNRKLVVREGLER+ES
Sbjct: 241 KVLNDRRAGKSRVYGFLSFSSAAERDAAISLDGTEYNNRKLVVREGLERNES 292

[Close]

BLAST of Cucsat.G1453.T12 vs. NCBI nr
Match: XP_022156980.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 435 bits (1119), Expect = 2.54e-151
Identity = 233/309 (75.40%), Postives = 253/309 (81.88%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSL----WILKHKSPSYCTFKQLHSFHSSFHFDYTKL-------- 60
           MAN AT LT SSSSS S     WIL+     +CT KQLHS  SS HF Y+KL        
Sbjct: 1   MANAATCLTSSSSSSSSYSSSPWILQQNPRKHCTLKQLHSLPSSIHFRYSKLSRLVFVAP 60

Query: 61  -------------VSLRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKK 120
                         SL HN   RF VL  +LD ESA+TEEAI E DVKSEG+ SNQEVKK
Sbjct: 61  PLPCLSPVSSSPYCSLSHNRRARFSVLLAILDKESAVTEEAIEEDDVKSEGNASNQEVKK 120

Query: 121 LARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180
            A+PCELYVCNLPR+CDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAK
Sbjct: 121 QAQPCELYVCNLPRNCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180

Query: 181 VSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVK 240
           VSI ALDGSDVGGREMRVRFAVDM+ KKRN+ NL+SSPKKNIIYESPYKVYVGNL+WDVK
Sbjct: 181 VSIAALDGSDVGGREMRVRFAVDMSPKKRNIENLNSSPKKNIIYESPYKVYVGNLAWDVK 240

Query: 241 PGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVV 284
           PGDLR+LFS+FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER+A+ISLDGTE+NNRKL+V
Sbjct: 241 PGDLRSLFSQFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAEREAAISLDGTEFNNRKLLV 300

[Close]

BLAST of Cucsat.G1453.T12 vs. NCBI nr
Match: KAG7025359.1 (hypothetical protein SDJN02_11854 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420 bits (1079), Expect = 2.60e-145
Identity = 226/305 (74.10%), Postives = 247/305 (80.98%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL--------- 60
           MAN A+ L+ SS SS S  IL  K  +    KQLHS  SS HFD+ KL  L         
Sbjct: 1   MANAASCLSSSSLSSSSR-ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPSMPC 60

Query: 61  ------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARP 120
                       RHNHG RFPVLFTVLD E+A+T E I E  VKSE S+SNQEVK LARP
Sbjct: 61  VSSSSSCSPRFLRHNHGARFPVLFTVLDQEAAVTAEVIEEDGVKSEDSVSNQEVKNLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180

Query: 181 ALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDL 240
           ALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP DL
Sbjct: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240

Query: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGL 284
           RNLF +FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+EGL
Sbjct: 241 RNLFGQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL
Match: A0A0A0KAH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095890 PE=4 SV=1)

HSP 1 Score: 552 bits (1423), Expect = 2.61e-198
Identity = 284/286 (99.30%), Postives = 284/286 (99.30%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPS--LWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER 60
           MANLATSLTFSSSSSPS  LWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER
Sbjct: 1   MANLATSLTFSSSSSPSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGER 60

Query: 61  FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE 120
           FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE
Sbjct: 61  FPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVE 120

Query: 121 MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD 180
           MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD
Sbjct: 121 MFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVD 180

Query: 181 MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR 240
           MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR
Sbjct: 181 MNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDR 240

Query: 241 RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES
Sbjct: 241 RAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 286

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL
Match: A0A1S3CB56 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 PE=4 SV=1)

HSP 1 Score: 533 bits (1374), Expect = 7.15e-191
Identity = 272/284 (95.77%), Postives = 277/284 (97.54%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFP 60
           MANLATSLTFSSSSSPSLWILKHKSP+YCTFKQLHSF SSFHFDYTKLVSLRHNHGERFP
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVSLRHNHGERFP 60

Query: 61  VLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120
           VLFTVLDNESALTEEAIVEGDVKSE S+SNQEVKKLARPCELYVCNLPRSCDIAELVEMF
Sbjct: 61  VLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120

Query: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMN 180
           KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGREMRVRFAVDMN
Sbjct: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMN 180

Query: 181 SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRA 240
            K RNLNNL+SSPKKNIIYESPYKVYVGNLSWDV+PGDLRNLFSRFGTVVSAKVLNDRRA
Sbjct: 181 PKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVVSAKVLNDRRA 240

Query: 241 GKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           GKSRVYGFLSFSSAAERDASISLDGTE+N RKLVVREG ERSES
Sbjct: 241 GKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL
Match: A0A5D3DM74 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002470 PE=4 SV=1)

HSP 1 Score: 533 bits (1374), Expect = 7.15e-191
Identity = 272/284 (95.77%), Postives = 277/284 (97.54%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSLRHNHGERFP 60
           MANLATSLTFSSSSSPSLWILKHKSP+YCTFKQLHSF SSFHFDYTKLVSLRHNHGERFP
Sbjct: 1   MANLATSLTFSSSSSPSLWILKHKSPNYCTFKQLHSFPSSFHFDYTKLVSLRHNHGERFP 60

Query: 61  VLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120
           VLFTVLDNESALTEEAIVEGDVKSE S+SNQEVKKLARPCELYVCNLPRSCDIAELVEMF
Sbjct: 61  VLFTVLDNESALTEEAIVEGDVKSESSVSNQEVKKLARPCELYVCNLPRSCDIAELVEMF 120

Query: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMN 180
           KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSI ALDGSDVGGREMRVRFAVDMN
Sbjct: 121 KPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIAALDGSDVGGREMRVRFAVDMN 180

Query: 181 SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRA 240
            K RNLNNL+SSPKKNIIYESPYKVYVGNLSWDV+PGDLRNLFSRFGTVVSAKVLNDRRA
Sbjct: 181 PKNRNLNNLNSSPKKNIIYESPYKVYVGNLSWDVQPGDLRNLFSRFGTVVSAKVLNDRRA 240

Query: 241 GKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 284
           GKSRVYGFLSFSSAAERDASISLDGTE+N RKLVVREG ERSES
Sbjct: 241 GKSRVYGFLSFSSAAERDASISLDGTEFNKRKLVVREGFERSES 284

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL
Match: A0A6J1DRW5 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023809 PE=4 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 1.23e-151
Identity = 233/309 (75.40%), Postives = 253/309 (81.88%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSL----WILKHKSPSYCTFKQLHSFHSSFHFDYTKL-------- 60
           MAN AT LT SSSSS S     WIL+     +CT KQLHS  SS HF Y+KL        
Sbjct: 1   MANAATCLTSSSSSSSSYSSSPWILQQNPRKHCTLKQLHSLPSSIHFRYSKLSRLVFVAP 60

Query: 61  -------------VSLRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKK 120
                         SL HN   RF VL  +LD ESA+TEEAI E DVKSEG+ SNQEVKK
Sbjct: 61  PLPCLSPVSSSPYCSLSHNRRARFSVLLAILDKESAVTEEAIEEDDVKSEGNASNQEVKK 120

Query: 121 LARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180
            A+PCELYVCNLPR+CDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAK
Sbjct: 121 QAQPCELYVCNLPRNCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAK 180

Query: 181 VSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVK 240
           VSI ALDGSDVGGREMRVRFAVDM+ KKRN+ NL+SSPKKNIIYESPYKVYVGNL+WDVK
Sbjct: 181 VSIAALDGSDVGGREMRVRFAVDMSPKKRNIENLNSSPKKNIIYESPYKVYVGNLAWDVK 240

Query: 241 PGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVV 284
           PGDLR+LFS+FGTVVSAKVLNDRRAGKSRVYGFLSFSSAAER+A+ISLDGTE+NNRKL+V
Sbjct: 241 PGDLRSLFSQFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAEREAAISLDGTEFNNRKLLV 300

[Close]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL
Match: A0A6J1H6A5 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111460593 PE=4 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 3.60e-145
Identity = 225/305 (73.77%), Postives = 247/305 (80.98%), Query Frame = 0


Query: 1   MANLATSLTFSSSSSPSLWILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL--------- 60
           MAN A+ L+ SS SS S  IL  K  +    KQLHS  SS HFD+ KL  L         
Sbjct: 1   MANAASCLSSSSLSSSSR-ILGQKFHNCFPLKQLHSLPSSIHFDHWKLSRLVFVAPPMPC 60

Query: 61  ------------RHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSNQEVKKLARP 120
                       RH HG RFPV+FTVLD E+A+T E I E  VKSE S+SNQEVK LARP
Sbjct: 61  VSSSSSCSPRFLRHKHGARFPVIFTVLDQEAAITAEVIEEDGVKSEDSVSNQEVKNLARP 120

Query: 121 CELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180
           CELYVCNLPRSCDIAELVEMFKP+GTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT
Sbjct: 121 CELYVCNLPRSCDIAELVEMFKPFGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSIT 180

Query: 181 ALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDL 240
           ALD SDVGGREMRVRFAVDMN K RN NNLHSSP+KNIIYESPYK+Y+GNL+WDVKP DL
Sbjct: 181 ALDCSDVGGREMRVRFAVDMNPKMRNRNNLHSSPRKNIIYESPYKIYIGNLAWDVKPEDL 240

Query: 241 RNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGL 284
           RNLFS+FGTVVSAK+LNDRRAGKSR+YGFLSFSSAAERDA+ISL+GTE+ NRKL+V+EGL
Sbjct: 241 RNLFSQFGTVVSAKILNDRRAGKSRLYGFLSFSSAAERDAAISLNGTEFKNRKLIVKEGL 300

[Close]

BLAST of Cucsat.G1453.T12 vs. TAIR 10
Match: AT1G01080.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 7.7e-70
Identity = 147/290 (50.69%), Postives = 204/290 (70.34%), Query Frame = 0


Query: 11  SSSSSPSLWILKHK----SPSYCTFKQLH-SFHSSFHFDYTKL--------VSLRHNHGE 70
           SSS S    I K+K    S SY   + L   F SS  F ++ L        + ++ +  E
Sbjct: 12  SSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSRPFVAQPLQIKVSSSE 71

Query: 71  RFPVLFTVLDNESALTEEAIVEGDVK--SEGSLSNQEVKKLARPCELYVCNLPRSCDIAE 130
                 +VLD E    EE +V+G+ +   +  +S  E  K  RPCELYVCN+PRS DIA+
Sbjct: 72  -----LSVLDEEK---EEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQ 131

Query: 131 LVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRF 190
           L++MF+P+GTV++ EVSRNP+TG S+G GYVTMGSINSAK++I +LDG++VGGREMRVR+
Sbjct: 132 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 191

Query: 191 AVDMN-SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKV 250
           +VDMN   +RN   L+S+PKK ++YES +KVYVGNL W  +P  LRN FS+FGT+VS +V
Sbjct: 192 SVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRV 251

Query: 251 LNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 285
           L+DR+ G++RV+ FLSF+S  ERDA++S +GT+Y  R+++VREG+E+SES
Sbjct: 252 LHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 293

[Close]

BLAST of Cucsat.G1453.T12 vs. TAIR 10
Match: AT1G01080.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-68
Identity = 147/291 (50.52%), Postives = 204/291 (70.10%), Query Frame = 0


Query: 11  SSSSSPSLWILKHK----SPSYCTFKQLH-SFHSSFHFDYTKL--------VSLRHNHGE 70
           SSS S    I K+K    S SY   + L   F SS  F ++ L        + ++ +  E
Sbjct: 12  SSSRSSHNAIPKYKTLISSSSYSYLESLKLQFSSSNSFHHSSLSRPFVAQPLQIKVSSSE 71

Query: 71  RFPVLFTVLDNESALTEEAIVEGDVK--SEGSLSNQEVKKLARPCELYVCNLPRSCDIAE 130
                 +VLD E    EE +V+G+ +   +  +S  E  K  RPCELYVCN+PRS DIA+
Sbjct: 72  -----LSVLDEEK---EEEVVKGEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQ 131

Query: 131 LVEMFKPYGTVLAAE-VSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVR 190
           L++MF+P+GTV++ E VSRNP+TG S+G GYVTMGSINSAK++I +LDG++VGGREMRVR
Sbjct: 132 LLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 191

Query: 191 FAVDMN-SKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAK 250
           ++VDMN   +RN   L+S+PKK ++YES +KVYVGNL W  +P  LRN FS+FGT+VS +
Sbjct: 192 YSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTR 251

Query: 251 VLNDRRAGKSRVYGFLSFSSAAERDASISLDGTEYNNRKLVVREGLERSES 285
           VL+DR+ G++RV+ FLSF+S  ERDA++S +GT+Y  R+++VREG+E+SES
Sbjct: 252 VLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSES 294

[Close]

BLAST of Cucsat.G1453.T12 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-27
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 0


Query: 68  NESALTEEAIVEGDVKSEGSLSNQ-EVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTV 127
           +E  ++E    EGDV SEG++S + E  + +   +L+V NL    +   L  +F+  GTV
Sbjct: 118 SEGDVSEGDESEGDV-SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTV 177

Query: 128 LAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNL 187
             AEV  N ET  S+G G+VTM S++ A+ ++   +  D+ GR + V  A    S+    
Sbjct: 178 EIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER- 237

Query: 188 NNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVY 247
                +P+   +YE  ++VYVGNL WDV  G L  LFS  G VV A+V+ DR  G+SR +
Sbjct: 238 -----APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 297

Query: 248 GFLSFSSAAERDASIS-LDGTEYNNRKLVVREGLER 282
           GF++ S   E + +IS LDG     R + V    ER
Sbjct: 298 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323

[Close]

BLAST of Cucsat.G1453.T12 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-25
Identity = 64/183 (34.97%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 101 ELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITA 160
           +L+V NLP   D   L  +F+  GTV  +EV  N +T  S+G G+VTM ++  A+ ++  
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173

Query: 161 LDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLR 220
            +  +V GR + V  A    S+           ++  +Y++ +++YVGNL WDV  G L 
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPE---------RQPRVYDAAFRIYVGNLPWDVDSGRLE 233

Query: 221 NLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASI-SLDGTEYNNRKLVVREGL 280
            LFS  G VV A+V++DR  G+SR +GF+  S+  E + +I +LDG     R + V    
Sbjct: 234 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 287

Query: 281 ERS 283
           ER+
Sbjct: 294 ERT 287

[Close]

BLAST of Cucsat.G1453.T12 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 110.2 bits (274), Expect = 2.8e-24
Identity = 84/282 (29.79%), Postives = 137/282 (48.58%), Query Frame = 0


Query: 27  SYCTFKQLHSFHSSFHFDYT------KLVS------LRHNHGERFPVLFTVLDNESALTE 86
           S  TF  L S HS+    Y       KLV+      + H++  R    F   + E++  +
Sbjct: 20  SAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLILHSNIRRHR-FFCAAETEASSAD 79

Query: 87  EAI-----VEGDVKSEGSLSNQEVKKLARPCE-------LYVCNLPRSCDIAELVEMFKP 146
           + I      E +V+ EG    +EV++  +  +       LYV NLP +   +EL ++F  
Sbjct: 80  DEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGE 139

Query: 147 YGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSK 206
            GTV+  ++  +  T  S+G G+VTMGSI  AK ++   + S +GGR ++V F       
Sbjct: 140 AGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGG 199

Query: 207 KRNLNNLHSSPKKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGK 266
           +  +             +SP+KVY GNL W++    L++ F     V+ AKV+ +R  G+
Sbjct: 200 ENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGR 259

Query: 267 SRVYGFLSFSSAAE-RDASISLDGTEYNNRKLVVREGLERSE 284
           SR +GF+SF SA   + A  +++G E   R L +    ER +
Sbjct: 260 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300

The following BLAST results are available for this feature:

BLAST of Cucsat.G1453.T12 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	5.1e-26	37.04	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P28644	5.1e-26	35.59	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q08935	2.1e-24	36.46	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9FGS0	6.2e-24	34.97	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P19682	6.2e-24	32.31	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of Cucsat.G1453.T12 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140529.1	5.40e-198	99.30	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >XP_011656820.1 28 kDa...	[more]
XP_008459818.1	1.48e-190	95.77	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >XP_008459819....	[more]
XP_038906862.1	1.23e-184	91.10	28 kDa ribonucleoprotein, chloroplastic [Benincasa hispida] >XP_038906863.1 28 k...	[more]
XP_022156980.1	2.54e-151	75.40	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
KAG7025359.1	2.60e-145	74.10	hypothetical protein SDJN02_11854 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Cucsat.G1453.T12 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAH9	2.61e-198	99.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095890 PE=4 SV=1	[more]
A0A1S3CB56	7.15e-191	95.77	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498833 ...	[more]
A0A5D3DM74	7.15e-191	95.77	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1DRW5	1.23e-151	75.40	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1H6A5	3.60e-145	73.77	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Cucsat.G1453.T12 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01080.1	7.7e-70	50.69	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G01080.2	1.9e-68	50.52	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G24770.1	3.6e-27	37.04	31-kDa RNA binding protein	[more]
AT5G50250.1	4.4e-25	34.97	chloroplast RNA-binding protein 31B	[more]
AT3G52380.1	2.8e-24	29.79	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 204..276 e-value: 3.2E-20 score: 83.2 coord: 101..174 e-value: 7.3E-19 score: 78.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 205..273 e-value: 2.9E-15 score: 55.9 coord: 102..172 e-value: 6.8E-14 score: 51.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..178 score: 15.255088
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 203..280 score: 16.534245
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 188..283 e-value: 3.5E-20 score: 74.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..187 e-value: 2.2E-22 score: 81.7
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 6..283
None	No IPR available	PANTHER	PTHR48025:SF7	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..283
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 99..187
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 196..281

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1453	Cucsat.G1453	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1453.T12.E1	Cucsat.G1453.T12.E1	exon
Cucsat.G1453.T12.E2	Cucsat.G1453.T12.E2	exon
Cucsat.G1453.T12.E3	Cucsat.G1453.T12.E3	exon
Cucsat.G1453.T12.E4	Cucsat.G1453.T12.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1453.T12.C1	Cucsat.G1453.T12.C1	CDS
Cucsat.G1453.T12.C2	Cucsat.G1453.T12.C2	CDS
Cucsat.G1453.T12.C3	Cucsat.G1453.T12.C3	CDS
Cucsat.G1453.T12.C4	Cucsat.G1453.T12.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1453.T12	Cucsat.G1453.T12-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
biological_process	GO:0015031	protein transport
biological_process	GO:0060628	regulation of ER to Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0070939	Dsl1/NZR complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding