Cucsat.G14323.T22 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G14323.T22
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	polyadenylate-binding protein RBP45-like
Location	ctg1869: 5915251 .. 5926042 (-)
RNA-Seq Expression	Cucsat.G14323.T22
Synteny	Cucsat.G14323.T22

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAAAAACGATAAATCTAATCGATTCCTACCGATCCCATTCCTTTTGCTTTCCTCCCTTTTCGCCTCCTTCTCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCGAACGACACACCCACCACTCTCTTTTTCTTTCTCCGTCTCCCCATCCTAAGGAGATTTGTTTTTCTTTTCTCCCCTTCTCCATAACGATGCAGCCTGCTCCTGGTGTTGCTCCTCACAACATTCCTCACCAGGCTCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCAGCCTCAGCCCCCGCAAGCACAGCCTGTTCCTCAGATGTGGCCTCAACAGCCGCAGGCTGGTTCTCCACAGGGCCAACCCCCTCAACCTGCCAACGGGGATGAGGTTCGTACGCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTACGTCAGTCAACGCCACCCATTTTTAGATCTTTTGTGTATATGTCTTTATTATTTGTTTTCATTGCTGTTGTTGGGAAAAGATTTGGTTTTATAATTATTAGGTTGAGTTCTTGAAGATTTGTGCCCACACATGTTACTGCATTGTGATTTCGGTGGACAAGAATCGTTTCCATTTCTTCTTTCTTCTTTCTTGTTTATAATTGATGTTGTTTATATCTGCAGGTTTCCTCCGTGAAAGTGATTCGGAATAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCGGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCACAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGATTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGGTATAACTCAGTTAAGGGTGCTAAAGTTGTGATCGATAGGCTCACTGGACGTACTAAGGGTTACGGTTTCGTAAAGTTTGGGGATGAGTCTGAACAAATTCGGGCTATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCAGTCAGCAGTTTTCGAAAAGTAAATACGAACTCCCCCCCCCCGAAACTGGAAAATTTTAAATGAAAAACAAGGCATTGAATTTTGTTTGGAATATCTTCTCAGTCATTCATTCATCATATGGATGTGCCCATTTGTGCTTACTGATTAGTGTTTTTCGATTCATTTTGCTTTCAATATGGCAAGATGCAATGCAACTTCTATTTTCTGTCCTGATTTAGCTCCTCTCCGTTACTTCTATTTCTAGTTTCCAGCATTTTAATTCCCCTCTCGTATACCTTGGAAGAATAGCCTTTCATGCCTTTTCCTTCGTGTACTTCCAATTCGAGCTTTGGTCATTTTAAGTACTATAAAGAAGAATTAATAAACTTATAAAACTCCTCTTTTCTTTAAGCAGGGTGTCAAAAGGCTCTGTCAGCTTGGGGTCCGCTACTGATTTCAGCTGACACGCTTACCCTTTAATACGTTGTTCCATTTAGGTCAGTTTTTTTTCCGCCAATGTCTTACCTCTTTCTTTTTATGTGGCATATTTATGCTGCGGTTTTTAATTCACCTTTAGTTCTGCAACGTTTAGTTTTTCCTTTGATTTGCATGGGTATTTTTTTCTCTCCCTGGCATTTTACCACTTCTAATTCCTTTATTTTTCTTTAAAGTTTAGGTCACTTGTCTTAGGTTCTTTAGCTAGATGGTTTTTTTAAATTTCCAGCAACTGGGAATTTGGAGTAACATAGTTTGGTTCTGAACTTTCCTTCTACAACTGCAGTAGGTCATATAGGTTGAGCTTGTCCTTCACCTCCTAATATTTTGGGTTTATGGGATTTACTCTATGTTTTATTTTCAATATTTGATGGTTGGATTCCCTTTTTGTAGACAAATCATCTATCAACAAAAGGTTTTGATACATTTCTTGATCTGCCTGAATTTTCATTTCTTACTAGCTTTTCATTCTGTAGCTCTGTATTTCGTTAAGTCTTTCCTTTGGAATATTCTATTCTTCTTCCATCGCGGTGGGTCTATTTTCATCCAAGTATGCTCTGTATGTATCTTTCTTGTAGTTAGGATTGTATTGATTGGTTTTGTTGATTTAAAGGCTTCTAGTTTTTTTTTTTTTAATGCTCATACCATTTCTTGGTGTGAATCATTTCATGTGATTGATTGGCTAAATAGTGGTGCGTGGCAGAATTTCCAATACGTCACATTATGGTTGCCTCAAGTCAGAAGTTGAAGAGGCTATATGTTTTATTTTAGTTCATTAGATCAGAATTTCTCGTGTATTATTATGTAGGCTTTTTCACAATTAATCTGGTCTCCATGATGAATCACTTGGTTATTTTGCATTTATTATGTTTGGCACAGTATCTTTTATTCTTCATATTCCGATCTCCATGTTATTGTTTTTGTATTGATATGAGCTGAAAGCCTTGAAGTTCTTCAAATCTTATGCCTTTTTGAAATTATAGGAGGCTTACATCTTTGAGGTGTAAAATAGGTAAACCTCAGTGAATGATAGAGAAGACAATAATCAAATATGGAAATTTTGAAGAGTTGGAATGTCGACATTATGGTGGCTTCTGTTTGATGGGAATTTTTAGGGGAGAATTAATTATCGATGTGGCACATTGTCTGCATTTTAAGACCATTTCAAGTTATCTTCATTTGAATAAAAAAAAAAATCAGGTCCCATAAGAGTTTAGTCCCCTCCCCCTCCGTAATATATATAATTATAATTATTTCCGTTGTTCGGTATTAGCTATTACAGCCAGGATGTGACTGTTATAATTCTGCATCTATTTAAAGAATGGATGTCTCTTTTCATGGATATTTTGATTGCTAGTCATTTGAATTTATCATGTTTTAGTTTGCATGTATCTTGGTTTTAATTTTCATTACTATTATTTACCATAACGATAATGCAACATGATAATGACTTGGGTAAAAATGATCTAAGGATTTTTTTAGTTCATGTTGATAGAAGATGTCATTTTAGTTTAATATTTTCAAATGCAGCTTCATACCAGAATCCTCCAGGCACACAGAATGAGAACGATCCAAATAATACAACTGTGGGTACTCCAATAATTTTCAATAGCAATATTATCTCATGGACGTATTTATGAGTTATTATTTGATTTTGTTTCAGATATTCGTGGGGAATTTGGATTCTAATGTCACTGATGAGCACTTGAGACAAGTATTCAGTCAGTATGGAGAGCTGGTGCATGTTAAGATTCCTGCAGGCAAACGATGTGGCTTTGTTCAATTTTCAGACAGGTTGGTATTTTCAAAAGCTTTCATGACACCTACGCCCCTTCTTCCCATCATGTGGTGTTCATTTGCTCATGAGTTTTGTATTTTGTTTTCCTTAATACTATTTTAGAAGCTGCGCCGAGGAAGCTTTGCGCATTTTGAATGGAACCCCAATTGGTGGGCAAAACATTAGACTTTCGTGGGGTCGTAGTCCTTCTAACAAACAGGTACTATTATTGTGCTTCACTTGTATTCTTGTATTCATTAAAGCAAATAATATATTAGCTTTATTGACCTCTATTTTAAATTTACAGCCTCAGGCTGATCCTAATCAATGGAATGGAGGAGGAGGTGGAGGAGGAGGATATTATGGATATGGACAAGGATATGAAAATTATAGCTATGCTCCAGCTGCCCAAGACCCTAACATGTTCTACAGTGGCTATGGTGGGTATGGGAACTACCAGCAACCAGCAACACAGCAGCCATCACAGCAACAAGGTGGATATATGTAGATGACAAGTTCTATTTCTCTTGCCTCACCTCTCAATTCGAATGAGACCCTAAACTTCTGCTTGTCATTTGTAGAAGATTTTGGAGATGTTACTCTCTCATCTATTCTAAACAAATATTCTGTATGACTCCGTTGACTTGATGTCAGTTGTGTGTTGTATTTGGCGTTAGAGGTTTTTGCGTGTTGTGTTATTTGTTTCTTTTCATATGATCATATCTATTATGGTAGGAGTTGAATGATCTTGTAATTTTCTCAAGTCCTTGTTAAAGGCTGTACGTGGGTTAACTACTTACTACTTATGTTCTTGCTGATGTTTCTCTACCCTATTTCACTTTTTCTGGCTTGAAACTGTTTGTTATGTTTTTTCATAGTATTACTGTACAATGGGAATTGTCGTCGAACCATTGAGACGTTTGGTTTCTGAAATTGTTCAACTTTTGCTTGTACAATATTGAAGGTGTATTCATTGTTTAATTAAAATCGGTTAGCCATTACTAGATTAATTCCAAATTTCTTAATCCTATTATGCGCCTTATGCAACAGTTCATTAATAGATTAATTCCAACTTGCTAGATTCAATTTTGTGCCTTATACGAGTTTATAAACACAAGTTCGCTTAAGTTTAAATTTCATCCTTAAATAAATACATAAATGGATTTGGACTAATGTTGCGAATTGAATTCTTTTCTGGACTAATGCCAAAGATACAATGTCTAAAATCTTCCAAAAGTGATCAGTCTTAATGAAAATGGAACTTTCATGTGAAGTATTGGCTCTTCATTCAAATCTCTTCACCTCCAAAGAGAGAAAATATATTTTCCAGACATTGTGGGAGATTGGAATAAGTTAGCTTATAATACTGAATTTAATAGGAAGACCTAATATTGGTGTGTGGTTGGTACTGTTTGGACTTCATGTGCTTGGTTTTGAATTAGTATTTGTGGCTTGAGTTGTGTTGTATGCTTATTCATTTATTGGGTTGTAGATTTCTTCAAACTAAATAATTTTAGTTAAAAATTCCAACAAAATTCAACCATGAAATATTTGACTTGACTCAATTCGAGTTACTCGAGCAAAAAGTAAAATTTAGTAGGTGGTTTTCTTATTTAATTATTTTTATATATTAAAATAAGACATGTTTTACTCATGTTCAACGAATAATGAATCAACGGTGATCTAAAAAGGATTCATGTGATTATGTTTAGTGTTGTTTAATTATGTTATAATACAAGGAGAGCACATGTCTAAATAAGTTGTCATCCTATTGATAAACACTAATGCTACCATTATCGTTTGTGATTATCATCATTGTCACTCTTTTATAGAAAAAACTATGGGTTAACACGAGATTTTGACCAAATAAATTTTATTTGTGAAAATGCAAATATTACAATATTTAATTTTTACCGTCTAGTATGTTCTCTTAAATATATAAAATTCAATTTTTAAGTTTGTTGATCTTCTTCTATTATGAGTCGTTGGACCTGTTGATCTTTTTTAGGATCAATCTTCAACTTGTAGATGGTGAAAAAACGATTAATTTGATGAAGTCTTCAAAATTTTCAGAATATCAGTCTTCAGTTTTTATATGATGAAAAGTCGATCAATTAGTCGAAGTTTTCAAACATTTGAAAAGTTCATTTTTCAATTTGTAGATGATGCATATACGACAAAGTTGTTGAAGAAAATAAGATATATTCATTTGAAGAATAGATGGTGAACTTGTTGAAAACGAATAAATGATTTGTTCGCTAGAGATGGTCAATCAAATATGAATATGACACATTCTCTTTCTTGAAGAATAGATTCACGATTTGTTGAAGAACAATTTGTGGAATTTTCTTAGATTAATGGATCTATGTCGAATGCCTCAAGTGAAGGATTAGCTACGGTCTATTGACTTGGATTTGGTTCAGTTTCGACCCATCTCTTATATTAAATAGTTAACATGATATAAAGTAATGTATTTGTTGAAGTTTATTAAGTCTAAATAGTAATTTATAACTAATAATTAAAAGTAACAATAATGATTAATGGATATTAACTTGTTAAGTAATCATACTTTCTTCTTTCTTCATTCTCCAGCCAAATCTCATAACAATAAACATATTTTTTGAAAGTTTTAAGAACCTTTTCTAAAACATTTAAAAGTTTATATACATTTTTCTGTGTAGTTTAGAAAAAAAAAAGTATTAAATAAAAAATATGACGATTTTATAGACCGAAAATAGTTTATCTACAAATACGAATGGAAAACCGTTTTCAAAAAATAGAATTCAAGTTTCCAAATATTTTAAAAAGCAGAGTTCAAAATTGAAAAGAAGAAATAGAAAACATAAAACAAAATGACAGATGTATTTAGAAATGTTTAACGATTTGTAGAGAAAAAAAGAAAAACATTTTATTTTCTTTGTTCTAAGTGAATCCAAATGTGAAAGGTTTGGTGAGTTTTTGGGATAAGTAAAAACGTACCAAACAAATTATTTTTATTTTATTTCCTTTTTTAAAACGATAAATGTAATCGATTCCCCCACTGGCCCCCTTCTCTTTGTTTCCTCCCTTTTCGCCCATTATCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCAGACGAGACACTCAAAACTCTCTTCTTCTTTCTCCTTCTTTCCTCACTAAGGAGATTCTCTTATCCCCTTTCTCCATTACCATGCAGCCTGCACCTGGTGTTGCCCCTCACAACATGCCTCACCAGGCCCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCCCCCTCAGCCGCCCCAACCTCAGCCTGTTCCTCAGATGTGGCCTCAGCAGCCACAGGCCGGTTCCCCACAGGGCCAACCCCCTCAGTCTGCCAACGGGGATGAGGTTCGTACCCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTACGTCTAAGAACGCCACCCCACTTTAGATCTTGTGTGTGTGTGTCTTTATTATTTCTTTTTATCGTTGTTGTTGGGAAAAAAAAGATATAGTTTTGTGATTATTAGGTTGATTGCATAAAGATTTGTCTACACACATGTTGGTATATATGAAGCGGTTCCGAAATTTCGTTTTTTTTTTTGCTGTTGAGATTTAACATTGTTTGTCTCTCCAGGTTTCCTCTGTGAAAGTGATTCGGAACAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCAGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCTCAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGACTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGCTATAACTCAGTTAAGGGCGCTAAAGTTGTGATTGATAGGCTCACTGGACGCACTAAGGGTTATGGATTTGTTAAGTTTGGGGACGAGTCTGAACAAATGCGAGCAATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCGGTCAGCAGTTCTCGAAAAGTAAATACGAATTCCTCCCCAAACTGGAACATTTTAAATGAAAGACAGGGCATCAAATTTTGTATGGAATAGCTTGTCCATCATTCATTCATTGTATGGATGTGCCGTTTGTGTTTACTGATTTGTGTTTCTGGATGCATTTTGCTTTCTTATGGCCAGACGCAATTCTTATTTTCTGTCCTGATTTAGCTCCTCTCCGTTACTTTTATTACTAGTTTCTAGCATTTTAATTCCCCTCTCGTATACCTTGGAAGAATAGTAGCCTTTCATGCCTTTCCATCGTGTACTTCCAATTCGAGCTTTGGTCATTTTAAGTACTATAAAGAAGAATTAATAAACTTATAAAACTCCTCTTTTCTTTAAGCAGGGTGTCAAAAGGCTCTGTCAGCTTGGGGTCCGCTACTGATTTCAGCTGACATGCTTACCCTTTAGTACGTTGTTCCATTTAGGTCAGTTTTTTTCCCGCCAATGTCTTACCTCTTTTTTTTTATGTGGCATATTTATGCTACGGTTTTTAATTCACCTTTAGTTCTGCAACGTTTACCTTTTCCTATCATCTGCATGGGTATTTTTTTTGTCTCCCTGGTATTTCAGTCTTAATTCCGTTGGAAGTTTTTATTTTTTCTTTATTAAGTTTAGGGTACGCAGGTTCTTTAGCCAGTTTCATTATTGAAATTTCAGTATGTCTTGCGGCTATTGCTGGCCACTTAGGGTTGTGCTTGTCCTTCTCCTCCTGGCATTTAGGGTTATATGGTTTTACCTTCCTATTGTTTCATTTCAGTATTTGATGATTGGATCTCATTTATGTGTCCAACCCATTACCTGCAAAAGAATTTTGGTCAGCACAAAGTCATGTTTCTTAGTGTTATTAGGGTTCTTAGGAGTCTTATTTCTTACTAGTTTTTTGTTGTGTATCTTGGTATTCATTTTGTCATTCCTTTAGAATATTTCGTTCATCTTCTAAAGTTTTGAATTGGACATAGATATGTTCGGGTATACTTTCTTTGTTCTTTTAAGTAGGATCCTATTAATTGTTTTATTCTGTTCCGTTGTGTGAATCACTTTTATGTGAATGGTTGTGCAAGTTAGGTGCGGTGGATTCTGAGAATGGCATAATATGGTTGTTTGAGTCTGAAGTTAGGTACTCTAGTTGTGATATCTAGTTTTTTATGATGAAAAGCTTTATTATGTCAATTTCTTTTTTAATAATGTGTTTCTCTATGTTTTTCAAATTTACATTCTATGTTGAAATGAGCATGTTTATTTTCTTTTTTTATATTTTGGCCGTATGGTGATCATCATTAGATAATTATGATTGTGCCTTTATGGATTGTCAAAACTTCTATTTGAAATATTGTCTAGTTTTATATTTCTTAGGGCACACGTTGAAATTGGTACTTGTCTTCTAGTTATGCTATTTTGTAACAAATATCGCTCTAATGTATATTTTTCAAATTTCCCAATTTTGTTTGTGAAAATGGACTTCCTATGTACGTAATTTTCTGGATATCTTTTGTAGTTCTTGTTATTTTGGTATTCTTCGTGATTTCTCAATATGAGTACTTCTATGTTGCCCGTTATACCTACTGCCTCTGGTTTTTCCCCCTATAATGAAGCCGACTTTAGGTTGCATCGAACCATTTAAAACAGTGTGACTCTGTAATTCAAAATTTGCTTGTGTTTCAATTTTGTTGTTGGAGTCTTTTTTGAACATGCAACATATGGCATTGAGCCTAGTTCAACAGCCCTCTAAGCCAACCAGCTATGGAATTATTTGGTTGGAGGTTTGATTTGTTATAAGTGGAGCACACAGTGTTTATGCAGGTCTTGTGGATTCTATTTTTTATTTCTCAGTACACATTGCTTATTGCATTGATGTATATTATTTATGCAAGCTTGGACTGTAGCAGAATAATTGATATTGTGTGTTTAACAACTGCTGAACTGGTTGGTTCAAGTTAAAGAGCAAGTTCATTTAGGTTTGATTTTTTACTATTGCAGCTTCATATCAGAATCCTCAAGGGGCTCAGAATGAGAATGATCCAAACAATACGACTGTGGGTTCTTTACCTTATTTTTCCTTCGTCATGTAATTTTATTTGAGTTTTCTAACTTCTGAAATCCTATTGCAGATATTTGTGGGCAATTTGGATGCTAACGTGACAGACGAACACTTGCGACAAGTATTTGGTCAATATGGGGAATTGGTGCATGTAAAGATACCTGTAGGCAAACGATGTGGTTTCGTTCAATTTGCTGACAGGTTTGTATTTTGTTTCTTTTAAAAATATGAAACAGCTTGGTAGTTCTAACAAATGTAACCTAACATCTTAATCTCTCCTGAATTGGCTTGGACACATTTGATGGTTATTTCAATTTTGTTTTTAGGAACTGTGCTGAGGAAGCGCTACGTGTGTTGAATGGAACACAAATTGGTGGACAGAACATTAGACTCTCATGGGGACGTAGTCCTTCAAATAAACAGGTTGTGGTATTGTACTCTTTGTGTCCGTTGATGGTTATTGATTATAGTTCTTTCCGAATGTTCATTATTTTCTCATCTTTTTAGCCACAGGCGGACCCTAACCAATGGAATGGAGGTGGCTATTACGGATATGGACAAGGATACGAAAACTATAGCTATGCCCCAGCTCCTCAGGACCCTAATATGTTCTACAGTGGCTATGGTGGGTATGGAAATTACCAGCAGCCTCCCCCACAACAACCGCAGCAGCAGCAGCAAGGAGGATACATGTAGATTTGAAGTTTTGTTTACTCTGCCGTGGCCGCTCCCCTACCGAATCTCCCGGGGATATGATGGTTAAAGATTTTGGCAAAGTTATTTCACCCTCCCATTACATCCATTCTGAAGAACTCATCCTTTTCCTATTTTCTGTTCTACCTAAACTCTTTGATGACATGAGACATCTTTTCTTTTTTATTTATTATTATGTTATCCCGCAGAAGTTTTATTACGACTCTGTGTCGTTTATTTTCTATCACTACATTTTTGGTCTTTTGATGAGAGAGAATCTGGAGGCTTTTTGCCTTTGCTTATGAGTATTGCATTTTATACTGATTTAAACACTGACAAGTAATTCATCCCTAGCAAATTTATGGCCGCTGTGGGGTTGTGTTTTGTTTTTGTTTTTTCCGTTTCTGTTTTCTTCAGTACTTGTGAAAATTGTGCTACAACTATATTGTCCTATTTTATTGAATTGTATGGCTGTGGTATGAACACTT

Coding sequence (CDS)

AGAAAAAAAACGATAAATCTAATCGATTCCTACCGATCCCATTCCTTTTGCTTTCCTCCCTTTTCGCCTCCTTCTCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCGAACGACACACCCACCACTCTCTTTTTCTTTCTCCGTCTCCCCATCCTAAGGAGATTTGTTTTTCTTTTCTCCCCTTCTCCATAACGATGCAGCCTGCTCCTGGTGTTGCTCCTCACAACATTCCTCACCAGGCTCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCAGCCTCAGCCCCCGCAAGCACAGCCTGTTCCTCAGATGTGGCCTCAACAGCCGCAGGCTGGTTCTCCACAGGGCCAACCCCCTCAACCTGCCAACGGGGATGAGGTTCGTACGCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTTTCCTCCGTGAAAGTGATTCGGAATAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCGGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCACAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGATTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGGTATAACTCAGTTAAGGGTGCTAAAGTTGTGATCGATAGGCTCACTGGACGTACTAAGGGTTACGGTTTCGTAAAGTTTGGGGATGAGTCTGAACAAATTCGGGCTATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCAGTCAGCAGTTTTCGAAAAGGTGTCAAAAGGCTCTGTCAGCTTGGGGTCCGCTACTGATTTCAGCTGACATGCTTACCCTTTAG

Protein sequence

RKKTINLIDSYRSHSFCFPPFSPPSRLLGLGFLSLSERHTHHSLFLSPSPHPKEICFSFLPFSITMQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTSGSQQFSKRCQKALSAWGPLLISADMLTL

Homology

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BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot
Match: Q0J9Y2 (RNA-binding protein L OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-L PE=1 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.9e-81
Identity = 166/253 (65.61%), Postives = 189/253 (74.70%), Query Frame = 0


Query: 72  VAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQP-PQPANGDEV 131
           + P   PHQ      QQPP M  QP PPQA    Q+ P QP   +P  Q  P PA  DEV
Sbjct: 32  IPPPMPPHQYGAPPPQQPPAMWGQP-PPQAH-YGQVPPPQPYYAAPPPQAMPAPAAADEV 91

Query: 132 RTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQ 191
           +TLWIGDLQ WMDE+YI+NCFA TGEV SVK+IR+KQ+GQ +GYGF+EF +R AA+R+LQ
Sbjct: 92  KTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQ 151

Query: 192 TYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVK 251
           TYNG  MPN    FRLNWASAGEKR DD+PDYTIFVGDLA DVTDY+LQETFR  Y SVK
Sbjct: 152 TYNGQMMPNVEMVFRLNWASAGEKR-DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVK 211

Query: 252 GAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTSGSQQF 311
           GAKVV D++T R+KGYGFVKFGD +EQ RAMTEMNG+ CSSRPMRIGPAANK T+G Q+ 
Sbjct: 212 GAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQER 271

Query: 312 SKRCQKALSAWGP 324
               Q A S   P
Sbjct: 272 VPNAQGAQSENDP 281

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot
Match: Q9LEB4 (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP45 PE=1 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 4.2e-80
Identity = 170/266 (63.91%), Postives = 195/266 (73.31%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAP------QYQQQQPP------YMM--MQPQPPQAQPVPQ-MWPQ 125
           M P  GVA    P  AP      QYQQQ PP      +MM   QPQ PQ QP  Q  W Q
Sbjct: 1   MMPQSGVAQ---PPMAPMSMDQHQYQQQAPPPTQQQQWMMPPQQPQQPQFQPQSQPAWAQ 60

Query: 126 QP---QAGSPQGQPPQPA---NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIR 185
           QP   Q G+     P P+   N +EVR+LWIGDLQYWMDENY+  CF HTGE+ S KVIR
Sbjct: 61  QPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIR 120

Query: 186 NKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGE-KRQDDSPDYT 245
           NKQTGQSEGYGF+EF +  AAE +LQTYNGT MPN  QNFR+NWAS G  +R+DDS ++T
Sbjct: 121 NKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT 180

Query: 246 IFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTE 305
           IFVGDLA DVTDY+LQETF++ Y+SV+GAKVV DR+TGR+KGYGFVKF DESEQ+RAMTE
Sbjct: 181 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 240

Query: 306 MNGVHCSSRPMRIGPAANKNTSGSQQ 310
           MNGV CS+RPMRIGPAANK   G+ Q
Sbjct: 241 MNGVLCSTRPMRIGPAANKKPVGTPQ 263

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot
Match: Q9SAB3 (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B PE=1 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 7.9e-79
Identity = 166/255 (65.10%), Postives = 187/255 (73.33%), Query Frame = 0


Query: 67  QPAP-GVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 126
           QP P G+ PH+ P   P   QQQ  Y         A P PQMW   PQA +P     QP 
Sbjct: 4   QPPPGGILPHHAP---PPSAQQQYGYQQPYGIAGAAPPPPQMW--NPQAAAPPS--VQPT 63

Query: 127 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 186
             DE+RTLWIGDLQYWMDEN+++ CFAHTGE+ S KVIRNKQTGQ EGYGFIEF +  AA
Sbjct: 64  TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 123

Query: 187 ERVLQTYNGTAMPN-GAQNFRLNWA--SAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETF 246
           ERVLQT+N   +P+   Q FRLNWA  S+G+KR DDSPDYTIFVGDLA DVTDY+L ETF
Sbjct: 124 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR-DDSPDYTIFVGDLAADVTDYILLETF 183

Query: 247 RARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANK 306
           RA Y SVKGAKVVIDR+TGRTKGYGFV+F DESEQIRAMTEMNGV CS+RPMRIGPAA+K
Sbjct: 184 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 243

Query: 307 NTSGSQQFSKRCQKA 318
                Q+ S +   A
Sbjct: 244 KGVTGQRDSYQSSAA 250

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot
Match: Q93W34 (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana OX=3702 GN=RBP45C PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.5e-72
Identity = 151/251 (60.16%), Postives = 173/251 (68.92%), Query Frame = 0


Query: 67  QPAP-----GVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQ--PQAGSPQ- 126
           QP P        P  IP     Y QQQ  +MM   Q  Q QP P  W QQ  P +G PQ 
Sbjct: 4   QPPPASNGAATGPGQIPSDQQAYLQQQQSWMMQHQQQQQGQP-PAGWNQQSAPSSGQPQQ 63

Query: 127 -----GQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEG 186
                G    P +  E+R+LWIGDLQ WMDENY+ N F  TGE ++ KVIRNKQ G SEG
Sbjct: 64  QQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEG 123

Query: 187 YGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWA--SAGEKRQDDSPDYTIFVGDLAG 246
           YGFIEF+    AER LQTYNG  MP+  Q FRLNWA   AGE+RQ + P++T+FVGDLA 
Sbjct: 124 YGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAP 183

Query: 247 DVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSS 303
           DVTD++L ETF+A Y+SVKGAKVV DR TGR+KGYGFV+F DESEQIRAMTEMNG +CSS
Sbjct: 184 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSS 243

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot
Match: Q9FPJ8 (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana OX=3702 GN=RBP45A PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.3e-69
Identity = 140/226 (61.95%), Postives = 166/226 (73.45%), Query Frame = 0


Query: 87  QQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQ------PPQPANGDEVRTLWIGDLQY 146
           QQ  +MMMQ Q        Q   Q   + +P GQ         P +  +V++LWIGDLQ 
Sbjct: 18  QQHLWMMMQQQ--------QQQQQMQLSAAPLGQHQYGIGSQNPGSASDVKSLWIGDLQQ 77

Query: 147 WMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNG 206
           WMDENYI + FA +GE +S KVIRNK TGQSEGYGFIEF++   AERVLQTYNG  MP+ 
Sbjct: 78  WMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPST 137

Query: 207 AQNFRLNW--ASAGEKR-QDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVID 266
            Q FRLNW  A AGEKR Q + PD+TIFVGDLA +VTDY+L +TF+  Y SVKGAKVV+D
Sbjct: 138 EQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD 197

Query: 267 RLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKN 304
           R TGR+KGYGFV+F DE+EQ+RAMTEMNG +CS+RPMRIGPAANKN
Sbjct: 198 RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN 235

[Close]

BLAST of Cucsat.G14323.T22 vs. NCBI nr
Match: XP_004145107.1 (polyadenylate-binding protein RBP45 [Cucumis sativus])

HSP 1 Score: 503 bits (1295), Expect = 9.82e-176
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. NCBI nr
Match: XP_008441163.1 (PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis melo] >KAA0056864.1 polyadenylate-binding protein RBP45-like [Cucumis melo var. makuwa] >TYJ99367.1 polyadenylate-binding protein RBP45-like [Cucumis melo var. makuwa])

HSP 1 Score: 502 bits (1292), Expect = 2.71e-175
Identity = 246/247 (99.60%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. NCBI nr
Match: XP_008441150.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X4 [Cucumis melo])

HSP 1 Score: 496 bits (1278), Expect = 3.06e-173
Identity = 243/247 (98.38%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. NCBI nr
Match: XP_008441142.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X3 [Cucumis melo])

HSP 1 Score: 496 bits (1278), Expect = 3.16e-173
Identity = 243/247 (98.38%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. NCBI nr
Match: XP_008441139.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X2 [Cucumis melo])

HSP 1 Score: 496 bits (1278), Expect = 3.28e-173
Identity = 243/247 (98.38%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL
Match: A0A0A0LX40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063550 PE=4 SV=1)

HSP 1 Score: 539 bits (1388), Expect = 8.34e-191
Identity = 268/275 (97.45%), Postives = 270/275 (98.18%), Query Frame = 0


Query: 59  FLPFSITMQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQ 118
           F  FS + +PAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQ
Sbjct: 96  FASFSAS-RPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQ 155

Query: 119 GQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIE 178
           GQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIE
Sbjct: 156 GQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIE 215

Query: 179 FLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVL 238
           FLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVL
Sbjct: 216 FLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVL 275

Query: 239 QETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGP 298
           QETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGP
Sbjct: 276 QETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGP 335

Query: 299 AANKNTSGSQQFSKRCQKALSAWGPLLISADMLTL 333
           AANKNTSGSQQFSKRCQKALSAWGPLLISAD LTL
Sbjct: 336 AANKNTSGSQQFSKRCQKALSAWGPLLISADTLTL 369

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL
Match: A0A5A7UNS2 (Polyadenylate-binding protein RBP45-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005850 PE=4 SV=1)

HSP 1 Score: 502 bits (1292), Expect = 1.31e-175
Identity = 246/247 (99.60%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL
Match: A0A1S3B3F4 (polyadenylate-binding protein RBP45-like OS=Cucumis melo OX=3656 GN=LOC103485380 PE=4 SV=1)

HSP 1 Score: 502 bits (1292), Expect = 1.31e-175
Identity = 246/247 (99.60%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL
Match: A0A1S3B3E5 (polyadenylate-binding protein RBP45-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485366 PE=4 SV=1)

HSP 1 Score: 496 bits (1278), Expect = 1.48e-173
Identity = 243/247 (98.38%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

[Close]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL
Match: A0A1S3B2A3 (polyadenylate-binding protein RBP45-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485366 PE=4 SV=1)

HSP 1 Score: 496 bits (1278), Expect = 1.53e-173
Identity = 243/247 (98.38%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GSQQFSK 312
           GSQQFSK
Sbjct: 241 GSQQFSK 247

The following BLAST results are available for this feature:

BLAST of Cucsat.G14323.T22 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J9Y2	4.9e-81	65.61	RNA-binding protein L OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-L PE=1 SV=...	[more]
Q9LEB4	4.2e-80	63.91	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q9SAB3	7.9e-79	65.10	Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B P...	[more]
Q93W34	5.5e-72	60.16	Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana OX=3702 GN=RBP45C P...	[more]
Q9FPJ8	4.3e-69	61.95	Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana OX=3702 GN=RBP45A P...	[more]

BLAST of Cucsat.G14323.T22 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145107.1	9.82e-176	100.00	polyadenylate-binding protein RBP45 [Cucumis sativus]	[more]
XP_008441163.1	2.71e-175	99.60	PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis melo] >KAA0056864.1...	[more]
XP_008441150.1	3.06e-173	98.38	PREDICTED: polyadenylate-binding protein RBP45-like isoform X4 [Cucumis melo]	[more]
XP_008441142.1	3.16e-173	98.38	PREDICTED: polyadenylate-binding protein RBP45-like isoform X3 [Cucumis melo]	[more]
XP_008441139.1	3.28e-173	98.38	PREDICTED: polyadenylate-binding protein RBP45-like isoform X2 [Cucumis melo]	[more]

BLAST of Cucsat.G14323.T22 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX40	8.34e-191	97.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063550 PE=4 SV=1	[more]
A0A5A7UNS2	1.31e-175	99.60	Polyadenylate-binding protein RBP45-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B3F4	1.31e-175	99.60	polyadenylate-binding protein RBP45-like OS=Cucumis melo OX=3656 GN=LOC103485380...	[more]
A0A1S3B3E5	1.48e-173	98.38	polyadenylate-binding protein RBP45-like isoform X4 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3B2A3	1.53e-173	98.38	polyadenylate-binding protein RBP45-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 223..297 e-value: 1.1E-18 score: 78.1 coord: 132..207 e-value: 3.8E-13 score: 59.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 133..197 e-value: 2.0E-12 score: 46.8 coord: 224..291 e-value: 2.7E-13 score: 49.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 131..211 score: 15.630307
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 222..301 score: 16.3978
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 75..214 e-value: 6.0E-24 score: 86.5 coord: 215..315 e-value: 2.9E-20 score: 74.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..129
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 82..311
None	No IPR available	PANTHER	PTHR47640:SF48	POLYADENYLATE-BINDING PROTEIN RBP45B	coord: 82..311
None	No IPR available	CDD	cd12345	RRM2_SECp43_like	coord: 221..300 e-value: 1.96459E-49 score: 157.826
None	No IPR available	CDD	cd12344	RRM1_SECp43_like	coord: 132..210 e-value: 1.93069E-47 score: 152.802
None	No IPR available	SUPERFAMILY	81995	beta-sandwich domain of Sec23/24	coord: 65..127
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 129..304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G14323	Cucsat.G14323	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T22.E1	Cucsat.G14323.T22.E1	exon
Cucsat.G14323.T22.E2	Cucsat.G14323.T22.E2	exon
Cucsat.G14323.T22.E3	Cucsat.G14323.T22.E3	exon
Cucsat.G14323.T22.E4	Cucsat.G14323.T22.E4	exon
Cucsat.G14323.T22.E5	Cucsat.G14323.T22.E5	exon
Cucsat.G14323.T22.E6	Cucsat.G14323.T22.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T22.C3	Cucsat.G14323.T22.C3	CDS
Cucsat.G14323.T22.C2	Cucsat.G14323.T22.C2	CDS
Cucsat.G14323.T22.C1	Cucsat.G14323.T22.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T22	Cucsat.G14323.T22-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding