Cucsat.G14323.T13 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G14323.T13
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	polyadenylate-binding protein RBP45-like
Location	ctg1869: 5915191 .. 5926042 (-)
RNA-Seq Expression	Cucsat.G14323.T13
Synteny	Cucsat.G14323.T13

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAAAAAACGATAAATCTAATCGATTCCTACCGATCCCATTCCTTTTGCTTTCCTCCCTTTTCGCCTCCTTCTCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCGAACGACACACCCACCACTCTCTTTTTCTTTCTCCGTCTCCCCATCCTAAGGAGATTTGTTTTTCTTTTCTCCCCTTCTCCATAACGATGCAGCCTGCTCCTGGTGTTGCTCCTCACAACATTCCTCACCAGGCTCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCAGCCTCAGCCCCCGCAAGCACAGCCTGTTCCTCAGATGTGGCCTCAACAGCCGCAGGCTGGTTCTCCACAGGGCCAACCCCCTCAACCTGCCAACGGGGATGAGGTTCGTACGCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTACGTCAGTCAACGCCACCCATTTTTAGATCTTTTGTGTATATGTCTTTATTATTTGTTTTCATTGCTGTTGTTGGGAAAAGATTTGGTTTTATAATTATTAGGTTGAGTTCTTGAAGATTTGTGCCCACACATGTTACTGCATTGTGATTTCGGTGGACAAGAATCGTTTCCATTTCTTCTTTCTTCTTTCTTGTTTATAATTGATGTTGTTTATATCTGCAGGTTTCCTCCGTGAAAGTGATTCGGAATAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCGGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCACAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGATTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGGTATAACTCAGTTAAGGGTGCTAAAGTTGTGATCGATAGGCTCACTGGACGTACTAAGGGTTACGGTTTCGTAAAGTTTGGGGATGAGTCTGAACAAATTCGGGCTATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCAGTCAGCAGTTTTCGAAAAGTAAATACGAACTCCCCCCCCCCGAAACTGGAAAATTTTAAATGAAAAACAAGGCATTGAATTTTGTTTGGAATATCTTCTCAGTCATTCATTCATCATATGGATGTGCCCATTTGTGCTTACTGATTAGTGTTTTTCGATTCATTTTGCTTTCAATATGGCAAGATGCAATGCAACTTCTATTTTCTGTCCTGATTTAGCTCCTCTCCGTTACTTCTATTTCTAGTTTCCAGCATTTTAATTCCCCTCTCGTATACCTTGGAAGAATAGCCTTTCATGCCTTTTCCTTCGTGTACTTCCAATTCGAGCTTTGGTCATTTTAAGTACTATAAAGAAGAATTAATAAACTTATAAAACTCCTCTTTTCTTTAAGCAGGGTGTCAAAAGGCTCTGTCAGCTTGGGGTCCGCTACTGATTTCAGCTGACACGCTTACCCTTTAATACGTTGTTCCATTTAGGTCAGTTTTTTTTCCGCCAATGTCTTACCTCTTTCTTTTTATGTGGCATATTTATGCTGCGGTTTTTAATTCACCTTTAGTTCTGCAACGTTTAGTTTTTCCTTTGATTTGCATGGGTATTTTTTTCTCTCCCTGGCATTTTACCACTTCTAATTCCTTTATTTTTCTTTAAAGTTTAGGTCACTTGTCTTAGGTTCTTTAGCTAGATGGTTTTTTTAAATTTCCAGCAACTGGGAATTTGGAGTAACATAGTTTGGTTCTGAACTTTCCTTCTACAACTGCAGTAGGTCATATAGGTTGAGCTTGTCCTTCACCTCCTAATATTTTGGGTTTATGGGATTTACTCTATGTTTTATTTTCAATATTTGATGGTTGGATTCCCTTTTTGTAGACAAATCATCTATCAACAAAAGGTTTTGATACATTTCTTGATCTGCCTGAATTTTCATTTCTTACTAGCTTTTCATTCTGTAGCTCTGTATTTCGTTAAGTCTTTCCTTTGGAATATTCTATTCTTCTTCCATCGCGGTGGGTCTATTTTCATCCAAGTATGCTCTGTATGTATCTTTCTTGTAGTTAGGATTGTATTGATTGGTTTTGTTGATTTAAAGGCTTCTAGTTTTTTTTTTTTTAATGCTCATACCATTTCTTGGTGTGAATCATTTCATGTGATTGATTGGCTAAATAGTGGTGCGTGGCAGAATTTCCAATACGTCACATTATGGTTGCCTCAAGTCAGAAGTTGAAGAGGCTATATGTTTTATTTTAGTTCATTAGATCAGAATTTCTCGTGTATTATTATGTAGGCTTTTTCACAATTAATCTGGTCTCCATGATGAATCACTTGGTTATTTTGCATTTATTATGTTTGGCACAGTATCTTTTATTCTTCATATTCCGATCTCCATGTTATTGTTTTTGTATTGATATGAGCTGAAAGCCTTGAAGTTCTTCAAATCTTATGCCTTTTTGAAATTATAGGAGGCTTACATCTTTGAGGTGTAAAATAGGTAAACCTCAGTGAATGATAGAGAAGACAATAATCAAATATGGAAATTTTGAAGAGTTGGAATGTCGACATTATGGTGGCTTCTGTTTGATGGGAATTTTTAGGGGAGAATTAATTATCGATGTGGCACATTGTCTGCATTTTAAGACCATTTCAAGTTATCTTCATTTGAATAAAAAAAAAAATCAGGTCCCATAAGAGTTTAGTCCCCTCCCCCTCCGTAATATATATAATTATAATTATTTCCGTTGTTCGGTATTAGCTATTACAGCCAGGATGTGACTGTTATAATTCTGCATCTATTTAAAGAATGGATGTCTCTTTTCATGGATATTTTGATTGCTAGTCATTTGAATTTATCATGTTTTAGTTTGCATGTATCTTGGTTTTAATTTTCATTACTATTATTTACCATAACGATAATGCAACATGATAATGACTTGGGTAAAAATGATCTAAGGATTTTTTTAGTTCATGTTGATAGAAGATGTCATTTTAGTTTAATATTTTCAAATGCAGCTTCATACCAGAATCCTCCAGGCACACAGAATGAGAACGATCCAAATAATACAACTGTGGGTACTCCAATAATTTTCAATAGCAATATTATCTCATGGACGTATTTATGAGTTATTATTTGATTTTGTTTCAGATATTCGTGGGGAATTTGGATTCTAATGTCACTGATGAGCACTTGAGACAAGTATTCAGTCAGTATGGAGAGCTGGTGCATGTTAAGATTCCTGCAGGCAAACGATGTGGCTTTGTTCAATTTTCAGACAGGTTGGTATTTTCAAAAGCTTTCATGACACCTACGCCCCTTCTTCCCATCATGTGGTGTTCATTTGCTCATGAGTTTTGTATTTTGTTTTCCTTAATACTATTTTAGAAGCTGCGCCGAGGAAGCTTTGCGCATTTTGAATGGAACCCCAATTGGTGGGCAAAACATTAGACTTTCGTGGGGTCGTAGTCCTTCTAACAAACAGGTACTATTATTGTGCTTCACTTGTATTCTTGTATTCATTAAAGCAAATAATATATTAGCTTTATTGACCTCTATTTTAAATTTACAGCCTCAGGCTGATCCTAATCAATGGAATGGAGGAGGAGGTGGAGGAGGAGGATATTATGGATATGGACAAGGATATGAAAATTATAGCTATGCTCCAGCTGCCCAAGACCCTAACATGTTCTACAGTGGCTATGGTGGGTATGGGAACTACCAGCAACCAGCAACACAGCAGCCATCACAGCAACAAGGTGGATATATGTAGATGACAAGTTCTATTTCTCTTGCCTCACCTCTCAATTCGAATGAGACCCTAAACTTCTGCTTGTCATTTGTAGAAGATTTTGGAGATGTTACTCTCTCATCTATTCTAAACAAATATTCTGTATGACTCCGTTGACTTGATGTCAGTTGTGTGTTGTATTTGGCGTTAGAGGTTTTTGCGTGTTGTGTTATTTGTTTCTTTTCATATGATCATATCTATTATGGTAGGAGTTGAATGATCTTGTAATTTTCTCAAGTCCTTGTTAAAGGCTGTACGTGGGTTAACTACTTACTACTTATGTTCTTGCTGATGTTTCTCTACCCTATTTCACTTTTTCTGGCTTGAAACTGTTTGTTATGTTTTTTCATAGTATTACTGTACAATGGGAATTGTCGTCGAACCATTGAGACGTTTGGTTTCTGAAATTGTTCAACTTTTGCTTGTACAATATTGAAGGTGTATTCATTGTTTAATTAAAATCGGTTAGCCATTACTAGATTAATTCCAAATTTCTTAATCCTATTATGCGCCTTATGCAACAGTTCATTAATAGATTAATTCCAACTTGCTAGATTCAATTTTGTGCCTTATACGAGTTTATAAACACAAGTTCGCTTAAGTTTAAATTTCATCCTTAAATAAATACATAAATGGATTTGGACTAATGTTGCGAATTGAATTCTTTTCTGGACTAATGCCAAAGATACAATGTCTAAAATCTTCCAAAAGTGATCAGTCTTAATGAAAATGGAACTTTCATGTGAAGTATTGGCTCTTCATTCAAATCTCTTCACCTCCAAAGAGAGAAAATATATTTTCCAGACATTGTGGGAGATTGGAATAAGTTAGCTTATAATACTGAATTTAATAGGAAGACCTAATATTGGTGTGTGGTTGGTACTGTTTGGACTTCATGTGCTTGGTTTTGAATTAGTATTTGTGGCTTGAGTTGTGTTGTATGCTTATTCATTTATTGGGTTGTAGATTTCTTCAAACTAAATAATTTTAGTTAAAAATTCCAACAAAATTCAACCATGAAATATTTGACTTGACTCAATTCGAGTTACTCGAGCAAAAAGTAAAATTTAGTAGGTGGTTTTCTTATTTAATTATTTTTATATATTAAAATAAGACATGTTTTACTCATGTTCAACGAATAATGAATCAACGGTGATCTAAAAAGGATTCATGTGATTATGTTTAGTGTTGTTTAATTATGTTATAATACAAGGAGAGCACATGTCTAAATAAGTTGTCATCCTATTGATAAACACTAATGCTACCATTATCGTTTGTGATTATCATCATTGTCACTCTTTTATAGAAAAAACTATGGGTTAACACGAGATTTTGACCAAATAAATTTTATTTGTGAAAATGCAAATATTACAATATTTAATTTTTACCGTCTAGTATGTTCTCTTAAATATATAAAATTCAATTTTTAAGTTTGTTGATCTTCTTCTATTATGAGTCGTTGGACCTGTTGATCTTTTTTAGGATCAATCTTCAACTTGTAGATGGTGAAAAAACGATTAATTTGATGAAGTCTTCAAAATTTTCAGAATATCAGTCTTCAGTTTTTATATGATGAAAAGTCGATCAATTAGTCGAAGTTTTCAAACATTTGAAAAGTTCATTTTTCAATTTGTAGATGATGCATATACGACAAAGTTGTTGAAGAAAATAAGATATATTCATTTGAAGAATAGATGGTGAACTTGTTGAAAACGAATAAATGATTTGTTCGCTAGAGATGGTCAATCAAATATGAATATGACACATTCTCTTTCTTGAAGAATAGATTCACGATTTGTTGAAGAACAATTTGTGGAATTTTCTTAGATTAATGGATCTATGTCGAATGCCTCAAGTGAAGGATTAGCTACGGTCTATTGACTTGGATTTGGTTCAGTTTCGACCCATCTCTTATATTAAATAGTTAACATGATATAAAGTAATGTATTTGTTGAAGTTTATTAAGTCTAAATAGTAATTTATAACTAATAATTAAAAGTAACAATAATGATTAATGGATATTAACTTGTTAAGTAATCATACTTTCTTCTTTCTTCATTCTCCAGCCAAATCTCATAACAATAAACATATTTTTTGAAAGTTTTAAGAACCTTTTCTAAAACATTTAAAAGTTTATATACATTTTTCTGTGTAGTTTAGAAAAAAAAAAGTATTAAATAAAAAATATGACGATTTTATAGACCGAAAATAGTTTATCTACAAATACGAATGGAAAACCGTTTTCAAAAAATAGAATTCAAGTTTCCAAATATTTTAAAAAGCAGAGTTCAAAATTGAAAAGAAGAAATAGAAAACATAAAACAAAATGACAGATGTATTTAGAAATGTTTAACGATTTGTAGAGAAAAAAAGAAAAACATTTTATTTTCTTTGTTCTAAGTGAATCCAAATGTGAAAGGTTTGGTGAGTTTTTGGGATAAGTAAAAACGTACCAAACAAATTATTTTTATTTTATTTCCTTTTTTAAAACGATAAATGTAATCGATTCCCCCACTGGCCCCCTTCTCTTTGTTTCCTCCCTTTTCGCCCATTATCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCAGACGAGACACTCAAAACTCTCTTCTTCTTTCTCCTTCTTTCCTCACTAAGGAGATTCTCTTATCCCCTTTCTCCATTACCATGCAGCCTGCACCTGGTGTTGCCCCTCACAACATGCCTCACCAGGCCCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCCCCCTCAGCCGCCCCAACCTCAGCCTGTTCCTCAGATGTGGCCTCAGCAGCCACAGGCCGGTTCCCCACAGGGCCAACCCCCTCAGTCTGCCAACGGGGATGAGGTTCGTACCCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTACGTCTAAGAACGCCACCCCACTTTAGATCTTGTGTGTGTGTGTCTTTATTATTTCTTTTTATCGTTGTTGTTGGGAAAAAAAAGATATAGTTTTGTGATTATTAGGTTGATTGCATAAAGATTTGTCTACACACATGTTGGTATATATGAAGCGGTTCCGAAATTTCGTTTTTTTTTTTGCTGTTGAGATTTAACATTGTTTGTCTCTCCAGGTTTCCTCTGTGAAAGTGATTCGGAACAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCAGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCTCAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGACTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGCTATAACTCAGTTAAGGGCGCTAAAGTTGTGATTGATAGGCTCACTGGACGCACTAAGGGTTATGGATTTGTTAAGTTTGGGGACGAGTCTGAACAAATGCGAGCAATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCGGTCAGCAGTTCTCGAAAAGTAAATACGAATTCCTCCCCAAACTGGAACATTTTAAATGAAAGACAGGGCATCAAATTTTGTATGGAATAGCTTGTCCATCATTCATTCATTGTATGGATGTGCCGTTTGTGTTTACTGATTTGTGTTTCTGGATGCATTTTGCTTTCTTATGGCCAGACGCAATTCTTATTTTCTGTCCTGATTTAGCTCCTCTCCGTTACTTTTATTACTAGTTTCTAGCATTTTAATTCCCCTCTCGTATACCTTGGAAGAATAGTAGCCTTTCATGCCTTTCCATCGTGTACTTCCAATTCGAGCTTTGGTCATTTTAAGTACTATAAAGAAGAATTAATAAACTTATAAAACTCCTCTTTTCTTTAAGCAGGGTGTCAAAAGGCTCTGTCAGCTTGGGGTCCGCTACTGATTTCAGCTGACATGCTTACCCTTTAGTACGTTGTTCCATTTAGGTCAGTTTTTTTCCCGCCAATGTCTTACCTCTTTTTTTTTATGTGGCATATTTATGCTACGGTTTTTAATTCACCTTTAGTTCTGCAACGTTTACCTTTTCCTATCATCTGCATGGGTATTTTTTTTGTCTCCCTGGTATTTCAGTCTTAATTCCGTTGGAAGTTTTTATTTTTTCTTTATTAAGTTTAGGGTACGCAGGTTCTTTAGCCAGTTTCATTATTGAAATTTCAGTATGTCTTGCGGCTATTGCTGGCCACTTAGGGTTGTGCTTGTCCTTCTCCTCCTGGCATTTAGGGTTATATGGTTTTACCTTCCTATTGTTTCATTTCAGTATTTGATGATTGGATCTCATTTATGTGTCCAACCCATTACCTGCAAAAGAATTTTGGTCAGCACAAAGTCATGTTTCTTAGTGTTATTAGGGTTCTTAGGAGTCTTATTTCTTACTAGTTTTTTGTTGTGTATCTTGGTATTCATTTTGTCATTCCTTTAGAATATTTCGTTCATCTTCTAAAGTTTTGAATTGGACATAGATATGTTCGGGTATACTTTCTTTGTTCTTTTAAGTAGGATCCTATTAATTGTTTTATTCTGTTCCGTTGTGTGAATCACTTTTATGTGAATGGTTGTGCAAGTTAGGTGCGGTGGATTCTGAGAATGGCATAATATGGTTGTTTGAGTCTGAAGTTAGGTACTCTAGTTGTGATATCTAGTTTTTTATGATGAAAAGCTTTATTATGTCAATTTCTTTTTTAATAATGTGTTTCTCTATGTTTTTCAAATTTACATTCTATGTTGAAATGAGCATGTTTATTTTCTTTTTTTATATTTTGGCCGTATGGTGATCATCATTAGATAATTATGATTGTGCCTTTATGGATTGTCAAAACTTCTATTTGAAATATTGTCTAGTTTTATATTTCTTAGGGCACACGTTGAAATTGGTACTTGTCTTCTAGTTATGCTATTTTGTAACAAATATCGCTCTAATGTATATTTTTCAAATTTCCCAATTTTGTTTGTGAAAATGGACTTCCTATGTACGTAATTTTCTGGATATCTTTTGTAGTTCTTGTTATTTTGGTATTCTTCGTGATTTCTCAATATGAGTACTTCTATGTTGCCCGTTATACCTACTGCCTCTGGTTTTTCCCCCTATAATGAAGCCGACTTTAGGTTGCATCGAACCATTTAAAACAGTGTGACTCTGTAATTCAAAATTTGCTTGTGTTTCAATTTTGTTGTTGGAGTCTTTTTTGAACATGCAACATATGGCATTGAGCCTAGTTCAACAGCCCTCTAAGCCAACCAGCTATGGAATTATTTGGTTGGAGGTTTGATTTGTTATAAGTGGAGCACACAGTGTTTATGCAGGTCTTGTGGATTCTATTTTTTATTTCTCAGTACACATTGCTTATTGCATTGATGTATATTATTTATGCAAGCTTGGACTGTAGCAGAATAATTGATATTGTGTGTTTAACAACTGCTGAACTGGTTGGTTCAAGTTAAAGAGCAAGTTCATTTAGGTTTGATTTTTTACTATTGCAGCTTCATATCAGAATCCTCAAGGGGCTCAGAATGAGAATGATCCAAACAATACGACTGTGGGTTCTTTACCTTATTTTTCCTTCGTCATGTAATTTTATTTGAGTTTTCTAACTTCTGAAATCCTATTGCAGATATTTGTGGGCAATTTGGATGCTAACGTGACAGACGAACACTTGCGACAAGTATTTGGTCAATATGGGGAATTGGTGCATGTAAAGATACCTGTAGGCAAACGATGTGGTTTCGTTCAATTTGCTGACAGGTTTGTATTTTGTTTCTTTTAAAAATATGAAACAGCTTGGTAGTTCTAACAAATGTAACCTAACATCTTAATCTCTCCTGAATTGGCTTGGACACATTTGATGGTTATTTCAATTTTGTTTTTAGGAACTGTGCTGAGGAAGCGCTACGTGTGTTGAATGGAACACAAATTGGTGGACAGAACATTAGACTCTCATGGGGACGTAGTCCTTCAAATAAACAGGTTGTGGTATTGTACTCTTTGTGTCCGTTGATGGTTATTGATTATAGTTCTTTCCGAATGTTCATTATTTTCTCATCTTTTTAGCCACAGGCGGACCCTAACCAATGGAATGGAGGTGGCTATTACGGATATGGACAAGGATACGAAAACTATAGCTATGCCCCAGCTCCTCAGGACCCTAATATGTTCTACAGTGGCTATGGTGGGTATGGAAATTACCAGCAGCCTCCCCCACAACAACCGCAGCAGCAGCAGCAAGGAGGATACATGTAGATTTGAAGTTTTGTTTACTCTGCCGTGGCCGCTCCCCTACCGAATCTCCCGGGGATATGATGGTTAAAGATTTTGGCAAAGTTATTTCACCCTCCCATTACATCCATTCTGAAGAACTCATCCTTTTCCTATTTTCTGTTCTACCTAAACTCTTTGATGACATGAGACATCTTTTCTTTTTTATTTATTATTATGTTATCCCGCAGAAGTTTTATTACGACTCTGTGTCGTTTATTTTCTATCACTACATTTTTGGTCTTTTGATGAGAGAGAATCTGGAGGCTTTTTGCCTTTGCTTATGAGTATTGCATTTTATACTGATTTAAACACTGACAAGTAATTCATCCCTAGCAAATTTATGGCCGCTGTGGGGTTGTGTTTTGTTTTTGTTTTTTCCGTTTCTGTTTTCTTCAGTACTTGTGAAAATTGTGCTACAACTATATTGTCCTATTTTATTGAATTGTATGGCTGTGGTATGAACACTTTTCCATGTGGGTCTTGACTTAGGATTACTACTTTTCAACCTTATTTAGTTTGTAAGATTT

Coding sequence (CDS)

AGAAAAAAAACGATAAATCTAATCGATTCCTACCGATCCCATTCCTTTTGCTTTCCTCCCTTTTCGCCTCCTTCTCGGCTTCTAGGGTTAGGGTTTCTCTCTTTGTCCGAACGACACACCCACCACTCTCTTTTTCTTTCTCCGTCTCCCCATCCTAAGGAGATTTGTTTTTCTTTTCTCCCCTTCTCCATAACGATGCAGCCTGCTCCTGGTGTTGCTCCTCACAACATTCCTCACCAGGCTCCTCAGTACCAACAACAGCAACCTCCTTACATGATGATGCAGCCTCAGCCCCCGCAAGCACAGCCTGTTCCTCAGATGTGGCCTCAACAGCCGCAGGCTGGTTCTCCACAGGGCCAACCCCCTCAACCTGCCAACGGGGATGAGGTTCGTACGCTCTGGATCGGAGACTTGCAGTACTGGATGGACGAGAACTATATCTTTAATTGTTTTGCTCATACTGGCGAGGTTTCCTCCGTGAAAGTGATTCGGAATAAGCAAACCGGCCAGTCCGAGGGTTACGGTTTTATTGAGTTTTTAACTCGTCCAGCTGCGGAAAGAGTACTTCAAACTTATAATGGCACCGCCATGCCCAATGGGGCACAAAATTTTAGATTGAACTGGGCATCAGCAGGGGAGAAGCGACAAGATGATTCTCCTGATTACACTATTTTTGTGGGAGATTTGGCTGGTGATGTTACTGATTATGTGCTACAAGAAACATTTAGGGCACGCTATAACTCAGTTAAGGGCGCTAAAGTTGTGATTGATAGGCTCACTGGACGCACTAAGGGTTATGGATTTGTTAAGTTTGGGGACGAGTCTGAACAAATGCGAGCAATGACTGAGATGAACGGTGTTCACTGTTCATCCAGACCCATGCGAATCGGACCAGCAGCTAACAAGAACACTTCTGGCGGTCAGCAGTTCTCGAAAAGTAAATACGAATTCCTCCCCAAACTGGAACATTTTAAATGA

Protein sequence

RKKTINLIDSYRSHSFCFPPFSPPSRLLGLGFLSLSERHTHHSLFLSPSPHPKEICFSFLPFSITMQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSGGQQFSKSKYEFLPKLEHFK

Homology

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BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot
Match: Q0J9Y2 (RNA-binding protein L OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-L PE=1 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.8e-80
Identity = 162/239 (67.78%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 72  VAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQP-PQPANGDEV 131
           + P   PHQ      QQPP M  QP PPQA    Q+ P QP   +P  Q  P PA  DEV
Sbjct: 32  IPPPMPPHQYGAPPPQQPPAMWGQP-PPQAH-YGQVPPPQPYYAAPPPQAMPAPAAADEV 91

Query: 132 RTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQ 191
           +TLWIGDLQ WMDE+YI+NCFA TGEV SVK+IR+KQ+GQ +GYGF+EF +R AA+R+LQ
Sbjct: 92  KTLWIGDLQPWMDESYIYNCFAATGEVQSVKLIRDKQSGQLQGYGFVEFTSRAAADRILQ 151

Query: 192 TYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVK 251
           TYNG  MPN    FRLNWASAGEKR DD+PDYTIFVGDLA DVTDY+LQETFR  Y SVK
Sbjct: 152 TYNGQMMPNVEMVFRLNWASAGEKR-DDTPDYTIFVGDLAADVTDYLLQETFRVHYPSVK 211

Query: 252 GAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTSGGQQ 310
           GAKVV D++T R+KGYGFVKFGD +EQ RAMTEMNG+ CSSRPMRIGPAANK T+G Q+
Sbjct: 212 GAKVVTDKMTMRSKGYGFVKFGDPTEQARAMTEMNGMLCSSRPMRIGPAANKKTTGVQE 267

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot
Match: Q9LEB4 (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP45 PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 9.1e-80
Identity = 172/273 (63.00%), Postives = 198/273 (72.53%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAP------QYQQQQPP------YMM--MQPQPPQAQPVPQ-MWPQ 125
           M P  GVA    P  AP      QYQQQ PP      +MM   QPQ PQ QP  Q  W Q
Sbjct: 1   MMPQSGVAQ---PPMAPMSMDQHQYQQQAPPPTQQQQWMMPPQQPQQPQFQPQSQPAWAQ 60

Query: 126 QP---QAGSPQGQPPQPA---NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIR 185
           QP   Q G+     P P+   N +EVR+LWIGDLQYWMDENY+  CF HTGE+ S KVIR
Sbjct: 61  QPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIR 120

Query: 186 NKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWASAGE-KRQDDSPDYT 245
           NKQTGQSEGYGF+EF +  AAE +LQTYNGT MPN  QNFR+NWAS G  +R+DDS ++T
Sbjct: 121 NKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT 180

Query: 246 IFVGDLAGDVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTE 305
           IFVGDLA DVTDY+LQETF++ Y+SV+GAKVV DR+TGR+KGYGFVKF DESEQ+RAMTE
Sbjct: 181 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 240

Query: 306 MNGVHCSSRPMRIGPAANKNTSGGQQFSKSKYE 317
           MNGV CS+RPMRIGPAANK   G  Q  K+ Y+
Sbjct: 241 MNGVLCSTRPMRIGPAANKKPVGTPQ--KATYQ 268

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot
Match: Q9SAB3 (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B PE=1 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 3.5e-79
Identity = 165/249 (66.27%), Postives = 186/249 (74.70%), Query Frame = 0


Query: 67  QPAP-GVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 126
           QP P G+ PH+ P   P   QQQ  Y         A P PQMW   PQA +P     QP 
Sbjct: 4   QPPPGGILPHHAP---PPSAQQQYGYQQPYGIAGAAPPPPQMW--NPQAAAPPS--VQPT 63

Query: 127 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 186
             DE+RTLWIGDLQYWMDEN+++ CFAHTGE+ S KVIRNKQTGQ EGYGFIEF +  AA
Sbjct: 64  TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 123

Query: 187 ERVLQTYNGTAMPN-GAQNFRLNWA--SAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETF 246
           ERVLQT+N   +P+   Q FRLNWA  S+G+KR DDSPDYTIFVGDLA DVTDY+L ETF
Sbjct: 124 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR-DDSPDYTIFVGDLAADVTDYILLETF 183

Query: 247 RARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANK 306
           RA Y SVKGAKVVIDR+TGRTKGYGFV+F DESEQ+RAMTEMNGV CS+RPMRIGPAA+K
Sbjct: 184 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 243

Query: 307 NTSGGQQFS 312
               GQ+ S
Sbjct: 244 KGVTGQRDS 244

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot
Match: Q93W34 (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana OX=3702 GN=RBP45C PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-71
Identity = 150/251 (59.76%), Postives = 173/251 (68.92%), Query Frame = 0


Query: 67  QPAP-----GVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQ--PQAGSPQ- 126
           QP P        P  IP     Y QQQ  +MM   Q  Q QP P  W QQ  P +G PQ 
Sbjct: 4   QPPPASNGAATGPGQIPSDQQAYLQQQQSWMMQHQQQQQGQP-PAGWNQQSAPSSGQPQQ 63

Query: 127 -----GQPPQPANGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEG 186
                G    P +  E+R+LWIGDLQ WMDENY+ N F  TGE ++ KVIRNKQ G SEG
Sbjct: 64  QQYGGGGSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEG 123

Query: 187 YGFIEFLTRPAAERVLQTYNGTAMPNGAQNFRLNWA--SAGEKRQDDSPDYTIFVGDLAG 246
           YGFIEF+    AER LQTYNG  MP+  Q FRLNWA   AGE+RQ + P++T+FVGDLA 
Sbjct: 124 YGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAP 183

Query: 247 DVTDYVLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSS 303
           DVTD++L ETF+A Y+SVKGAKVV DR TGR+KGYGFV+F DESEQ+RAMTEMNG +CSS
Sbjct: 184 DVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSS 243

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot
Match: Q9FPJ8 (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana OX=3702 GN=RBP45A PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.9e-69
Identity = 141/226 (62.39%), Postives = 166/226 (73.45%), Query Frame = 0


Query: 87  QQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQ------PPQPANGDEVRTLWIGDLQY 146
           QQ  +MMMQ Q        Q   Q   + +P GQ         P +  +V++LWIGDLQ 
Sbjct: 18  QQHLWMMMQQQ--------QQQQQMQLSAAPLGQHQYGIGSQNPGSASDVKSLWIGDLQQ 77

Query: 147 WMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAAERVLQTYNGTAMPNG 206
           WMDENYI + FA +GE +S KVIRNK TGQSEGYGFIEF++   AERVLQTYNG  MP+ 
Sbjct: 78  WMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPST 137

Query: 207 AQNFRLNW--ASAGEKR-QDDSPDYTIFVGDLAGDVTDYVLQETFRARYNSVKGAKVVID 266
            Q FRLNW  A AGEKR Q + PD+TIFVGDLA +VTDY+L +TF+  Y SVKGAKVV+D
Sbjct: 138 EQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD 197

Query: 267 RLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKN 304
           R TGR+KGYGFV+F DE+EQMRAMTEMNG +CS+RPMRIGPAANKN
Sbjct: 198 RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN 235

[Close]

BLAST of Cucsat.G14323.T13 vs. NCBI nr
Match: XP_004145107.1 (polyadenylate-binding protein RBP45 [Cucumis sativus])

HSP 1 Score: 504 bits (1297), Expect = 3.56e-176
Identity = 247/254 (97.24%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYEFLP 319
           G QQFSK+ Y+  P
Sbjct: 241 GSQQFSKTSYQNPP 254

[Close]

BLAST of Cucsat.G14323.T13 vs. NCBI nr
Match: XP_008441163.1 (PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis melo] >KAA0056864.1 polyadenylate-binding protein RBP45-like [Cucumis melo var. makuwa] >TYJ99367.1 polyadenylate-binding protein RBP45-like [Cucumis melo var. makuwa])

HSP 1 Score: 503 bits (1294), Expect = 9.83e-176
Identity = 246/254 (96.85%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYEFLP 319
           G QQFSK+ Y+  P
Sbjct: 241 GSQQFSKTSYQNPP 254

[Close]

BLAST of Cucsat.G14323.T13 vs. NCBI nr
Match: XP_008441150.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X4 [Cucumis melo])

HSP 1 Score: 499 bits (1285), Expect = 1.92e-174
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

[Close]

BLAST of Cucsat.G14323.T13 vs. NCBI nr
Match: XP_008441142.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X3 [Cucumis melo])

HSP 1 Score: 499 bits (1285), Expect = 1.99e-174
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

[Close]

BLAST of Cucsat.G14323.T13 vs. NCBI nr
Match: XP_008441139.1 (PREDICTED: polyadenylate-binding protein RBP45-like isoform X2 [Cucumis melo])

HSP 1 Score: 499 bits (1285), Expect = 2.07e-174
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL
Match: A0A5A7UNS2 (Polyadenylate-binding protein RBP45-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005850 PE=4 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 4.76e-176
Identity = 246/254 (96.85%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYEFLP 319
           G QQFSK+ Y+  P
Sbjct: 241 GSQQFSKTSYQNPP 254

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL
Match: A0A1S3B3F4 (polyadenylate-binding protein RBP45-like OS=Cucumis melo OX=3656 GN=LOC103485380 PE=4 SV=1)

HSP 1 Score: 503 bits (1294), Expect = 4.76e-176
Identity = 246/254 (96.85%), Postives = 250/254 (98.43%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQ+RAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQIRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYEFLP 319
           G QQFSK+ Y+  P
Sbjct: 241 GSQQFSKTSYQNPP 254

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL
Match: A0A1S3B3E5 (polyadenylate-binding protein RBP45-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485366 PE=4 SV=1)

HSP 1 Score: 499 bits (1285), Expect = 9.32e-175
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL
Match: A0A1S3B2A3 (polyadenylate-binding protein RBP45-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485366 PE=4 SV=1)

HSP 1 Score: 499 bits (1285), Expect = 9.65e-175
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

[Close]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL
Match: A0A1S3B2Q3 (polyadenylate-binding protein RBP45-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485366 PE=4 SV=1)

HSP 1 Score: 499 bits (1285), Expect = 1.00e-174
Identity = 244/251 (97.21%), Postives = 247/251 (98.41%), Query Frame = 0


Query: 66  MQPAPGVAPHNIPHQAPQYQQQQPPYMMMQPQPPQAQPVPQMWPQQPQAGSPQGQPPQPA 125
           MQPAPGVAPHN+PHQAPQYQQQQPPYMMM PQPPQ QPVPQMWPQQPQAGSPQGQPPQPA
Sbjct: 1   MQPAPGVAPHNMPHQAPQYQQQQPPYMMMPPQPPQPQPVPQMWPQQPQAGSPQGQPPQPA 60

Query: 126 NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 185
           NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA
Sbjct: 61  NGDEVRTLWIGDLQYWMDENYIFNCFAHTGEVSSVKVIRNKQTGQSEGYGFIEFLTRPAA 120

Query: 186 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 245
           ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR
Sbjct: 121 ERVLQTYNGTAMPNGAQNFRLNWASAGEKRQDDSPDYTIFVGDLAGDVTDYVLQETFRAR 180

Query: 246 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 305
           YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS
Sbjct: 181 YNSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMRAMTEMNGVHCSSRPMRIGPAANKNTS 240

Query: 306 GGQQFSKSKYE 316
           G QQFSK+ Y+
Sbjct: 241 GSQQFSKTSYQ 251

The following BLAST results are available for this feature:

BLAST of Cucsat.G14323.T13 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0J9Y2	1.8e-80	67.78	RNA-binding protein L OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-L PE=1 SV=...	[more]
Q9LEB4	9.1e-80	63.00	Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4...	[more]
Q9SAB3	3.5e-79	66.27	Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana OX=3702 GN=RBP45B P...	[more]
Q93W34	1.2e-71	59.76	Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana OX=3702 GN=RBP45C P...	[more]
Q9FPJ8	1.9e-69	62.39	Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana OX=3702 GN=RBP45A P...	[more]

BLAST of Cucsat.G14323.T13 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145107.1	3.56e-176	97.24	polyadenylate-binding protein RBP45 [Cucumis sativus]	[more]
XP_008441163.1	9.83e-176	96.85	PREDICTED: polyadenylate-binding protein RBP45-like [Cucumis melo] >KAA0056864.1...	[more]
XP_008441150.1	1.92e-174	97.21	PREDICTED: polyadenylate-binding protein RBP45-like isoform X4 [Cucumis melo]	[more]
XP_008441142.1	1.99e-174	97.21	PREDICTED: polyadenylate-binding protein RBP45-like isoform X3 [Cucumis melo]	[more]
XP_008441139.1	2.07e-174	97.21	PREDICTED: polyadenylate-binding protein RBP45-like isoform X2 [Cucumis melo]	[more]

BLAST of Cucsat.G14323.T13 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNS2	4.76e-176	96.85	Polyadenylate-binding protein RBP45-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B3F4	4.76e-176	96.85	polyadenylate-binding protein RBP45-like OS=Cucumis melo OX=3656 GN=LOC103485380...	[more]
A0A1S3B3E5	9.32e-175	97.21	polyadenylate-binding protein RBP45-like isoform X4 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3B2A3	9.65e-175	97.21	polyadenylate-binding protein RBP45-like isoform X3 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S3B2Q3	1.00e-174	97.21	polyadenylate-binding protein RBP45-like isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 223..297 e-value: 1.4E-18 score: 77.8 coord: 132..207 e-value: 3.8E-13 score: 59.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 224..291 e-value: 7.7E-13 score: 48.1 coord: 133..197 e-value: 1.9E-12 score: 46.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 131..211 score: 15.630307
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 222..301 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 130..209 e-value: 3.6E-23 score: 83.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 210..314 e-value: 9.9E-21 score: 76.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..129
None	No IPR available	PANTHER	PTHR47640:SF48	POLYADENYLATE-BINDING PROTEIN RBP45B	coord: 82..311
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 82..311
None	No IPR available	CDD	cd12345	RRM2_SECp43_like	coord: 221..300 e-value: 5.01071E-49 score: 156.67
None	No IPR available	CDD	cd12344	RRM1_SECp43_like	coord: 132..210 e-value: 2.91329E-47 score: 152.032
None	No IPR available	SUPERFAMILY	81995	beta-sandwich domain of Sec23/24	coord: 65..127
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 129..304

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G14323	Cucsat.G14323	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T13.E1	Cucsat.G14323.T13.E1	exon
Cucsat.G14323.T13.E2	Cucsat.G14323.T13.E2	exon
Cucsat.G14323.T13.E3	Cucsat.G14323.T13.E3	exon
Cucsat.G14323.T13.E4	Cucsat.G14323.T13.E4	exon
Cucsat.G14323.T13.E5	Cucsat.G14323.T13.E5	exon
Cucsat.G14323.T13.E6	Cucsat.G14323.T13.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T13.C3	Cucsat.G14323.T13.C3	CDS
Cucsat.G14323.T13.C2	Cucsat.G14323.T13.C2	CDS
Cucsat.G14323.T13.C1	Cucsat.G14323.T13.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G14323.T13	Cucsat.G14323.T13-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding