Cucsat.G13879.T3 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TGTTTCCTCACATCCTTAGTTATCAACTCCCTCACCACTTCCTTTTTCTCTCCGCCACTATCCGGTGCTTCAATGGCGTTGACACTGAATACACTTCCATCTCTAAGATTGTCCAGCATCCATGCCAATAGAGTTCGATTTCAATCTTCTTTATCGCCAGTTTCTGTTTCTTTTTCTAGTGAGTTTCACTCTCTAATGCTTTACTGATTTCTGCAAACAACCAAACCAAATTGAAACGCGTTCATATCCCATAGCCTTCGAATTGAAGAATGAGCGTTTTCATTTAAGCCCTATGTTACTTCCATTGTCCTTCCAATTTTCTTTTTCTTCTTCACGGATTTCTCTGGCTTCCATGTCGATTTTGAGATATTAAGTGTTAGTTCTTATTTCTACTGGTAACGACAATTGTTCATTGTTCTAGGAAGGAGGCTCTCGGTTGTTGCTGCTGAAACTGACGCGAATGAAGGTACCTGTTGCTTTTTTTTTTTTTCTTTTTACATAGTTTGGTTCTTTTTTTTTTTCTTTTTTTATGTTGACCGGTGGAATACTTTGACTCTCGGCAGTTTAGATAATTTCGAGAAATTTGCAGAATCGATTTAATTGGAGCTGTCGTATTTACATTTTTCTTATTTGTTTTGATCAGTTAAATCTAAGGCGTCAGATAAAGCGCCGGCAGGTGGTGGTTCGAGCTTCAACCAGCTTCTTGGAATTAAAGGCGCTGCGCAAGAAACTGTGAGTTACCTTCATGTTCTCAGCTTGTTTTTTAGGAAGATTTGAATGTAAGTCCTTAATAAATTCTTCATGTGCACTTTATGCAGAATAAATGGAAGATTCGACTTCAATTGACAAAGCCTGTTACATGGCCGCCCTTGGTTTGGGGGGTAGTTTGTGGTGCTGCTGCTTCTGGTACTCATTTTGTACATACTGAGACACTAAAATTGCATATGAAAAGTTGTTGATGAACTACTAACACGTATTACTATCAACTTACTTCCTAGTCATGATGAAAATTAGCGAGTTCTTCTCTTTTCAGAACTTTAAAATCTATTCTCGTGTTGTGTATTGTATGGTCAAATGCATCAGATGGTGGTCAAATGATTGATTACGCATATAGATCAAATGGGGACAGTACTAACTGATCTTTATTATGCTTTATTGATTAGTTTCCCCATCGAACTATTGAATATGGCTTCAACGATACATTATTTTTTTACAGGTAACTTCCATTGGACTATTGAGGATGTGGCAAAATCAATTGCTTGCATGCTTATGTCTGGTCCATTTCTCACTGGCTATACGCAGGTGAGCTCTCTTTGATGTAAAGCTTTCCTATGACTCATGAAAGTATTCAAGCACAAATAAGATAGACACGGTACTTTGGTTTTTTAGACAATCAATGATTGGTATGATCGAGAGATTGATGCAATTAATGAACCTTATCGTCCAATCCCTTCTGGTGCAATATCTGAGAATGAGGTATGAGTAAACCACTTGATATCCATTGACAGAGGCATATATGGTCCTTCCTTACCGGTTTCTTCCTTTCACATATTTGATCAGGTTATAACTCAAATATGGGTGTTGCTTCTAGGAGGACTTGGCTTGGCTGGTTTGTTAGATGTGTGGGTAGGTTCATAGAATTTGTGGAACTCGTCTTTCATGTCGACTGTTTTTCTTAAACTTCGTCCTTATTCTTCTCAGGCAGGACACGACTTTCCTACAGTCTTTTACCTTGCTCTAGGTGGCTCTTTGTTATCATATATATACTCTGCTCCACCTCTAAAGGTAACAAACAAAAGTTTAGTGTTTCTAAATTGGATCTTCTGGATGCTAAGAACATTTATTTTGTGGTTGCAGCTAAAACAAAATGGATGGATTGGAAATTTTGCGCTTGGAGCTAGTTATATTAGTTTACCATGGTGAGAAATCCTGTGATCTGTAGTTATAGGTAAATTGACATGCATTGTGAAGGATAAAGTCAATCAACCATTTCAATCTGTAATTGACTGGTTGATGAAGTCGATTGTGTTTCATATGAAAATTTGAAAACTTTCTTTGTGTTTAGTTTGCTTCATCTGAAGTCAATTTTCTTCTTTGTAGTGTTCACTCATTTTTTGAATTCCCTCCTACTTTTGAGCATATTGTTATCCCAGATAAAAGCTGATCGAAAGATGTATCCTGTGTATTGACCATGAAATCTATTTGCCATGATTAACACTACCCGCACAAATTTATTACTTATCCGCTTATAATGCACTTTGAATGGGGCCTCGAGTGTTGAACTCAAGTCCTATATATGGAACCATCAATCGATGGCTAGTTTGCCCTTTGCGGCTATCGGCAATTTCTTTTCTGTGTAAAGTTTATTGGATTGTTCCAGGCTCCACATTAATCATACTTATCACAAATTTCTCATTCTTTATAATGCGATAAGTTTGCCTTTTCCAGTAACAGCCAATTTTCAATCTCAGGTGGGCAGGTCAAGCTTTATTTGGGACTCTCACTCCTGATATTATCGTTCTCACACTCTTGTACAGCATAGCTGGTGTATGCTTCTCAATTTATTTTTGAGTTCCTAACTTCAAAAAATCCAATCCTAATCCGACTTCTGCTTTGTCTTAATCAGTTAGGAATAGCCATAGTAAATGATTTCAAAAGTGTTGAGGGCGATAGAGCTTTAGGACTTCAGGTATTTCATTCTAAAACACACTTTTTGATTACGTTAAATTAGTTTAGGCCTTATCAGGTTGTTTTTATTCTGTTATTCTATAGTCATCTTTTGTTATTTACTGCCCTTACAGTCACTTCCAGTAGCTTTTGGTGCTGAAACTGCTAAATGGATTTGCGTTGGGGCTATTGACATAACTCAATTATCTGTTGCTGGTAATTCATTTAGTACTTTTTATTCCTAAGGGATTCTCTCTTTAGAACAATGCGCAAGTTTAAAGCACACTATATCATTTTCTGATTGTACCGAGAAAATAAAAATACAAGTTGCTCGTTTCTTGGCTTCTGCCTTTCTGTAATATACATTTTGAAGGTTCTTCACTTGTTTGGGCTTCATCTTTTTGTACATGCATCAGTTCAAATAATCTTGTAACAATTGTATCCTATCATCCAATATCCGTACATCTACAAGATATGTCTTCAACTCTCAACGAAGCAGTTAACTGATAAGGACAAATGTCCCAAAAGTTTGTATGCAACAAAGAAAATATTAAACATTTGGCATTCTGATTGTTGGAAGGAAGAATTGGTCGGTCTATCCTTCGGTTCTCTTGCAAAATAATTCCTGTATCTCAATCAGAAAGATGGCGTTCTTCGGCTAAAGTTCCAAAAACATTTCTCTTAGCTTACTTCTATGAACTTGCATTATTGTAGGAGACCACTTATGGGACTTTGATACTAAAAGCTAAAACTATTATCTTGCCATGTTAGATCAAAAGAATTCTTATTTGTTTGCAATGTAGATTGAGAAATCACAAGCACTATTATAAAGTATAATGTAGATGCAAGAGTTTGATTTGGAATTGGTTAAAGACTGTTCCCTTTAATATATTTGAAATGAATGTGACTACTAATAATGTTCACTTATTGCAGGTTATCTGTTGGGAGCCGGCAAGCCGTATTACGCATTAGCACTGCTCGCTCTTATTGGTCCCCAAGTTTTCTTCCAGGTAAATACTTTAAAGAATTGTCATATGGTCAGTCTTCTCTTGAGTAGGCAGGCGCTACTGAAAACTGAACATAGTTAAGTACAACCTTACGTACTATGTACAAAGGAACATTCAGTATAGTGAGCCCTATATAATTTAGCAACTTAAAACAAAAGTATGCGTGTCAGAATGATAACACTTTTTAATATGCAAGTCAGGTTACTAGTCTTTGCAATAACGACAGGATCGGATCAACGGTATAGTAATGTGAGGTCTTATTATTTGTCGTTGCAAATTCCGTTAGCGATCTGGTCAACCATGCAGTAATTTGAGGTCTTATTTCCAATTGAATATTTGATGCCGCTCGCTCTCTATATATATGTAATTATAATTGGATGGATGTAATTATAATTGGATGGATGTGTATGCTTCGATAATCAGGCCTTAGCTGTACTTCCCTTTTAGTTGGAAAAAAAAACATGAATACTCTACTAATCCATATTATCATAATTCTTAATAGTTCAAGTACTTCCTCAAGGACCCCGTCAAGTATGATGTCAAATATCAGGTACTCAAATTCTTTCTCAAGGTGTAGATTTACATTTATAGAAACTAGAGCTGTGATGAAACATTGAAACATTAAAGTTCCCCAAGAAATCAAAAGCCCATGTCGACGCCAGACTGGCAAATTTTGGGACACAATTATTCCACCTTATGTTTGCAATAACATTTCAGGCCAGTGCGCAGCCATTTCTTGTGCTAGGTCTGTTGGTCACTGCTTTAGCAACCAGCCACTGAACCCAACATTGGAGAGAATTAAGCGCACACCTATGAAGCATGCGAGACAAATGCAAGGCCAGAGAAAGCAGGAAGCCAAGTCTTGTCACTCCCCCCCGACAGCAACTGGCTCAATTCAGGTTAAATTTTACCTTGTTTGGTAACAGCAGGTTTTGGATTTCTACCAACATGTTTCAAAGCTTTGATTTAGGATTGTATCACTATCAGTTCTTAGGTTAGGTTTGGTCTCCTATTACACGTCAGTTCCTACCATTGATGTCTTCTTACTCCGGGATGCAATAGGTTCATAATGCATACCTCTTATTCCATACAACCAACCAACCCTGTTTTGCTTGAGACATTTACTCATTTTGGGAATGTTTCATTTTAACCATCCTCAATAAAGATATGCATATCCATATCCCTTATGTTTAGCCATATGTGGCATTTGTAGGCAGATACACTAGAAAAAGACCGACTTTAACTGCTCACTCAAGGCAGAAACATCGATATACAGACCTGAAGTAGGCTATAAAGCCTTGAAATACAATTATTTATTCTAGACACTTTTAGGGAAAGTAGAAACTAAAAAAACAAAAAAAAGAAACTAAA TGTTTCCTCACATCCTTAGTTATCAACTCCCTCACCACTTCCTTTTTCTCTCCGCCACTATCCGGTGCTTCAATGGCGTTGACACTGAATACACTTCCATCTCTAAGATTGTCCAGCATCCATGCCAATAGAGTTCGATTTCAATCTTCTTTATCGCCAGTTTCTGTTTCTTTTTCTAGAAGGAGGCTCTCGGTTGTTGCTGCTGAAACTGACGCGAATGAAGTTAAATCTAAGGCGTCAGATAAAGCGCCGGCAGGTGGTGGTTCGAGCTTCAACCAGCTTCTTGGAATTAAAGGCGCTGCGCAAGAAACTAATAAATGGAAGATTCGACTTCAATTGACAAAGCCTGTTACATGGCCGCCCTTGGTTTGGGGGGTAGTTTGTGGTGCTGCTGCTTCTGGTAACTTCCATTGGACTATTGAGGATGTGGCAAAATCAATTGCTTGCATGCTTATGTCTGGTCCATTTCTCACTGGCTATACGCAGGTTATAACTCAAATATGGGTGTTGCTTCTAGGAGGACTTGGCTTGGCTGGTTTGTTAGATGTGTGGGCAGGACACGACTTTCCTACAGTCTTTTACCTTGCTCTAGGTGGCTCTTTGTTATCATATATATACTCTGCTCCACCTCTAAAGCTAAAACAAAATGGATGGATTGGAAATTTTGCGCTTGGAGCTAGTTATATTAGTTTACCATGGTGGGCAGGTCAAGCTTTATTTGGGACTCTCACTCCTGATATTATCGTTCTCACACTCTTGTACAGCATAGCTGGTTTAGGAATAGCCATAGTAAATGATTTCAAAAGTGTTGAGGGCGATAGAGCTTTAGGACTTCAGTCACTTCCAGTAGCTTTTGGTGCTGAAACTGCTAAATGGATTTGCGTTGGGGCTATTGACATAACTCAATTATCTGTTGCTGGTTATCTGTTGGGAGCCGGCAAGCCGTATTACGCATTAGCACTGCTCGCTCTTATTGGTCCCCAAGTTTTCTTCCAGTTCAAGTACTTCCTCAAGGACCCCGTCAAGTATGATGTCAAATATCAGGCCAGTGCGCAGCCATTTCTTGTGCTAGGTCTGTTGGTCACTGCTTTAGCAACCAGCCACTGA CFLTSLVINSLTTSFFSPPLSGASMALTLNTLPSLRLSSIHANRVRFQSSLSPVSVSFSRRRLSVVAAETDANEVKSKASDKAPAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTIEDVAKSIACMLMSGPFLTGYTQVITQIWVLLLGGLGLAGLLDVWAGHDFPTVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWICVGAIDITQLSVAGYLLGAGKPYYALALLALIGPQVFFQFKYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH Homology
BLAST of Cucsat.G13879.T3 vs. ExPASy Swiss-Prot
Match: Q38833 (Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHLG PE=2 SV=1) HSP 1 Score: 537.0 bits (1382), Expect = 1.7e-151 Identity = 286/388 (73.71%), Postives = 312/388 (80.41%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy Swiss-Prot
Match: Q5W6H5 (Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CHLG PE=2 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 3.1e-145 Identity = 271/347 (78.10%), Postives = 284/347 (81.84%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy Swiss-Prot
Match: Q9M3W5 (Chlorophyll synthase, chloroplastic OS=Avena sativa OX=4498 GN=CHLG PE=1 SV=1) HSP 1 Score: 511.9 bits (1317), Expect = 5.9e-144 Identity = 272/357 (76.19%), Postives = 285/357 (79.83%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy Swiss-Prot
Match: P33326 (Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=bchG PE=4 SV=2) HSP 1 Score: 147.1 bits (370), Expect = 3.8e-34 Identity = 93/289 (32.18%), Postives = 142/289 (49.13%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy Swiss-Prot
Match: P26170 (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=bchG PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 5.9e-27 Identity = 87/285 (30.53%), Postives = 137/285 (48.07%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. NCBI nr
Match: XP_004148612.1 (chlorophyll synthase, chloroplastic [Cucumis sativus] >KGN54387.1 hypothetical protein Csa_018018 [Cucumis sativus]) HSP 1 Score: 660 bits (1703), Expect = 8.52e-238 Identity = 344/373 (92.23%), Postives = 344/373 (92.23%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. NCBI nr
Match: XP_008464210.1 (PREDICTED: chlorophyll synthase, chloroplastic [Cucumis melo]) HSP 1 Score: 643 bits (1659), Expect = 4.30e-231 Identity = 336/373 (90.08%), Postives = 338/373 (90.62%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. NCBI nr
Match: XP_022931922.1 (chlorophyll synthase, chloroplastic-like [Cucurbita moschata] >KAG7027406.1 Chlorophyll synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 636 bits (1641), Expect = 2.38e-228 Identity = 329/373 (88.20%), Postives = 335/373 (89.81%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. NCBI nr
Match: XP_023517325.1 (chlorophyll synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 634 bits (1636), Expect = 1.37e-227 Identity = 328/373 (87.94%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. NCBI nr
Match: XP_038883867.1 (chlorophyll synthase, chloroplastic [Benincasa hispida]) HSP 1 Score: 633 bits (1633), Expect = 3.93e-227 Identity = 329/373 (88.20%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy TrEMBL
Match: A0A0A0L1C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G311220 PE=4 SV=1) HSP 1 Score: 660 bits (1703), Expect = 4.13e-238 Identity = 344/373 (92.23%), Postives = 344/373 (92.23%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy TrEMBL
Match: A0A1S3CLE7 (chlorophyll synthase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502144 PE=4 SV=1) HSP 1 Score: 643 bits (1659), Expect = 2.08e-231 Identity = 336/373 (90.08%), Postives = 338/373 (90.62%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy TrEMBL
Match: A0A6J1EV65 (chlorophyll synthase, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111438198 PE=4 SV=1) HSP 1 Score: 636 bits (1641), Expect = 1.15e-228 Identity = 329/373 (88.20%), Postives = 335/373 (89.81%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy TrEMBL
Match: A0A6J1CS79 (chlorophyll synthase, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013846 PE=4 SV=1) HSP 1 Score: 632 bits (1630), Expect = 5.45e-227 Identity = 325/373 (87.13%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of Cucsat.G13879.T3 vs. ExPASy TrEMBL
Match: A0A6J1HPP2 (chlorophyll synthase, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466211 PE=4 SV=1) HSP 1 Score: 631 bits (1628), Expect = 1.10e-226 Identity = 327/373 (87.67%), Postives = 333/373 (89.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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