Cucsat.G13681.T26 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G13681.T26
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionthylakoid membrane protein TERC, chloroplastic
Locationctg184: 863089 .. 868659 (-)
RNA-Seq ExpressionCucsat.G13681.T26
SyntenyCucsat.G13681.T26
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACGAAGCTCCAAAGAACAAAAAAAGAAAATTATGGATAAGATATAGTGAGTCCTCAGTCTCCGCTATTCGAAGCGGTGGAAATGGCTTCAATCATCCACAACGGCCTTCAAATTTCTTCGAAGCTCGATTCTCCATGGCCTAAGGTTTCATCACATCTTCATTTTCATCCTCGAGCATGGGTTGAGGCTGTCCACAATCACGTTCCTCAATTTTCCCCAGGTTCAACTCTTCCCTTTTCTCTCCACTGTGAAGATCGGCGTAATCTGATTGAGTAATGTATGCATTCGTATTCGTAGTTATCCTCAATTGCCGTCCTTCTCCGCGCTCTTTGGTTCGATGCTCCAGTCGAATCGAGAGGGAAGGCGATCCGTCTACTGCAGGTCAGTGAGTGTTTCCGCGAGATTTTTCTTCTTCAAGTTTAATGGTGATATTCGTACATGTCTGTTTCAATTAGAGGTGGATAATAGCGAGGCATTTTTCAATTGTGGTTACTTGTTCATCATATGGTAACAGTGAGACGAATTTGCAGAAGCCAATAGGACGTCTTCCGTCCGAGGAACGATTGAGGGGTCTGAAAGTAAAGTTTCTTCTATTAGAAATGTTGCTCTATGTGTAAGCACTTGCTGGGCTTTAATTTTTTAATGTAATCAAACAGTATGGCTGTTCGTTGTTAATTGTTTTGCTACTGTTTATTCTCTGTTCTAGGTTGCTACTGCCGTGGCATTTGGTATTGGGGTGGGTTTGAAAGATGGAGTTGGCAAGGCATCTGAATTTTTTGCCGGGTATGTTACATACTACTTTTTACAATCGTCTCTCCAGTAAACAGACGATTTCTTCGGTTGTCTGTCATTTTCCTTTAGCAAGCTGATTGATAGGATGACAAATGGGATTGACCCTAATCAAATACGATTTATAAATTCATTGGTAATTGGGGAATAAAAAATGTCGTATAGGGAAGCATTATGCAGAATGCGACTTGCACTGCAGTCCCATACTGTTTTGGTTACATTGGTTCTTGGATTTGTGGCTTATGCTTAGCTTTTAAGGTGAACTGTGCATATTATCTAGGACAAGAGCGCATGTGCACATTTCATATTGGTACAAGTACAAGCTTAGTTTTGAACTTTGTAGTCTGTAACATTAATGTAGAGATTTGGAAGATCCAAACATACCTTACCTTGTATTGTAGAACTCCTCACTTTATTTTACTTCTTTATGCTCTGTCAATGTCTGATTTTATGACAATTTTCAGGTATCTTCTGGAGCAAAGTTTGTCAGTTGACAATCTCTTTGTCTTTGTTTTGATTTTCAAATACTTTAAAGTGCCAACGGAGTATCAGGTGCTAAGTTTGTCCAAAGCTATGACTAAATTGCTAGTTAGCATGCAAACTATTGCAATTACTTTGCTTTCCTGAATAATTTAACGTCTATGCATGTTGATGATTTTTTGGTTTTGAAATATAGAATCGGGTGCTTACTTATGGTATTTCTGGTGCAATTGTCTTTCGTCTAACAATCATACTTCTGGGAGCAGCCACTCTGCAGGTAACTTCTCTTCCTGTTGTATTCCAGTTTGCTCATATAGTCTATCTGAGAATTGTATCTACTATTTCAGAGATTTGAGGCTGTGAACCTGCTTCTGGCTGCTATACTTCTATTCTCATCATTTCAGGTTTTTGTTCTAAGCTTTTTACTTTTAAATTTCCATATGTTTTCTGATGATCAATTATTAGGACCTTTTAGCTTAAATGTATCATGAATTCTGCAGCTGTTTGCGAGCAATGAAGAGGATGACGGCGATCTATCAGACAACTTTGTAGTAAAGACGTGCCAACAATTAATTCCTGTTACAGGTATTTTGAAATTAGAGTATATTTGTTTTTGTGCTGGAGTATGTACTCGTGATAAGTGCTTGATCATTTATTCTATTTTCTTAACACATTTATTAGTTCAGAGGAAGTAAAGTAGACTCCTTTGCAACTTTTGTATATTTGCTACATGAAAAATGGTGAACCTCATTACTATGATGATCAACTTTCCTTAAATCACAGTCCATATTTGCTTAGGTAACTCATGAAGAAATTATTAAGAGGATTTATCAAAAAATAAACGGGAAAAGAATATTTTCATGCAATATAATTGAAATGTTTTTTAGTTATACGAGGAAAACACTAAATAGTGTATGAAAGTGTTACTTTTCCAGTCTGTTTGGTCGGCTTACTCTCAAATGGGACATTTGTATCTCTCTCCCTCTCTCTCTCTTTTAATGGTTATTTTTTTCTCTTTTTATGCTCATGGTTTAGATATTACTTTCCCTGTTATATTGTTGCAGCAACCTATGATGGGGATCGCTTTTTTACACTTCAGGAGGGTGTGAAGAAAGTAAGTTATGATAGACTCTACTGTAGCTTTAGGAATACCATTGATGACCTTTCCTCATGTTGAGCATGAAATAAGAGAAGATTCTTTTCGAGAAGCATGTCACATTGTTCTATTGGAAGCTTATAAATCTGTCATGTAAACTTAAATTTGACATGATTTCTAACAGGTCTCGAACATTTTGGACAGGCAACACCTTTACTGCTCACCATAGCTGTTATTGAGCTCAGTGATATAGCATTTGCAGTACGTTTTGCACGACTCAATTATGTTATATATGCATCAGGATGTTATTTACTTCACCTTTTTAGTTTATGGAAATGCTCATTCAACCTTTATTTTCTTGAACATGGTGCTAGGTTGATTCAATACCTGCCGTTTTTGGTGTTACAAGGGACCCTTTCATAGTAATTACGTCAAATTTTTTTGCCATTTTAGGTAACATACCCTTCTTCGAATTAACCTCTTGGATAAATGGATCCTAACAACATTGACATTGATTTTCTTCTTCTTTTCTTTACATCACTTCAATCATGAAGTAATTTGCCAACATTTGTTTCATCTAATGACTCACTCAAATATTAAATATGGGAACATTAGTGGCTAATGGGTTCAAGAGTTTTCGTAGTAGTTAAATAGAAAAGTTCTATCTTTTTCTTTTCTTGAAAAGGAAACATTAAATCAAAAGATCTATCGTGGAAGATGTGTCAGGATACTGTATTTATTGTTCATTTGTTTCCTTTAACAAGTTGAGAACTTTGGTATGTATCCAGTTGTTCATTAAATTTTTTGGAGATGCATAATGACCACCATTTTTGTGTGCTACAGGTTTGCGGTCCCTATTCATTCTTGTAGCTGATGGGATGTCAGAATTGGAGTACTTACAGGTAAAATTTTAGACGTAAAAAATGAAGAGCATGTCAAGTTCTATCATTCTTGTATCTCACTTTTCTCTTACCTGGTGGATGCTATAGTAAATGTTATTAATATTATTTTGTAGTCCTCAATTAGGTATAATCAACATTATTTCAAAATCTCATTTGTTACAATATTTTCTATTTCCTAGAGTTTTTACTATTTTTACATTCATCATTTTTTTTATTCTTTGCTACAATTTTTCTTATTTTACGTTCATAATTTTTTATTCTTTGCTCCAATATTCGCTATTTACTTTACAAATTAAAATAGTTTACACTTCAAACAAATACTATTTTAAATCAAACCAAAATAATCTATACCCCAAACATAAACTATTATTACCCAATTGTATTAACATATAACTATAATAACTAACTCCTGCTCCAAATGTCCCTTGAAAGTCTTAAAGCACGTCCACTTTAGGACTCGGTTGATTTAAATAAAATGGTGAAATTGAAAACTCAATTAAAAAATATTTTTGGTGATCATATAATTGTGGACAAATACTATGGCCGTACTGTGCAAGCCTTTTTGGTGTTTTCCAAGTCTTACAAATGGCTCAGTTATTGCTCTCCTATAAACGTGCACTGAAGGAAATTTTCTCCATATTTTCAATGTCCTTCCAGCCTTCCATTGGCGTTGTTCTAGCATTTATTGGGAGCAAGATGATCCTTGATTTCTTCGGTGAGCATGCTTTTGTCCATTTGAAATGTCAAATCTGTTATGACACCTATATACATTTTAAAATTCCAGTATTCATTGACCTCACTCTTCATGCAGGATTCCACGTTCCAACTGAGGCATCTCTTGGATTTGTCGCAATAAGTCTGAGCACTGGTGTTCTCTTGAGTCTATTGAAGAAGGCTGATTGATCAGAAAAACAGAAAGAGAGGGTGTTCGGCTTTAATCGAAGTAAGTTATTGCTTCTTCATTTTGGTAAAAAAGAAAAGGCCTATCAAGCTTCTAATTGAAAAATTAACAACTTAAGTGTACCGTTTCAAGCTTCTAAATAAAAAATTTAGGCTGTTTGGTAACCATTTTACTTTTAGTTTTTGAAAAGTAATCCTGTAGACACCCCTTAAATTTTTTGTTTTCTTATCTATTTTTTATCAATGTTTTAAAAAACCAAAGCCAAAATTTGAAAACTATGGCTTGTTTGGTAACCATTTCATTTTTCATTTTTTAAAAATTAAGCCTATATTTCCCCATTTTCTTGTACTCTTTTTCGTAAGTACAAGAGTGGAATTATTAGCCAAATCTAAAAACAAAGATAAACTTTTAAAAAATGGTTTACTTAATTTTCAATAGTCTGGTTTTTAAAAACATAGGTTGGAAGTACATAATGAAACAAGAAACTTAGAGGTGGAGGTGGAAGGAAAGGAGTGTCTGTAAGCTTAAAACTAAAAACCAAAAATCAAGGGTACAAAACGGGGCCTATAAAATTAGTTGAAACGTTTTTCTTTTCTTGAATTTGGTGTATTTAACTCTTATATTCAAGTCTAAAGATATGAGGAAGGGAGGCATAGAAATTATATGCAAATCATAGTAAGAACACTTGAGGAAACAGGGTTAACTCTTCAAAACTCAACCGCTCTTGAATGTGAATTGGTAGAGTAGGGAGGCATAGAAATTAGAGAGTGAAGCTTCTGATTCTGTCATTGTCAAAATGTTGGACGAAAAATAAACTAGAATAAAATTTAGAGCAAGTGTCCATAACTAAATTATTAAAGGTTAGTTTAGCTCAACAGTAATTGACATGACTCACCAACCTGGAGGTATAAAGTTCGATCTCTCATCTTAAGTTGTTATACTAAAAAAACTAACATTCTTTCTATTACTAAATGTTAGGATTTCCTACTTTCTAATCGTTATTTTTCATGATTGCCAGAATTGTTTGTTTAAAATTGTCATTTCACTATTGACTGGAGCCACGGTTATACTTGGGAAGAAAAAGATGATAGAGCCGTTCTGCTATCTACGAATCATGGAGGTTAGAAGAACCATTCTTTTAAGAACTCGTTGGTGGTTGTGCTGAGATGATGAATTTATTCTCCTTGTTCTTTTCTAGTAATTCCAAATCTCTCTCTCAGAACCTTTCTGTTGTAGATAAATGATTAGTAGCTCTAAATCTCTGCTTTTCACCGTTACATTCTTATGTCAAAGGTGAGTTATTGTCGTCCCTTTCTGCTACCCCCACCCCACTCCTCCCCCCAAAAAATATGTACAATAATTATTATAGTAATGAATGTAAAATATACTTTTAGTTCTTG

Coding sequence (CDS)

ATGTATGCATTCGTATTCGTAGTTATCCTCAATTGCCGTCCTTCTCCGCGCTCTTTGGTTCGATGCTCCAGTCGAATCGAGAGGGAAGGCGATCCGTCTACTGCAGAAGCCAATAGGACGTCTTCCGTCCGAGGAACGATTGAGGGGTCTGAAAGTAAAGTTTCTTCTATTAGAAATGTTGCTCTATGTGTTGCTACTGCCGTGGCATTTGGTATTGGGGTGGGTTTGAAAGATGGAGTTGGCAAGGCATCTGAATTTTTTGCCGGGTATCTTCTGGAGCAAAGTTTGTCAGTTGACAATCTCTTTGTCTTTGTTTTGATTTTCAAATACTTTAAAGTGCCAACGGAGTATCAGAATCGGGTGCTTACTTATGGTATTTCTGGTGCAATTGTCTTTCGTCTAACAATCATACTTCTGGGAGCAGCCACTCTGCAGGTAACTTCTCTTCCTGTTGTATTCCAGTTTGCTCATATAGTCTATCTGAGAATTGTATCTACTATTTCAGAGATTTGA

Protein sequence

MYAFVFVVILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGISGAIVFRLTIILLGAATLQVTSLPVVFQFAHIVYLRIVSTISEI
Homology
[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match: F4JZG9 (Thylakoid membrane protein TERC, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TERC PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.0e-35
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 0 

Query: 11  NCRPSPRSLVRCSSRIEREGD--------PSTAEANRTSSVRGT---------IEGSESK 70
           N R S    + CS  I++E +        P   + N T+S   +          +  E+ 
Sbjct: 54  NRRLSHLPPIACSRGIDQEDEEKESRELLPHKNDENATTSRSSSSVDSGGLKDYQQEETY 113

Query: 71  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 130
            +S + VALCV TAVAFGIG+GLK+GVGKASEFFAGY+LEQSLSVDNLFVFVL+FKYFKV
Sbjct: 114 KTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKV 173

Query: 131 PTEYQNRVLTYGISGAIVFRLTIILLGAATLQ 146
           P  YQN+VLTYGI+GAIVFR T+ILLG ATLQ
Sbjct: 174 PLMYQNKVLTYGIAGAIVFRFTLILLGTATLQ 205

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match: P96554 (Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus OX=34 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-12
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0 

Query: 61  ALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNR 120
           AL V+ A+ FG GV  K G     +F  GYL+E+SLSVDN+FVFV+IF   ++P  YQ+R
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQHR 107

Query: 121 VLTYGISGAIVFRLTIILLGAATL 145
           VL +GI  A+  R  +I  G A L
Sbjct: 108 VLFWGILSALALRAIMIFAGVAML 131

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match: Q92GA4 (Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=RC1219 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 67  AVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGI 126
           A  FGI V    G   A E++  +L+E+++S+DN+FV  +IF++FK+P +YQ+RVL +GI
Sbjct: 44  ACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPWQYQHRVLFFGI 103

Query: 127 SGAIVFRLTIILLGAATLQVTSLPVVFQFAHIVYLRIVSTIS 169
            G I+FR  +I  G        + ++ +FA ++Y+  V  I+
Sbjct: 104 IGVIIFRAVMIYGG--------IILINKFAWLLYIFAVILIA 137

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match: P60067 (Putative membrane-bound redox modulator Alx OS=Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01) OX=243265 GN=alx PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 74  VGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGISGAIVFR 133
           VG+     +   F  GYLLE++L+VDN+FV++++F YF +P   Q RVL YG+ GAIV R
Sbjct: 67  VGVAVANSQVMAFLTGYLLEKALAVDNVFVWLMLFSYFAIPANLQRRVLIYGVLGAIVLR 126

Query: 134 LTIILLGAATLQVTSLPVVFQFAHIVYL 162
             +I  G+         +V QF+ I+YL
Sbjct: 127 TVMIFAGSW--------LVSQFSWILYL 146

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match: Q52356 (Tellurium resistance protein TerC OS=Serratia marcescens OX=615 GN=terC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 0 

Query: 51  ESKVSSIRNVAL----CVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVL 110
           + K  S+++ AL     V  A+AF   + +  G   AS F  GY LE+ LSVDNLFV + 
Sbjct: 33  DDKPISLKSAALWSVFWVVVAMAFAGFLYIHHGAEVASLFVTGYALEKVLSVDNLFVMMA 92

Query: 111 IFKYFKVPTEYQNRVLTYGISGAIVFRLTIILLGAATLQVTSLPVVFQFAHIVYLRIVS 166
           IF +F VP  Y++RVL +GI GAIVFR   + +G      TSL  +  +  +V+  IV+
Sbjct: 93  IFSWFAVPDRYRHRVLYWGIIGAIVFRGIFVAIG------TSLLSLGPYVEVVFAIIVA 145

[Close]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match: XP_004142102.1 (thylakoid membrane protein TERC, chloroplastic [Cucumis sativus] >KGN54196.1 hypothetical protein Csa_018172 [Cucumis sativus])

HSP 1 Score: 263 bits (673), Expect = 9.06e-85
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA
Sbjct: 47  VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAIVFRLTIILLGAATLQ
Sbjct: 167 GAIVFRLTIILLGAATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match: XP_008447276.1 (PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >XP_008447284.1 PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >KAA0047314.1 thylakoid membrane protein TERC [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (649), Expect = 3.87e-81
Identity = 133/138 (96.38%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAI FRLTIILLG ATLQ
Sbjct: 167 GAIFFRLTIILLGTATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match: XP_038883780.1 (thylakoid membrane protein TERC, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 246 bits (629), Expect = 4.09e-78
Identity = 128/138 (92.75%), Postives = 131/138 (94.93%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC P+PRSL+RC SRIEREGDPSTAEANRTSSV GTIEG ESKVSS+RNVALCVATA
Sbjct: 47  VILNCHPAPRSLIRCGSRIEREGDPSTAEANRTSSVPGTIEGLESKVSSLRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDG GKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVP EYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGPGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPMEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAIVFRLTIILLG ATLQ
Sbjct: 167 GAIVFRLTIILLGTATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match: XP_022143940.1 (thylakoid membrane protein TERC, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 227 bits (579), Expect = 1.26e-70
Identity = 121/149 (81.21%), Postives = 128/149 (85.91%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 127
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

Query: 128 YQNRVLTYGISGAIVFRLTIILLGAATLQ 145
           YQNRVLTYGISGAIVFRLTIILLG ATLQ
Sbjct: 167 YQNRVLTYGISGAIVFRLTIILLGTATLQ 195

[Close]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match: XP_022143939.1 (thylakoid membrane protein TERC, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 227 bits (579), Expect = 1.98e-70
Identity = 121/149 (81.21%), Postives = 128/149 (85.91%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 127
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

Query: 128 YQNRVLTYGISGAIVFRLTIILLGAATLQ 145
           YQNRVLTYGISGAIVFRLTIILLG ATLQ
Sbjct: 167 YQNRVLTYGISGAIVFRLTIILLGTATLQ 195

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match: A0A0A0L220 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293060 PE=4 SV=1)

HSP 1 Score: 263 bits (673), Expect = 4.39e-85
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA
Sbjct: 47  VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAIVFRLTIILLGAATLQ
Sbjct: 167 GAIVFRLTIILLGAATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match: A0A1S3BGI3 (thylakoid membrane protein TERC, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489749 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 1.88e-81
Identity = 133/138 (96.38%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAI FRLTIILLG ATLQ
Sbjct: 167 GAIFFRLTIILLGTATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match: A0A5A7TWH1 (Thylakoid membrane protein TERC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001310 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 1.88e-81
Identity = 133/138 (96.38%), Postives = 133/138 (96.38%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 127
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQNRVLTYGIS 166

Query: 128 GAIVFRLTIILLGAATLQ 145
           GAI FRLTIILLG ATLQ
Sbjct: 167 GAIFFRLTIILLGTATLQ 184

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match: A0A6J1CQ88 (thylakoid membrane protein TERC, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013731 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 6.08e-71
Identity = 121/149 (81.21%), Postives = 128/149 (85.91%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 127
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

Query: 128 YQNRVLTYGISGAIVFRLTIILLGAATLQ 145
           YQNRVLTYGISGAIVFRLTIILLG ATLQ
Sbjct: 167 YQNRVLTYGISGAIVFRLTIILLGTATLQ 195

[Close]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match: A0A6J1CQT8 (thylakoid membrane protein TERC, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013731 PE=4 SV=1)

HSP 1 Score: 227 bits (579), Expect = 9.58e-71
Identity = 121/149 (81.21%), Postives = 128/149 (85.91%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 127
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

Query: 128 YQNRVLTYGISGAIVFRLTIILLGAATLQ 145
           YQNRVLTYGISGAIVFRLTIILLG ATLQ
Sbjct: 167 YQNRVLTYGISGAIVFRLTIILLGTATLQ 195

The following BLAST results are available for this feature:
BLAST of Cucsat.G13681.T26 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JZG98.0e-3557.24Thylakoid membrane protein TERC, chloroplastic OS=Arabidopsis thaliana OX=3702 G... [more]
P965541.5e-1248.81Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus OX=34 PE=3 SV=1[more]
Q92GA43.0e-1037.25Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-61... [more]
P600674.0e-1042.05Putative membrane-bound redox modulator Alx OS=Photorhabdus laumondii subsp. lau... [more]
Q523564.0e-1040.34Tellurium resistance protein TerC OS=Serratia marcescens OX=615 GN=terC PE=3 SV=... [more]
BLAST of Cucsat.G13681.T26 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142102.19.06e-85100.00thylakoid membrane protein TERC, chloroplastic [Cucumis sativus] >KGN54196.1 hyp... [more]
XP_008447276.13.87e-8196.38PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >XP_008... [more]
XP_038883780.14.09e-7892.75thylakoid membrane protein TERC, chloroplastic isoform X1 [Benincasa hispida][more]
XP_022143940.11.26e-7081.21thylakoid membrane protein TERC, chloroplastic isoform X2 [Momordica charantia][more]
XP_022143939.11.98e-7081.21thylakoid membrane protein TERC, chloroplastic isoform X1 [Momordica charantia][more]
BLAST of Cucsat.G13681.T26 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2204.39e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293060 PE=4 SV=1[more]
A0A1S3BGI31.88e-8196.38thylakoid membrane protein TERC, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5A7TWH11.88e-8196.38Thylakoid membrane protein TERC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A6J1CQ886.08e-7181.21thylakoid membrane protein TERC, chloroplastic isoform X2 OS=Momordica charantia... [more]
A0A6J1CQT89.58e-7181.21thylakoid membrane protein TERC, chloroplastic isoform X1 OS=Momordica charantia... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005496Integral membrane protein TerCPFAMPF03741TerCcoord: 87..152
e-value: 8.5E-17
score: 61.4
IPR022369Integral membrane protein TerC, riboswitch-linkedPANTHERPTHR30238:SF0THYLAKOID MEMBRANE PROTEIN TERC, CHLOROPLASTICcoord: 40..158
NoneNo IPR availablePANTHERPTHR30238MEMBRANE BOUND PREDICTED REDOX MODULATORcoord: 40..158

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G13681Cucsat.G13681gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T26.E1Cucsat.G13681.T26.E1exon
Cucsat.G13681.T26.E2Cucsat.G13681.T26.E2exon
Cucsat.G13681.T26.E3Cucsat.G13681.T26.E3exon
Cucsat.G13681.T26.E4Cucsat.G13681.T26.E4exon
Cucsat.G13681.T26.E5Cucsat.G13681.T26.E5exon
Cucsat.G13681.T26.E6Cucsat.G13681.T26.E6exon
Cucsat.G13681.T26.E7Cucsat.G13681.T26.E7exon
Cucsat.G13681.T26.E8Cucsat.G13681.T26.E8exon
Cucsat.G13681.T26.E9Cucsat.G13681.T26.E9exon
Cucsat.G13681.T26.E10Cucsat.G13681.T26.E10exon
Cucsat.G13681.T26.E11Cucsat.G13681.T26.E11exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T26.C5Cucsat.G13681.T26.C5CDS
Cucsat.G13681.T26.C4Cucsat.G13681.T26.C4CDS
Cucsat.G13681.T26.C3Cucsat.G13681.T26.C3CDS
Cucsat.G13681.T26.C2Cucsat.G13681.T26.C2CDS
Cucsat.G13681.T26.C1Cucsat.G13681.T26.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T26Cucsat.G13681.T26-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0090351 seedling development
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane