Cucsat.G13206.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G13206.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionmediator of RNA polymerase II transcription subunit 15a-like
Locationctg1838: 2203466 .. 2207782 (+)
RNA-Seq ExpressionCucsat.G13206.T3
SyntenyCucsat.G13206.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTTCGTCTCCCCCTAAACCCAAAAGAAGAAACTGCTTCTACTACTCACTTCTTTCAAACTCTCCGTTTTCCTCTTCTTTCCCTCTCTTTCCCTCTCTCCATCTCCATTCTATTTCTCACTCTTTTTCTCATATCCTTCTCTCTTCACTTCCTTCAATCACTCCATCCCTTGATTCTACCTTCCTCTCTGATTATGTAGGGTTTTTTTTTTTTTTCTTTTTTTTCTTTCTGTTTGCTTACTGGACAAGAAAGCTAGTATGGCTACTCCAACTGATTGGAGGACGGAAATAACTCAAGAAACTAGACAGCAAATTGTTCGTTCAATGTAATATTTCCTAAACTTGTACTCTGCTTTATTTATTTATTTATTTTAGACTTTTTAAGTGCTGCTTATTGATGTTTGATTACGATTACTTTGTTGCCTTTTTTTTTTCTAATTTCGTTGTTGAATTGAAAATTTCGTGCATTATTGCTTGAGTTTTACTCGATTTCCATTGATTTCTTGAATTATGAATTTGTGGATTTTATTGATAATAGTATGATATTGCAGATATATGATGTTGAAGGAACAGCCTTCTGAGTTGAATGTGAAACTAATTAGTGACCGTGCGAGGAAACATGAGATGAACTTGTTTAGTACTGCCAAATCTAAGGTATTATTAGTGAATTTTTCAATGTTTTCTAATATGAAACTGATGTTTTTCGTGCATTTGTGTTTTATTGTGTACTTTCCAATATTTGTGATCTAATCTGCTTATGCTTCTCAGGAAGAATATTTGTCTACTGGAACTGGAAAGATGATTAAGAGAGAAAATCACCAGGGGAGTTCAAGCGGTCAAGCAGTAGTGGTTTATCCGCAATATCATCAGCCAGCAGAGGCTAAGTCACTTTTGCTGCAACATATTCAGCGAACGCCACAGCTACATAGACAACATCCAAATGTGAGACAGGCACATCAACAATTTGCGATGCAGAATCAAAGCGGTGCTAGTCCACAAAATACATCAAATTCACAGTGCAGACCCCAGGGTTTCCCGAGACAAGATACTGGAATTCATCTGTCCTCAGAAATGTTCACGCAACATCCTAACTTTGTGAACTTGACCACTCAAGTTAAAAAGGTATTGAATTGTGTCTAGATGTGTAAATGGGCAGTTTGCTGGTACATCTAAATTAGATATATTGTGTTATGAAATTGAAACTGTATGTAACATAACAGGAAGTGGATAGCGAAGGTTTTATGGCCTCCAAATCCTCCGAGCAGCGTAAGCAACACTCCATGAGTGGAGCTTCTGCAGGTAAGTTTTTGTAGATGCTAAGCTTCAAATCACCTGCGATGATAATAACAACTAGCAGGAAATCTGGGAGGAAACTATTGTATTGGATTCAAACAATACTACAAAGTAGTCCGGAAACTATTGTATTGGATTCAATCAATACTACAAAGTAGTCTGGAAACTATTGTATTGGATTCAATCAATACTACAAAATAGTCCCGAAACTATTGTATTGTATTCAATCAATACTACAAAATAGTTCTTCAAGCCAAATAAGAGGGCTGTACTCTCCCCAATGAACACAGGTTCATACAAAACACATAAACAAATAAGATAACCAACCCTAACTAACATGTTGTCCATGTAGAATTTCCCTTTTTACCCCTCCTCTTATACACGGGTAATGGGTGGGCTAGTAGAGTTCCTATTTTCAAACACTATAATTTTTAGCCATATATAGATTGTGGATTTAATTTTAACAACTTGTATCTTTCATTTGCCTTTTGAATTTATGATGTTTTTAAGAAAGTGTTTAGATTCTTTTGTTTCTTAAAGTTCTTGTATTCTAAGAAATATATTTTTCTGTCACTTTTCTACTTGGCTTTTGATAGCTACGTTTGAAAAACAAAATACAATCTTTCTGGAAATTATTTTTTGATAAACTTTTTGAGAAATGTGTATTTGTGCAAACGAAATTATATGTTTTACCTCTAAAAATGAGAGCCGGCAAAATCATTATATAGTGAAGATGGATACTCTGCCTGCATGACTTATGTTTAGAAACATGGAGCTCAATCTACTTTATTAGCGAATATTTGGAACCATTACTGCGGTAGTCTGCTTATTTTTCTTTTTGTTACATAGATCCAGAAAGAATTCCAAATTCAGAAGTTTGGCATGATGCTGCTTTTGCTGAGGTAATTTTTAGTTATGAATATGAGTGAAAAATGGGAAAGGAGGTGGAAAAATATTGGCAGCCGTTGAAGATGACCAGGGTAAGAGTAACAAGGAAGAGAAAGGGAAAGAGAAATAGAAAAGAAAAAAAACAAATCAAGAAGACATTATATATATATTAATAAAGTGTTAAAGCCACCTTTTCCTTGCCAGATGGAACAGCTCAAGAAGACGTTCTTGCCTTATTTTATTAAGGCATATGAACCCTTTCGAAAGGTAATAAACTGACTTTAAATAAGTACTTCAGGGGAAACCATATTCATTGATCTTTATCCGACTTATCTCATGAAACTCTCTTCTGTCATATTTCTTATTATCCTTAAACTCTCTTCTGTCACATTTCTTAACGGTTCTTAATTTTGTAGGTTGTACACCAAGAGGGCCTACACAGGAGAGGGCTTGGGAAGACAATCGAAAGAATTCTGAGGTTTTTCCAATCGTCTAAGGAGAAAATCATTGCTTCTTACACCAAGGAGAAGTTTATTCGATGTTTGCAATATATTGAGCAAAGTGGGAACACAATTAAGAGCAATATCAATGTTGTTAATAAGCCGTCGTCCCTACATGATGGCCAGCCTGGCCTTAGTGGATCTCGCATAAACCATCCAGTTCAGCAAAGTGGTGATAATGTGAAACTCCATTGTCAATCAGTGATCCGAACTACAACTGGCTCTGGTAGTTCTTCCGTAGCACCACAAGAAATAGGATCCATAAGGTCAAAATTACATCCCCAATGGATTCATGGTTCAGGAAACACTCCATTTACTTATAGATCAGGAATCTCTTTGAATCCTCATTTGAACTCAAACTTTTCCCATGTTGCTGAGCGACCTCGTCCAACAAATCCTTGTACTTATCCATTGCATGGAAGAGCTTCTCCACCTCCATCTTCCTCTATAGTTGGACTTGAAAAAATCTCTCCAAATGTTACTTACCATTCAAGTTCGAACTTTCATTTCCGTCCACATTGTAACCCATATCAGTTACTTCATTCCAAAGCAGAAATGATCGCTGAACCTACTAGTCTTGGAATCAATGGGCAACTGTCAACGTATCAGGCTCATAATCGCTTACTTAAAGCGGTAAGTCTATGCAAGAATATCAAATGAAATGCATATTTCAAATATCAACTACTGACAGGAATGTGTTTGCATTTGTCCAATTATTTCAAATATCAACTGACAGAATGTGTTTGCATTTGTCCAATCTATTGGATTTCTCTAGGATGATAATTTCATTCTTCTTTTCCTTTGGCACTTACAATTAGTTTATTATGAGACATAACAAAATATGCAGGTTGGGTCATCATCAGAGGAAGCACTCAGAGCAGCTGTGTCGGGAATAACTTCAGTTGGGTATATGGAAGACGCGATAATAGATCCCCAGTGTCGTGCAAAGGTAACAAATTTAAGGTTGATAGACGGATTTGGTTCCTCAAATAATATGAAGCGCAAAATAAACGCAATGGCCTTAAACAACATACCATCGCCTAGCAGTGAGATTCTTGGATCTGAAGAAACAGTTACATCAAGAACAAAGAAACTCAAGAAACTGGTATGGCATCATCTTTATCTAGTCTCGTTGGAACTGTATTTCTATGCATTTTTCTTACAAATTTTCATTTCTCTACTGACAATCATGCAGTCTGATTCTTCCCTCTTAGAAGAAATGAGAAACATAAACAAGCAGTTCATCGAAACAGTCTTGGAACTAGATTTGGACGAGAACCTCAATCAACGATTAGCCAATGCGGGTACGGTTCTTCGATACTCCTATAGTGCTGTAAGTGATGGTACAAATTCTGTGAAACTGCCCGTGCTTACTATGAAGCTGCTTGTACCTCTTGATTATCCTGAAGACTATCCCGTATTTCTAAGCAAATTCGACTTGTCCTCCAGGTAACGACTGACTCTTGTATATGAGTAGTTTTCTTGTACCTTTCACTGAAGTTCTTTCATACATTTCTATAGCAACGTGGACGAAGAAAGTAGAAACCTGTCGAACGGTGCAATATCGATGTTACGTGCATTCCTTCGCACTGCTCCGGAATGTGTGTCTCTTGAAGATTATGCAAGGGCATGGGA

Coding sequence (CDS)

ATGGCTACTCCAACTGATTGGAGGACGGAAATAACTCAAGAAACTAGACAGCAAATTGTTCGTTCAATATATATGATGTTGAAGGAACAGCCTTCTGAGTTGAATGTGAAACTAATTAGTGACCGTGCGAGGAAACATGAGATGAACTTGTTTAGTACTGCCAAATCTAAGGAAGAATATTTGTCTACTGGAACTGGAAAGATGATTAAGAGAGAAAATCACCAGGGGAGTTCAAGCGGTCAAGCAGTAGTGGTTTATCCGCAATATCATCAGCCAGCAGAGGCTAAGTCACTTTTGCTGCAACATATTCAGCGAACGCCACAGCTACATAGACAACATCCAAATGTGAGACAGGCACATCAACAATTTGCGATGCAGAATCAAAGCGGTGCTAGTCCACAAAATACATCAAATTCACAGTGCAGACCCCAGGGTTTCCCGAGACAAGATACTGGAATTCATCTGTCCTCAGAAATGTTCACGCAACATCCTAACTTTGTGAACTTGACCACTCAAGTTAAAAAGGAAGTGGATAGCGAAGGTTTTATGGCCTCCAAATCCTCCGAGCAGCGTAAGCAACACTCCATGAGTGGAGCTTCTGCAGATCCAGAAAGAATTCCAAATTCAGAAGTTTGGCATGATGCTGCTTTTGCTGAGATGGAACAGCTCAAGAAGACGTTCTTGCCTTATTTTATTAAGGCATATGAACCCTTTCGAAAGGTAATAAACTGA

Protein sequence

MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEPFRKVIN
Homology
[Close]
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match: XP_011652173.1 (uncharacterized protein LOC105434992 [Cucumis sativus] >KAE8651172.1 hypothetical protein Csa_002482 [Cucumis sativus])

HSP 1 Score: 471 bits (1212), Expect = 2.99e-160
Identity = 241/243 (99.18%), Postives = 243/243 (100.00%), Query Frame = 0 

Query: 1   MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY 60
           MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY
Sbjct: 1   MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY 60

Query: 61  LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH 120
           LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH
Sbjct: 61  LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH 120

Query: 121 QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE 180
           QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE
Sbjct: 121 QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE 180

Query: 181 GFMASKSSEQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEPFRK 240
           GFMASKSSEQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEPFRK
Sbjct: 181 GFMASKSSEQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEPFRK 240

Query: 241 VIN 243
           V++
Sbjct: 241 VVH 243

[Close]
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match: XP_008443239.1 (PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443241.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443242.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_016899629.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >ADN33883.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0053897.1 putative tartrate dehydrogenase/decarboxylase ttuC [Cucumis melo var. makuwa] >TYK25509.1 putative tartrate dehydrogenase/decarboxylase ttuC [Cucumis melo var. makuwa])

HSP 1 Score: 298 bits (764), Expect = 1.20e-92
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 0 

Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQHSMSGAS-ADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEP 240
           SEGF ASKS  Q +QH    +  A  ERIP+SEV HDAAFAEMEQLKKTFLP  IKAYEP
Sbjct: 187 SEGFKASKSLHQHEQHKQQHSMRASAERIPSSEVLHDAAFAEMEQLKKTFLPLIIKAYEP 237

[Close]
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match: XP_038903080.1 (probable mediator of RNA polymerase II transcription subunit 15c isoform X1 [Benincasa hispida])

HSP 1 Score: 256 bits (653), Expect = 4.20e-76
Identity = 158/260 (60.77%), Postives = 174/260 (66.92%), Query Frame = 0 

Query: 2   ATPTDWRTEITQETRQQIVRSIYMMLKEQPSE-----LNVKLISDRARKHEMNLFSTAKS 61
           AT TDWRTEIT ETR Q  R I MML EQ S      +N+K IS+ AR+HEM LFS AKS
Sbjct: 8   ATATDWRTEITNETRLQKFRLICMMLNEQWSAHHADGMNMKAISELAREHEMELFSMAKS 67

Query: 62  KEEYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNV 121
           K++YL+ GT KM +RENH GSSS Q  V  PQYHQ AE  SLL QHIQ T QLHRQ+ NV
Sbjct: 68  KDDYLNAGTRKMNRRENHHGSSSTQVAVPNPQYHQSAEPNSLLRQHIQPTTQLHRQNLNV 127

Query: 122 RQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------T 181
            Q HQQF M NQ   SPQNT NSQ     F R+D GIH S EMFTQHPN VNL      T
Sbjct: 128 GQTHQQFGMHNQRHVSPQNTLNSQ-----FQRRDFGIHPSPEMFTQHPNLVNLQPNENLT 187

Query: 182 TQVKKEVDSEGFMASKSS-------EQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQL 241
           TQVK+EV+ EGF ASKSS       EQ KQ    GASA PE IP SE WHD AFAEME+L
Sbjct: 188 TQVKEEVNGEGFQASKSSHQHHTAIEQYKQQQSMGASAVPEEIPTSEDWHDVAFAEMERL 247

Query: 242 KKTFLPYFIKAYEPFRKVIN 243
           KKT+LP   KA E   +V+ 
Sbjct: 248 KKTYLPLLEKACELSLQVVQ 262

[Close]
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match: XP_038903081.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Benincasa hispida])

HSP 1 Score: 229 bits (585), Expect = 1.88e-66
Identity = 142/237 (59.92%), Postives = 158/237 (66.67%), Query Frame = 0 

Query: 25  MMLKEQPSE-----LNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSS 84
           MML EQ S      +N+K IS+ AR+HEM LFS AKSK++YL+ GT KM +RENH GSSS
Sbjct: 1   MMLNEQWSAHHADGMNMKAISELAREHEMELFSMAKSKDDYLNAGTRKMNRRENHHGSSS 60

Query: 85  GQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNS 144
            Q  V  PQYHQ AE  SLL QHIQ T QLHRQ+ NV Q HQQF M NQ   SPQNT NS
Sbjct: 61  TQVAVPNPQYHQSAEPNSLLRQHIQPTTQLHRQNLNVGQTHQQFGMHNQRHVSPQNTLNS 120

Query: 145 QCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------TTQVKKEVDSEGFMASKSS----- 204
           Q     F R+D GIH S EMFTQHPN VNL      TTQVK+EV+ EGF ASKSS     
Sbjct: 121 Q-----FQRRDFGIHPSPEMFTQHPNLVNLQPNENLTTQVKEEVNGEGFQASKSSHQHHT 180

Query: 205 --EQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEPFRKVIN 243
             EQ KQ    GASA PE IP SE WHD AFAEME+LKKT+LP   KA E   +V+ 
Sbjct: 181 AIEQYKQQQSMGASAVPEEIPTSEDWHDVAFAEMERLKKTYLPLLEKACELSLQVVQ 232

[Close]
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match: XP_023528462.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (415), Expect = 1.38e-42
Identity = 120/270 (44.44%), Postives = 144/270 (53.33%), Query Frame = 0 

Query: 1   MATPTDWRTEITQETRQQIVRSIYMMLKE-----QPSELNVKLISDRARKHEMNLFSTAK 60
           +AT TDW+ EI   TRQ+ VRSIY MLKE      P+ ++ + I++ A ++E   F  AK
Sbjct: 7   LATATDWKAEIKNATRQEAVRSIYAMLKEGVSSHYPNGMSSERIANLAIEYEKRFFKNAK 66

Query: 61  SKEEYLSTGTGKMIKRENHQGSSSG------------------QAVVVYPQYHQPAEAKS 120
           ++E YL+  TGKM     H+ +SS                   Q  V  P Y QPA   S
Sbjct: 67  TEEAYLNAVTGKMRSENRHESASSRVRPAFVIQPPPQMSNQPHQRAVPNPLYQQPAVLNS 126

Query: 121 LLLQHIQRTP-----QLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTG 180
           L  QH Q+       QL RQ  NVRQ HQQ  M NQS  SPQ   NS C PQG       
Sbjct: 127 LPQQHTQQLRPKPHGQLQRQKLNVRQTHQQIGMHNQSFVSPQKALNSPCGPQG------- 186

Query: 181 IHLSSEMFTQHPNFVNL------TTQVKKEVDSEGFMASKSS-------EQRKQHSMSGA 229
             L S +FTQ+PN +NL      TTQVK+ V  E F ASK S       EQ+KQH   GA
Sbjct: 187 --LVSPIFTQNPNVLNLQPNENLTTQVKEGVIGEAFWASKVSHQQRPAIEQQKQHQSMGA 246

[Close]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match: A0A0A0LCA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G819850 PE=4 SV=1)

HSP 1 Score: 380 bits (975), Expect = 4.71e-132
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0 

Query: 25  MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV 84
           MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV
Sbjct: 1   MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV 60

Query: 85  VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ 144
           VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ
Sbjct: 61  VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ 120

Query: 145 GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASADPE 204
           GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASADPE
Sbjct: 121 GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASADPE 180

Query: 205 RIPNSEVWHDAAFAEM 220
           RIPNSEVWHDAAFAE+
Sbjct: 181 RIPNSEVWHDAAFAEV 196

[Close]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match: A0A1S4DUH4 (uncharacterized protein LOC103486878 OS=Cucumis melo OX=3656 GN=LOC103486878 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 5.82e-93
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 0 

Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQHSMSGAS-ADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEP 240
           SEGF ASKS  Q +QH    +  A  ERIP+SEV HDAAFAEMEQLKKTFLP  IKAYEP
Sbjct: 187 SEGFKASKSLHQHEQHKQQHSMRASAERIPSSEVLHDAAFAEMEQLKKTFLPLIIKAYEP 237

[Close]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match: A0A5A7UH89 (Putative tartrate dehydrogenase/decarboxylase ttuC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006580 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 5.82e-93
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 0 

Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQHSMSGAS-ADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEP 240
           SEGF ASKS  Q +QH    +  A  ERIP+SEV HDAAFAEMEQLKKTFLP  IKAYEP
Sbjct: 187 SEGFKASKSLHQHEQHKQQHSMRASAERIPSSEVLHDAAFAEMEQLKKTFLPLIIKAYEP 237

[Close]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match: E5GBP1 (KIX_2 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 5.82e-93
Identity = 169/244 (69.26%), Postives = 188/244 (77.05%), Query Frame = 0 

Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQHSMSGAS-ADPERIPNSEVWHDAAFAEMEQLKKTFLPYFIKAYEP 240
           SEGF ASKS  Q +QH    +  A  ERIP+SEV HDAAFAEMEQLKKTFLP  IKAYEP
Sbjct: 187 SEGFKASKSLHQHEQHKQQHSMRASAERIPSSEVLHDAAFAEMEQLKKTFLPLIIKAYEP 237

[Close]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match: A0A6J1J6S4 (uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.16e-34
Identity = 109/247 (44.13%), Postives = 127/247 (51.42%), Query Frame = 0 

Query: 31  PSELNVKLISDRARKHEMNLFSTAKSK-------EEYLSTGTGKMIKRENHQGSSSG--- 90
           P+  + + I++ A ++E  LF  AKS+       E YL+  TGKM + EN   S+S    
Sbjct: 11  PNGTSSERIANLAIEYEKRLFKNAKSEQSAYASQEAYLNAVTGKMSRSENRHESASSRVR 70

Query: 91  ----------------QAVVVYPQYHQPAEAKSLLLQHIQRTP-----QLHRQHPNVRQA 150
                           Q  V  P Y QPA   SLL QH Q+       QL RQ  NVRQ 
Sbjct: 71  PAFVIQPPPQMSNQPHQRAVPNPLYQQPAVPNSLLQQHTQQLRPKPHGQLQRQKLNVRQT 130

Query: 151 HQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------TTQV 210
           HQQ  M NQS  SPQN  NS C PQG         L S +FTQ+PN +NL      TTQV
Sbjct: 131 HQQIGMHNQSFVSPQNALNSPCGPQG---------LVSSIFTQNPNVLNLQPNENLTTQV 190

Query: 211 KKEVDSEGFMASKSS-------EQRKQHSMSGASADPERIPNSEVWHDAAFAEMEQLKKT 233
           K+ V  E F ASK S       EQ KQH   GASA P   PNSE WHD AFAEMEQLKK 
Sbjct: 191 KEGVIGEAFWASKVSHQHRPAIEQHKQHQSMGASAVPNGAPNSEDWHDLAFAEMEQLKKL 248

The following BLAST results are available for this feature:
BLAST of Cucsat.G13206.T3 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G13206.T3 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652173.12.99e-16099.18uncharacterized protein LOC105434992 [Cucumis sativus] >KAE8651172.1 hypothetica... [more]
XP_008443239.11.20e-9269.26PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443241.1 P... [more]
XP_038903080.14.20e-7660.77probable mediator of RNA polymerase II transcription subunit 15c isoform X1 [Ben... [more]
XP_038903081.11.88e-6659.92mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Beninca... [more]
XP_023528462.11.38e-4244.44mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
BLAST of Cucsat.G13206.T3 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCA94.71e-13299.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G819850 PE=4 SV=1[more]
A0A1S4DUH45.82e-9369.26uncharacterized protein LOC103486878 OS=Cucumis melo OX=3656 GN=LOC103486878 PE=... [more]
A0A5A7UH895.82e-9369.26Putative tartrate dehydrogenase/decarboxylase ttuC OS=Cucumis melo var. makuwa O... [more]
E5GBP15.82e-9369.26KIX_2 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A6J1J6S41.16e-3444.13uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 3..79
e-value: 3.0E-9
score: 38.8
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILY47040Kix domain of CBP (creb binding protein)coord: 5..70
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 5..80
e-value: 1.0E-9
score: 38.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..151

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G13206Cucsat.G13206gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13206.T3.E1Cucsat.G13206.T3.E1exon
Cucsat.G13206.T3.E2Cucsat.G13206.T3.E2exon
Cucsat.G13206.T3.E3Cucsat.G13206.T3.E3exon
Cucsat.G13206.T3.E4Cucsat.G13206.T3.E4exon
Cucsat.G13206.T3.E5Cucsat.G13206.T3.E5exon
Cucsat.G13206.T3.E6Cucsat.G13206.T3.E6exon
Cucsat.G13206.T3.E7Cucsat.G13206.T3.E7exon
Cucsat.G13206.T3.E8Cucsat.G13206.T3.E8exon
Cucsat.G13206.T3.E9Cucsat.G13206.T3.E9exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13206.T3.C1Cucsat.G13206.T3.C1CDS
Cucsat.G13206.T3.C2Cucsat.G13206.T3.C2CDS
Cucsat.G13206.T3.C3Cucsat.G13206.T3.C3CDS
Cucsat.G13206.T3.C4Cucsat.G13206.T3.C4CDS
Cucsat.G13206.T3.C5Cucsat.G13206.T3.C5CDS
Cucsat.G13206.T3.C6Cucsat.G13206.T3.C6CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G13206.T3Cucsat.G13206.T3-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity