Cucsat.G13197.T8 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13197.T8
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	ctg1838: 2048443 .. 2059792 (+)
RNA-Seq Expression	Cucsat.G13197.T8
Synteny	Cucsat.G13197.T8

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATGATGGTCAGAAAAATAGAACATAAAATCTAACGGACCAAAGAGCACATTATGGGCACAATTCTGGCCTTCTTCTTGTTTTCAAGTTCTAGGTGAGCACAATACATGTACGATTTCATCGATGAGGTATGCAATTTTATTTGAATCCCCAATTTTTCTTTCAAAACCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAAAGATGGAGAAAGCCAATAGTGAACGCTCAAACTCGGTTAGAAGACAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCAAAAAATTTAGGGTCATCCTCAAACTCTACGAGCTCATGAACAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATTTGTTCGACTTATTTCCTCATCCGGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAACGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTAATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATAAGAATGGAGCTATTGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGCGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGTGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCATATGAGAAGAGACAAGGCTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTACTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTGGAGCGACTTGTCCATTTTAGGCGTGATTTCGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAATATTCTACATATCAACCAAGGGGACCACCCAAATTGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGTCGCCGACACACGAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAACCGAAAATGGAGACTGGCTATCTAAAAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTCGATTGAGGGATGTGGTTCAAATATATCGTAAAATTGATGGTTTGTGCATTGTTTAAGGGTGAGTGAAGAAGGAACTGTGTTCATGGTAGAAGCAAATTGTTTGTCTGATGATGTTTGAATGAATCCACCCACTCAAGGGGAACAAAGAAACCAGCCTTTAAGGTTATTTCTTTAAACTTCCATTATTCTTTTTTTAAAAAAAAAAAAAATCTATTTGAGGCTCTTGAAAATTTGAAAATATAAGCAATTTCAAAACTATGTGCTGTAATTGACTGAAAGCTCATTTCACCATTTCAAGAATCACACTAACTCACTTCGAATCATTACTTTGTTTGGTGATAAAGAAAATACTTTTTCCTTTGTTGTCATATTTTTATCTAGCTTCCTTCATACTTCGTTTGATTATGTAAATTAAGTAGAATGGCATGAGGTTATGAAAATTTGAAACTCTTCTTTTCTCGAGTGAATGGTATAAAAGGACTCCAATACTTATACTGCATCCGTTGCTGTCTGCATTGACTTTATTTTTACAATTGAAGCTTCCAGCATATTGTTTATTGTTGCGTTGAACAATTGTATTCACTTTATATGGAACCCCTTGATATAAAATGAATCCTCGAAATGAAGATGCGTTCTATTTCTTTATTCATTGACTGTTGCTGGTTTGATTGTTCTAATGTTTGAGTTTTCATTGCTGAACCGATTTAAATATGCTCTGTTCTTGTTCTTTTGGCTTAACTAGTTATGGCCAGAACTTCAGACATGTTACTCACGTAGCCTTTGTTTCATATTTCTTGATACCTTAATTTGCTTGTGCTACTATTTGGGAGCACTTTGCTAAAGTATTTTTTTTTTTTAAATGGTTAAAAGCACCCTTTTTTTAAGAAAAAAGCATTCTTAAAACATTCTCAAATGGGGACCCTTTTAAGGTTTTCGTGATGGAGAATGGTTGTGTCTTTTGTCCATGTTAGTTTTATCTCTACTAACATAAATGGTAAAACCAACAGACAACACTGAAGTTCTTGCTGCTGCTTAAGAGCCGGGCTTTAACAACTATTCTTGTAGGACTCGAGCTTGTATGAAGCAGCATACCCATGGACAAAGCTGGCTGATCTAAAAAGCATATGGAGGTAACCACTCTTCAAAACTGACACTGGTTTCAAAAATAAAGCAATCGGGAGACCACAAATTCGAGACCCTTTTTTTCCTTTTCTTTCTCTGGATTTGAAACCAAGCACCCATTAGGAAAAATAAAAGAATATACAAGAACCTACAAAAAAAGGACTCCAATCCAAAAAAAATCTATTAACCTGTCCATGAAGACACATTAAACCTCACAGCCACCCAGACCTCCCCAAAAGACTTCTCCATCCCTCTAAAACTTTTACTGTTCCTCTCAAGTCACACTCTAAAAGATAGCACATTGACAAGTCTACCAAAAAACCTCTTCCTTTTATCTTGATAGGAGGACAATGAATTCGACCCTTTTTATTTCACCTTTATTTGAATGGTAGCAAGTCATCTCTGGATTACGAGCTGGAGTGAAGTTTGGATGCAGAAAGCCATGTCAATGAAAATGAAGTTTGGATGCAGAAAGCCTATTGAGGAATGCAGGTGGACAAAAAGTCTTTTGACACTCCAAGAAATTTGGTTATTTTGTTTGAGACAAACGTGGGCAACTGAATAGAAACAACCAGAAGGAATAGTGTTGTATGATGAAATGATGAACTTGTTGAAAAAAGGACTACAAGTTTCTTGAGCCTGCTTCCCTCAATCAAACCATCACATTGTCTTCAATTCAAGGGATTTACTATGAGGATCAAAGGAAAAGGACATGCTTCTGTTTTCTTCACTTGCATTATGTTTGATGCTCTTCAGATTATAATAAAGAAGAGGTATGTGCTGTTCAACTTTAACTGTATAAGTTTCTTTCTATGCTATGGCTTAATGGTGAAGGGAGCTTTTTAGTTATATCTGGTATGTTTGGAAATATTGATACAAGAATCTCGTCTTCTTAAATTTGGTGATTTTCTATCCTATTCTGATCTCTCCCATATGGCTGAAAATCAAATCTTTTGTCCTATTTATGGTTAGTTGGGAGCTTGATATATGTGGCTTTAGAGGAATAGATGCAGATATGAGACACGAATACAACATGAACACAATGACCCATCATTTTTTATAAAACCTAGGACACGAAAAAGACACATTTATTAAACCCTAAATTTTCAAAAATATATATTGTTTTTGTATCGTAAGAAAATTCAAAGTGAATGAGTTGATGCATTTATATACTTAAAAATTAGTTCGGTGTAATTCACACTCAAAATATATTTTATTGTCATATAGGAGTCTTTTTAGTCTACTTAACAAGTGTTCAATGCATGTCTAACACATTTGGCTCTAGAAATCGTTATTTGTCCAATAAATGGTGGATATGAACACACTAGCCAAACTACAAGTAAAAGAATGTGTGCTTCTCAGTATGTGATTTATACTCAAAGTTGAAATTAGGGTGCTTTTGTAAATTTGCATTGTCTTATATGAGAATGAAGGGATGTACAATATTCACTAGTTCATATTTGTATTTAGTAGATGAAATCAAGCTTAAGAGTACTTTCGTAAAACCAAAAACTAGAAGAAGAAAGTTCAGGTGATTATCCGATAAAATTAGTCTTGGTTAACCTGAAAAAAACAAAATCAAAAGAAGAGAGCAAGGAATCATGTCATCGATAATGATGGACTTGGGTAGGTTATACATAATGGCTCTCTAATCAAAAGATAGATCGTAAAGCTATGGGTGGGAAAGTTCATTCATTCCCTACTGAAGTAATGAAGTCTTAGAATGATATTTGTTTGTTGTTTGTTTACAAACAATTGGTTGAAATCAGAAGCTCATGGATATCTTTTAATAGGAGATGATTGAAAATCTAAATAGGAATCAAATATATTATTATCATAATATATCATTTCCATATTTCAAACTAACTAAAATGCATGCATGGTATATTTCTCAACATTTTCAAAAACACACTTAAAAATCAGTCTCACTTACATCATGTTGTCGTGACTACCATCGATCAACTCTAGCTACTACCGTTGGCTGCCACCTACATCCAATTCAGCCAACTTTGATGACCTCTACCTAGAAGTCAACTCAATCACCGTTGTTTTAAATTATTAGTTTATATAATCATCTTTTATAAAAAATTGAAATTACAGAAAATACTTTTAGTATCTAACAAATTACACAAGTTTTATTTGAATAGGAAAGACAAGTTTTATTTGAATAGGAAAGAGTTGTCAAATACATGAGTGTTCTTATTTAAAACTTTTTTTCTTTCAAATCCATTCAAATAGATTGCACATTCCATGTAAATACAAAAAATAGAAAGTGATTTCATTTGAATTACTTTTTTTAATACGCATATGAATCATGCCTATACTTAAAAAAAAAAAAAGAATAAGAATAGTATGACATATGAATCATGCCTATATTTCAAAAAGAAGAAAAAAAAAGAATAGTCTGACACATGCTTTCTTTCCTAGATTACTAAACTATGTTCTCCATCTTATTTTAAAATATATAAAAGGACAGATTGATAAAGTATTTAGTGAGAAATAAATGAACTTAAAGCATATGATATCAAATATTTGACTTTAATTTAACTTAACTCATAAAAAGGGGGAAAAAGAAATTCCAATTTTCGAATTTTGAGAAAAAAGAAAGGAAACGAACAAAAGGTAAACGAACAATGGACAGTCTTACTAGTCATCAGCTACATCGGCTTCTGTGAAAATTCTGCCTGATTCTCGCCGGCGACAGCTGAAATAAACAATCACCATTTTCCTCCGTTTTATTATCTTTAAAAACCTAGTGCTCAGCTCTGTTTTGCAAAACTTCCTCTCCTTCAGTTCTTTTAGCTTTCTCATCGTCCACGACGGCGATGGTTCCCTGTGGCCTCACTCTTTCTCTGAAACCTCCTACCCTCTGTACTCGTATCAGTTTTAATGGAGGACCCACTTCAGCTTTCGCCCTCCAAGCTCCAATTCTTGGAACCCTAGTTCAAATGAAGGGGACTCGTGTTTGTTCTTTTCGCCATAACCATCGATTGGAGTTTAACGATGTGGGTCGGCGTCAAAGGCAATGTGGGCCGCTGAGGTTTACGGATTTTCGGATTTCAGCATCCTCTGGTGATGGCTCTGGCGATGGGTTTGGGTCTGGAGCTGGCGATGGTGGATATGGAGGTTATGGTCATGAAAATTCTGGAGGCGGTGAAGGGGATAGTGGCAAAGGCGGGAATAACTGGTCCTTCTTGTCTTGGTAATGTATCTCAGTATAATCTATCTCTTTTTCGTTTGTTAATTTAAATATCCTAATCTTCGCATGTATTTAAGCCTTTAAATTAGTTAGCGAAGATGTTTCTAACACTTGCTCAACTGATATTTCGGATTGGCAATTGTAATTCACGTATGTTCCCTTAACAAATGGATAAACTTAAGAAGAGATAAACAAAGGTTGGATTGTGGGTGAGTGAGGAAATGTTAAGGATATTACAAGCTTGTTCGTAAGTTTATTTGAGTTTGGTTACAAATAGAGCAAACGGGAGAGATTGCCATTCAAAGGGTTGTATTCTTCATTTTCTCTCAATGAAATTTGTCTTTTATCAAAAGAAAATCTAGTTTAAGTTCCTTCTATCATCTATACTTTCCAATTCTACCCTAATAAATTAGATATTTATACTGTTCCAATCAGTGCATTAACGTCCTTCTTGGCGACAGGGTTTCAAAGTGCAGGAATCTGCATTTCTTTTCTTAATATAAATCACCTTATCTAGCCTTCAATCATCGATACATAACCCGGTGATGTTTGGTCTTTGGTGAGGTTTCTTGTTTCTATGTGGGCTTTGGTTTCATTTTTATTTTTTTGTAATTATTCCTTAGGTGACATTTTACGTAGTGCGATCTTTTGTGGGGTCAATTTTTTGTATGTCCTTTTATTCTTTTATTCTTATTCTTTTATTCTTATTCTTTCTCAGCTATAGCTGTTTTTTCTGTTGAAAAAAAATTCATACATACTTGCCGATACTAAATACTACCCTAATAGGTATTTCATACCAATCCCTATCAGGGCACAATTGTCACCAATTCCTAGTCATAGTCATAGATAGACTTCTGTGGATGAGTCGTGATTGGAATATATTATGGGAGACTGGTTTTGCATGAGCCATGAGGACAACCTCCAATCGTAATTGAATGCATTTGTTTGCACTCCATGGTAAATTCTTTGCCAAAGTTGGACAAAGCCAAAATTGAAATTATACTCATTTTTGGAATGACTTCAGAAAAGATGGTAGTTGAATGAAGTTTATCTACCTTCATCAATGACAAGGATGGGAAACTTAATTGGCATAGTCTTTCAATTTACTCCAAATAATTGCCTTCTGTTTTTTTCTTCAGTTGGGTTTGGGAATGGAATTTTTTTTGGCTGGTGAGGAATTCTCATTTGAGATACGGTTAGGGTTAGATATTGGAAAGATCTCTCAGTTACCATGAGATGGGCAAAAATGCACTCAGCTTCTTTTTTTTGTATGCGCTTTTTTTAAATGGAAACAAACTTTTCATTGATTTAATGAAAAGAGATTGTTGCTCAAATTACAAGGAGACATAGTGGTCATAGAATTCATTTGGAAGCTTGTGTGTGTGTCGTTGTGATTATATATTTATTACTATTTATCTAATTATTTTTCATTTTAAGTAGTACAAATAAACAAAAAACGAGAATATTTTCCCGCAAAAATCAAACTTCCAAATGGAGATTTCTGGACCTTGACCCAATTCCCCAAATCAAACAATGAAGTGGGTCAGAGATAAAATATTTCAGCATGATTAGAGGTGGAGATTGGATATCTTATCCCACCCCATCTTTCTCCAACACCATTGCATTGTCATGTGTTCACTGTGAAGGCAGATTGAAATGCTCAGAATAGTCCTTTCAGAGTTGATTGCCGGCCTCCCTAATTGCAGGATGAACAAAATAGTCATGCTTTACTCTAAGGATTATTGGATGGTTATGCTATACTCTAGATTTCATCCTTTCCTCTTGCATATGATTGGCATCATGGCCCATCAGATGATGGATGGATGATAAGTATGAGTCTGCTTCATAAGAGTGAGGTGATCAGACTTGGAAATTTTAGAATACTGCTTTCAGAACACATTTTCAAGACCATAATTTTCCTGTAAAAAAACCATATTTTATCACTAGTGCAATTATTCCAAGGACAAAACATATCCTGTTTGTTTACTTGTGCTGTGTTTTAACATTTGTCACTTGTAATTTTGAGTGTCCTAGTTGCTTTCTATTTGATTTTCAGCAGAATGTCAGTCTGTGAGGTAATGGTACCTAGTAAGTTGGAAATTGATTCAAAATCTCGTCTTTTCTGAGTTTCCTCTTAGCTTCTATTTACAAGATTTATTTGGAAACAAGTTTTCAACTCCTCATCTGGTTTTCTTTTTTTTTTTTATTGTCAATTTTGTTTGAAGGGGTAAAAACTTAATTTTTATTATTTCAGGTATTTGACTCTTCTTGCAAAATATCCTGCTTTGGTGAAATCTGTAACATCTGGGATACTAAATGCTCTGGGAGATTTAATTTGCCAGGTTTGCCTCCTAAAATATTTCTCTTGGAATCTGTGGACTTTCTAAGTAATTTTCAATGTTGGCTTTGTTGAAGATTTTGTTTAATTATTTTCGGAAGTGGTGATAGACTGATAGTCATGAGTTTTTGAGACTCATGTAGCTTGATAAAGACGTGTACTCTGAATTTCACAGCAAATTAATGACGGCACTTTCAAAAATTGTTCATAATGAATAAAATTCGAGATGGTGTTATTAGTTTAAAATTTGGATGTGGGAGTATTAGTTGGAATACCTGTAAAATTATTTTTGCAAACCCACATTACAAGACGTTGATTCAATTATATTAATGGTTGGTTTAATTACAAGTTAAGTTTTTGAACTTTTAGGTTGTGTCTAATAGGTCTCCGCCTTCAAAAAAATGTTTTGTAAAATAGGTTGTTTAATTTTCACTTTTGTGTCTAATAGGTAGTTGATCTTTAAAAGATGTATGGTTAATAGGTCTTCAATTTTGTGTAGAAACGCTTTATAGTCCAGCCAGATAAACAAAAACTAGAAAGTTCAAACTTCAAGGACTAAATTTGTTGTTTAACCTAAATTGTATTTTCTGCTAACTTACTCTAATAAAAAAAAAAAAAAGTTCTGTACACTGCCTTGTGCTTCAGCTGCTTAATAATTTGTTTCTATTGTAATAACTATTGAACTAAATGCTTAACATCTTCACCTAGATTGTTTTTGAAGAAGCACCATCAGCAGACCTGAGAAGAACGTTCAGATTTTCTCTTTTGGGGCTTGTGTTAGTCGGTCCCGCATTGCATTTTTGGTATTCCTTCAAGACCCTTCTTACTTCTCTTACTTCTCTTACAAATTCAGAGCTATTTGATACGTGATTAGGAATGAAGACTCATTTGAAGTTACCTGTTAAAATCCTGAAGATGTTACACTATCTTTTAAAAAAGTCAAATTGTTGGTTCAACTCTCTTAAGGGTTAAAGCCCATTTTTATGTAGGCCATTGAATCATTCATTCATGTAAATGTGAAATAAACCAATCTTGTGTTGCTTTGAATGGATAATGCTCATAGACATGCCATACATCAATCTGAAACTCAAGATGAACTGTAATTTGTAATCCTTTTTCGAACCATTTTCAGTTTCTTGAATCCTTCTAAAGTAATGTATGTAATCGTATAGGTACTTGTATCTTAGTCAGTTGGTGACCTTGCCAGGGGCCTCAGGTGCATTCGTCCGTCTACTTCTCGATCAGGTAATTCATTTCATTACAAGAGCGATTACATGTTCTTAAAAAGTAGTTTAACCTGAAGTACTGTATCTAAATGTAATGTTAACAATTGCAGTTCATTTTTACTCCGGTATTCATTGGAGTCTTTCTAAGTGGATTATTAACACTAGAAGGGCGGCCATCAGATATTATTCCTAAGCTTCAGCAGGTGCCATTCAAAACATTTTCTGCTCCAACAAGAGAACAACTTTTAATTTAATGGGCTTTTCAGCCTTATACTTCATAGTTCTCTTATCTTATTTATTTTTTTGATAACTTTTCTTTTTGCCTTTTAGGAGTGGTTTTCTTCTGTTGTTGCTAATTGGAAACTCTGGATACCTTTCCAGTTTCTCAATTTCAGATTTGTTCCGCAGCAATTCCAGGTATGCCTTATTCCAATTGTAGCTTCTCTACCATTTGATTGAGTTAATATTTCAAGTAGTAATATATGTTCTTGTTTATTAAAACCACTGCATAAATGCATAAATGCACTGATGCTATTTTCTCTATCTAAATCAGAATACACTGCCTTTGTTAATTTAATCATCATGAACCAAACTATAGTCAAAGTAGTAAAGTGTAAACAGACATATCATCAAGGTTTTAGATTCAAAATATGGTGGTCTCTTCCTGCTCCTTTTCGGTATAAGAGTCAGTTTCTTTTGCATGCTAGTTTTGCAATTTTTACGGAGTCTTTGGTTTGGTAGAAACAATAGGAATTGTAGGGGAATGAGAATTCAAGAGGAGGTCGTTTGGTCTTTCACTAGATTCCATGTCTCCCTTTGAGTTTTGTTGCATAAGGATTTTTACAATTATCCTCTAGTCTTATTTTACTATATTAGCTTCCAGTTATAGGTTGGCTCCTTTTCGTGGGCCCTCTTTCTCTCTCTTCTTTTGAAAAAGGTAAAAAAGTTCTTTAAGGATCCTGTGGATGCTAAGTGTTTTATGAGATCTCCAAGGATTCGTCCCTATGCTAGTCTAAGACTCCACTTAGTTCAATGGATTTATCTTTAGAGTGGATTTGGCCATGCTTATCATTTTTAACCATGACTTCCTGCTTCCTCCCTACAATGTTTTATTCAGTGTTTTATTGTACAAACAGTGTTAAAATCTCAGTAAAACGATAAAGGAAAAGGTGAAGTAGTAGAGAGATCAACTTGACATTCACTGGCTGGGATTTATAGATACACAGTAAAACTGGATTTCCCAAGATTTTGCATAAATGATCCCAACATTTTAAAATGGGAAACCCTGATGAGAACCATCATTAAATTTTATGTTAATGTACATGATAGTCTCTAGACATTCTGAAAATCAAAAGATAAATGGCGTAACTATTACATACAAATTCTGTATGACATAATTAGTATCGAATTATATGGTATGGTGTCTAAAGCTTCGTATATGCAAAATGACTTCAGGTCCTTGCAGCTAATATCCTTGCCTTGGCATGGAATGTCATCCTCTCCTTTAAAGCTCACAAAGAGATCATTACCCGATAGGTAAAAATCTTCACTTGTTATGGGATTGGATCTATGATTTTGTATTACACTCAACAAACATTTTGGTCAATCTTGAATTAATAATTGATCATTTCTTGCAGATTATGTTATCAGAGGTAGTTCAAATAACAATTTTGATGAAATATTAGTTCTTAGTCTCAGCCTCTAAAAATATTATTTAGTTTTGGAACAAAAATGTGACACAGGCGTGCGAGATCTAGATCGAATGTCAATTATTTTGTTTGGTGCCTTGTCTTGAAGTGCTACATAAAAACAAGGGTAAAATGGAACATTAAAGATACCGATTTATCTTCTTTGTTCAAACTTCTCACTTGAAGCTTTTTCTCATTTACAAATATGGAGGAGTCATTGAGATGAAACTAAAGACGAAGATGTACAAGGATAAGGATATGGATTTTGCGTTTTCATTTCTAGTATTTTCTTTTGATTTAATACTTCACTTTTATGATTTTGTGAACTCTGTAGGAAATGGGAGCCTTTAATGTTAGTCCACTTTATCTCAACTCATTTTTCATTCTCTTTCAATATTG

Coding sequence (CDS)

ATGAGGTATGCAATTTTATTTGAATCCCCAATTTTTCTTTCAAAACCTACTTTTTCCAGAATCCCATTTGGTCCCTTCAATCATTTCTGTCAAAAAAGATGGAGAAAGCCAATAGTGAACGCTCAAACTCGGTTAGAAGACAGAACAAGGGACCTCAAGCTCGACAAACTCGCAACCCAGCTCAAAAAATTTAGGGTCATCCTCAAACTCTACGAGCTCATGAACAATCGGAAACGCGGCCCTTTCGTCTCCTTACAAATCATGTCTCGTTGGAGAAACATTGTTGGTGTCAGAATCGGAATTGGGGAGTTTCTTCATAAGTACCCCCATTTGTTCGACTTATTTCCTCATCCGGTAAGGAGGAATTTATGCTGTAGAATCACTGGAAAGATGACTGCCTTGATGAAACAAGAGGAGAATGTTATTAACGATATGGAAATCGAGACTGTACAGCGATTGAAGAAGTTGCTAATGATGTCTGTGAATGGGACTCTCCATGTTCATGCTTTGAGACTAATCAGCAGGGAATTGGGGTTGCCTGATGGGTTTAGAGAATCGATTCTTGAGAAGTATTCTGATGATTTTAGATTGGTTGATTTGGAGATTGTTGAATTGGTTGAGAAACATAAGAATGGAGCTATTGCTGAGGTTGAAAAATGGAGGGAGAGAGAGTTTAGAGAGAAATGGCTGAGCGAATTCGATGTCAAATATGCATTTCCTATCAATTTCCCAACTGGGTTTATAATAGAAGGTGGTTTTAGAGAGAAACTGAGGAATTGGCAGAGGCTTCCATATACACAGCCATATGAGAAGAGACAAGGCTTTGGTCATCGTTCTTCTGGGGGGGTTCAGCGCCATGAGAAGCGAGCTGTGGCTGTACTTCATGAGCTTTTGAGCTTGACTGTGGAAAAGCTGGTTGACGTGGAGCGACTTGTCCATTTTAGGCGTGATTTCGCCATTGAAGTCAATATCCGCGAGCTTCTACTGAAGCACCCAGGAATATTCTACATATCAACCAAGGGGACCACCCAAATTGTTTTCCTTAGAGAGGCTTATGCTAAAGGGTGCTTGGTAGAGCCTAATCCAATATACATTGTTAGAAGGAAGATGCAGGACCTTGTTTTGTTGGGTCGCCGACACACGAAGCAGTTGGAATCATCCATGGAAATCAAGGAGAATGACAATGCAACCGAAAATGGAGACTGGCTATCTAAAAGTGAAGGAAGTTGGGTCTTGCCAATACTACAGGGCTTCGATTGA

Protein sequence

MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD

Homology

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BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.1e-64
Identity = 143/359 (39.83%), Postives = 208/359 (57.94%), Query Frame = 0


Query: 36  KPIVNAQT--RLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFV--SLQIMSRW 95
           KP   + T  + +DR RD   D      KK R ++K + L+ ++         L  ++R 
Sbjct: 32  KPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARR 91

Query: 96  RNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 155
             +   +   G FL K+PH+F+++ HPV+R L CR+T K    ++ E   + D   + V 
Sbjct: 92  LGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVT 151

Query: 156 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE-----IVELV 215
           RL+KL+MMS  G + +  +R+   E GLP+ F  S++ K+   FRL+D E      +E+V
Sbjct: 152 RLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIV 211

Query: 216 EKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYT 275
           EK  N +I  +E+ RE E+R K +   DV+++F +NFP GF I   FR  +  WQRLPY 
Sbjct: 212 EKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYW 271

Query: 276 QPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRE 335
            PYE   G+  RS     R EKR+VA +HELLSLTVEK + +ER+ HFR    +   ++E
Sbjct: 272 SPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKE 331

Query: 336 LLLKHPGIFYISTKGT---TQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 383
            LL+H GIFYIST+G       VFLRE Y +G LVEPN +Y+ RR++ +LVL+  R  K
Sbjct: 332 FLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

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BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.3e-35
Identity = 121/386 (31.35%), Postives = 204/386 (52.85%), Query Frame = 0


Query: 35  RKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYE-LMNNRKRGPFVSLQIMSRWRN 94
           R+  V AQ  ++ R +++  D +  + KK +++LKL   L++N  R   +SL+ + R+R 
Sbjct: 51  RRLAVVAQAAVK-RRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDR--VMSLRDLGRFRR 110

Query: 95  IVGV--RIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQ 154
            +G+  +  +   L ++P +F++    V  +L  R+T     L   E ++ N+ E   V 
Sbjct: 111 DLGLTRKRRLIALLKRFPGVFEVVEEGV-YSLRFRLTPAAERLYLDELHLKNESEGLAVT 170

Query: 155 RLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLEI---VELVEK 214
           +L+KLLMMS +  + +  +  +  +LGLP  FR++I  +Y   FR+V ++    +EL   
Sbjct: 171 KLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVVQMDRGPGLELTHW 230

Query: 215 HKNGAIAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQRL 274
               A++  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ +
Sbjct: 231 DPELAVSAAEV-AEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEM 290

Query: 275 PYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVN 334
           PY  PY     F H  SG  ++ EK A  V+HE+LSLT+EK   V+ L HFR +F    +
Sbjct: 291 PYISPY---SDFSHLRSGSAEK-EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQS 350

Query: 335 IRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTKQ 394
           +R +L++HP +FY+S KG    VFLREAY    LVE + + +++ KM+ LV + R   + 
Sbjct: 351 LRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRG 410

Query: 395 LESSMEIKENDNATENGDWLSKSEGS 410
           + ++ E  E D    NG     SEGS
Sbjct: 411 VPATSE--EADRT--NGAAQMLSEGS 423

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-34
Identity = 117/386 (30.31%), Postives = 198/386 (51.30%), Query Frame = 0


Query: 33  RWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWR 92
           R R   V AQ  ++ R ++   D +  + KK +++LKL  ++   +    +SL+ + R+R
Sbjct: 43  RPRPAAVVAQAAVK-RRKEAPFDTVIQRDKKLKLVLKLRNIL-VAQPDRVMSLRELGRFR 102

Query: 93  NIVGV--RIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETV 152
             +G+  +  +   L ++P +FD+    V  +L  R+T     L   E  + N+ E   V
Sbjct: 103 RDLGLTRKRRLIALLRRFPGVFDVVEEGV-YSLRFRLTPAAERLYLDELRLRNESEGLAV 162

Query: 153 QRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE---IVELVE 212
            +L+KLLMMS    + +  +  +  +LGLP  FR+++  +Y   FR+V ++    +EL  
Sbjct: 163 AKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVVRMDRGPALELTH 222

Query: 213 KHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINF-----PTGFIIEGGFREKLRNWQR 272
                A++  E   E E R +   E ++    P+ F     P G  +  G   ++  ++ 
Sbjct: 223 WDPELAVSAAE-LAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKE 282

Query: 273 LPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEV 332
           +PY  PY     F H  SG  ++ EK A  V+HE+LSLTVEK   V+ L HFR +F    
Sbjct: 283 MPYISPY---ADFSHLRSGSDEK-EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQ 342

Query: 333 NIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGRRHTK 392
           ++R ++++HP +FY+S KG    VFLREAY    LVE N + +++ KM+ LV + R   +
Sbjct: 343 SLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRR 402

Query: 393 QLESSMEIKENDNAT-ENGDWLSKSE 408
               + E  E  N + ++ D +S  E
Sbjct: 403 AAVGTGEEAEGMNGSLQSRDQVSDEE 420

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.5e-34
Identity = 102/340 (30.00%), Postives = 178/340 (52.35%), Query Frame = 0


Query: 48  RTRDLKLDKLATQLKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGV--RIGIGEFL 107
           R ++L  D +  + KK +++L + +++ ++     +SL+ + ++R  +G+  R      L
Sbjct: 78  RRKELTFDSVVQRDKKLKLVLNIRKILVSQP-DRMMSLRGLGKYRRDLGLKKRRRFIALL 137

Query: 108 HKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTL 167
            KYP +F++       +L  ++T +   L   E  + N++E   V +L+KL+MMS++  +
Sbjct: 138 RKYPGVFEIVEEGA-YSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMSIDKRI 197

Query: 168 HVHALRLISRELGLPDGFRESILEKYSDDFRLVDL---EIVELVEKHKNGAIAEVE---- 227
            +  +  +  +LGLP  FR++I ++Y   FR+V       +EL       A++  E    
Sbjct: 198 LLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVSAAELSED 257

Query: 228 KWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHR 287
             R RE  E+ L          +  P G  +      K+  ++ + Y  PY   + F H 
Sbjct: 258 DNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPY---KDFSHL 317

Query: 288 SSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYIS 347
            SG +++ EK A  V+HELLSLT EK   V+ L HFR +F     +R +L++HP +FY+S
Sbjct: 318 RSGTLEK-EKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFYVS 377

Query: 348 TKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 379
            KG    VFLREAY    L++ +P+ +V+ KM+ LV + R
Sbjct: 378 LKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPR 411

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-22
Identity = 89/310 (28.71%), Postives = 143/310 (46.13%), Query Frame = 0


Query: 83  VSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQEENVI 142
           + +  +S+      V   I  FL K+P +F+ F  P       R+T + T L +QE  V 
Sbjct: 67  IPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEATELDRQERVVY 126

Query: 143 NDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLVDLE- 202
                +   RLKKL++MS +  L +  ++ +   LGLPD + +         FR VD+E 
Sbjct: 127 QTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMED 186

Query: 203 -IVELVEKHKNG--AIAEVEKWREREFR-EKWLSEFDVKYAFPINFPTGFIIEGGFREKL 262
            +  L   +  G   ++ ++K   ++ R E  L E +    FP+    G  +     + L
Sbjct: 187 GVKGLAVDYNGGDKVLSVLQKNAMKKRRGEVSLEEIE----FPLFPSKGCRLRVKIEDWL 246

Query: 263 RNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRD 322
             +Q+LPY  PY+        S       EKR V  LHELL L VE   + ++L+  ++ 
Sbjct: 247 MEFQKLPYVSPYDDYSCLDPSSDIA----EKRVVGFLHELLCLFVEHSAERKKLLCLKKH 306

Query: 323 FAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKM------Q 382
           F +   + +   +HP IFY+S K  T    LRE Y     VE +P+  VR+K        
Sbjct: 307 FGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNS 366

[Close]

BLAST of Cucsat.G13197.T8 vs. NCBI nr
Match: XP_004136766.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KGN59407.1 hypothetical protein Csa_001413 [Cucumis sativus])

HSP 1 Score: 850 bits (2197), Expect = 1.93e-311
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of Cucsat.G13197.T8 vs. NCBI nr
Match: XP_008443210.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443212.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443213.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 821 bits (2120), Expect = 1.06e-299
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of Cucsat.G13197.T8 vs. NCBI nr
Match: KAA0053914.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 790 bits (2041), Expect = 1.76e-287
Identity = 385/401 (96.01%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRK 78
           SRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQL+KFRVILKL+ELM NRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDF 318
           NWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDV+RLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           RHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of Cucsat.G13197.T8 vs. NCBI nr
Match: XP_038903898.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903900.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 780 bits (2014), Expect = 1.51e-283
Identity = 379/419 (90.45%), Postives = 400/419 (95.47%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I  ES + LSKP  SRIPFGPFNHFCQ+RWRKP+ NAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYKISLESALSLSKPKISRIPFGPFNHFCQRRWRKPVENAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
            +KFR+ILKL ELM +RKRGPFVSLQIMSRWRNIVG++IGIGEF+HKYPH+FD+FPHPVR
Sbjct: 61  FQKFRIILKLRELMIDRKRGPFVSLQIMSRWRNIVGLKIGIGEFVHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVIND+EIETVQRLKKLLMMSVNG LHVHALRLIS+ELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDLEIETVQRLKKLLMMSVNGALHVHALRLISKELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGF ESILEKYSDDFRLVDLEIVELVEKH+NGA+AEVE+WREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFGESILEKYSDDFRLVDLEIVELVEKHENGAVAEVEQWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGF IEGGFREKLRNWQRLPY +PYEKRQGFG RSSGG+QRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFRIEGGFREKLRNWQRLPYAKPYEKRQGFGFRSSGGMQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVD+ERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCL+EP
Sbjct: 301 TVEKLVDIERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLIEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKEND+A  NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDSAAYNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of Cucsat.G13197.T8 vs. NCBI nr
Match: XP_022937832.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_022937840.1 protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 738 bits (1905), Expect = 5.47e-267
Identity = 360/414 (86.96%), Postives = 386/414 (93.24%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDRTRDLKLDKLATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           GF I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ R EKRAVAVLHELLSLTVEKL
Sbjct: 243 GFKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGDWLSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL
Match: A0A0A0LFE1 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 SV=1)

HSP 1 Score: 850 bits (2197), Expect = 9.37e-312
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ
Sbjct: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR
Sbjct: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL
Match: A0A1S3B7J9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4 SV=1)

HSP 1 Score: 821 bits (2120), Expect = 5.12e-300
Identity = 400/419 (95.47%), Postives = 412/419 (98.33%), Query Frame = 0


Query: 1   MRYAILFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQ 60
           MRY I FESP FLSKPTFSRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQ
Sbjct: 1   MRYEIFFESPFFLSKPTFSRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQ 60

Query: 61  LKKFRVILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVR 120
           L+KFRVILKL+ELM NRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVR
Sbjct: 61  LQKFRVILKLHELMTNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVR 120

Query: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180
           RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP
Sbjct: 121 RNLCCRITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLP 180

Query: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFP 240
           DGFRESILEKYSDDFRLVDLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFP
Sbjct: 181 DGFRESILEKYSDDFRLVDLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFP 240

Query: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSL 300
           INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSL
Sbjct: 241 INFPTGFIIEGGFREKLRNWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSL 300

Query: 301 TVEKLVDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEP 360
           TVEKLVDV+RLVHFRRDFAIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEP
Sbjct: 301 TVEKLVDVDRLVHFRRDFAIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEP 360

Query: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 361 NPIYIVRRKMQDLVLLGRRHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 419

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL
Match: A0A5A7UFE6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006380 PE=4 SV=1)

HSP 1 Score: 790 bits (2041), Expect = 8.50e-288
Identity = 385/401 (96.01%), Postives = 397/401 (99.00%), Query Frame = 0


Query: 19  SRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFRVILKLYELMNNRK 78
           SRIPFGPFNHFCQKRWRKP+V+AQTRLE RTRDLKLDKLATQL+KFRVILKL+ELM NRK
Sbjct: 30  SRIPFGPFNHFCQKRWRKPVVSAQTRLEGRTRDLKLDKLATQLQKFRVILKLHELMTNRK 89

Query: 79  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCCRITGKMTALMKQE 138
           RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPH+FD+FPHPVRRNLCCRITGKMTALMKQE
Sbjct: 90  RGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHVFDVFPHPVRRNLCCRITGKMTALMKQE 149

Query: 139 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 198
           ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV
Sbjct: 150 ENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRESILEKYSDDFRLV 209

Query: 199 DLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 258
           DLEIVELVEKH++GA+AEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR
Sbjct: 210 DLEIVELVEKHEDGAVAEVEKWREREFREKWLSEFDVKYAFPINFPTGFIIEGGFREKLR 269

Query: 259 NWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVERLVHFRRDF 318
           NWQRLPYTQPYEKRQ FGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDV+RLVHFRRDF
Sbjct: 270 NWQRLPYTQPYEKRQRFGHRSSGGVQRHEKRAVAVLHELLSLTVEKLVDVDRLVHFRRDF 329

Query: 319 AIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 378
           AIEVNIRELLLKHPG+FYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR
Sbjct: 330 AIEVNIRELLLKHPGVFYISTKGTTQIVFLREAYAKGCLVEPNPIYIVRRKMQDLVLLGR 389

Query: 379 RHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           RHTKQLESSMEIKENDNA +NGDWLSKSEGSWVLPILQGFD
Sbjct: 390 RHTKQLESSMEIKENDNAADNGDWLSKSEGSWVLPILQGFD 430

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL
Match: A0A6J1FCB5 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444101 PE=4 SV=1)

HSP 1 Score: 738 bits (1905), Expect = 2.65e-267
Identity = 360/414 (86.96%), Postives = 386/414 (93.24%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDRTRDLKLDKLATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRTRDLKLDKLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMSVNGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSVNGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           GF I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ R EKRAVAVLHELLSLTVEKL
Sbjct: 243 GFKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRREKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGDWLSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHISAADNGDWLSKSEGSWVLPILQGFD 416

[Close]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL
Match: A0A6J1I6W3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470166 PE=4 SV=1)

HSP 1 Score: 729 bits (1881), Expect = 1.20e-263
Identity = 356/414 (85.99%), Postives = 383/414 (92.51%), Query Frame = 0


Query: 6   LFESPIFLSKPTFSRIPFGPFNHFCQKRWRKPIVNAQTRLEDRTRDLKLDKLATQLKKFR 65
           LFES   LS   FSR+ FGPFNHFCQ+RW KP V AQTRLEDR RDLKLD LATQ++K R
Sbjct: 3   LFESAFSLSTTDFSRLRFGPFNHFCQRRWGKPAVTAQTRLEDRIRDLKLDTLATQIRKLR 62

Query: 66  VILKLYELMNNRKRGPFVSLQIMSRWRNIVGVRIGIGEFLHKYPHLFDLFPHPVRRNLCC 125
           +I KL ELM +RKRGPFVSLQIMSRWRN VG+RIGIG+F+HKYPH+FD+FPHP+RRNLCC
Sbjct: 63  IIFKLRELMIDRKRGPFVSLQIMSRWRNFVGLRIGIGDFVHKYPHVFDVFPHPLRRNLCC 122

Query: 126 RITGKMTALMKQEENVINDMEIETVQRLKKLLMMSVNGTLHVHALRLISRELGLPDGFRE 185
           RITGKM ALMKQEENVIND EIETVQRLKKLLMMS NGTLH+HALRLIS+ELGLPDGFRE
Sbjct: 123 RITGKMAALMKQEENVINDSEIETVQRLKKLLMMSANGTLHIHALRLISKELGLPDGFRE 182

Query: 186 SILEKYSDDFRLVDLEIVELVEKHKNGAIAEVEKWREREFREKWLSEFDVKYAFPINFPT 245
           SIL KYSDDFRLVDLEIVELV+KH+N A+AEVE+WREREFREKWLSEFDVK+AFPINFPT
Sbjct: 183 SILVKYSDDFRLVDLEIVELVDKHENVAVAEVEQWREREFREKWLSEFDVKFAFPINFPT 242

Query: 246 GFIIEGGFREKLRNWQRLPYTQPYEKRQGFGHRSSGGVQRHEKRAVAVLHELLSLTVEKL 305
           G+ I+GGFREKLRNWQRLPY +PYEKRQGFG RS GG+ RHEKRAVAVLHELLSLTVEKL
Sbjct: 243 GYKIKGGFREKLRNWQRLPYAKPYEKRQGFGVRSCGGMHRHEKRAVAVLHELLSLTVEKL 302

Query: 306 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGTTQIVFLREAYAKGCLVEPNPIYI 365
           VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKG TQIVFLREAYAKGCLVEPNPIYI
Sbjct: 303 VDVERLVHFRRDFAIEVNIRELLLKHPGIFYISTKGNTQIVFLREAYAKGCLVEPNPIYI 362

Query: 366 VRRKMQDLVLLGRRHTKQLESSMEIKENDNATENGDWLSKSEGSWVLPILQGFD 419
           VRRKMQDL+LLGRRHTKQLESSMEIKE+ +A +NGD LSKSEGSWVLPILQGFD
Sbjct: 363 VRRKMQDLLLLGRRHTKQLESSMEIKEHVSAADNGDCLSKSEGSWVLPILQGFD 416

The following BLAST results are available for this feature:

BLAST of Cucsat.G13197.T8 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q689D6	3.1e-64	39.83	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
Q65XL5	2.3e-35	31.35	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	1.1e-34	30.31	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	7.5e-34	30.00	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9ZUZ6	1.7e-22	28.71	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of Cucsat.G13197.T8 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136766.1	1.93e-311	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >XP_011652162.1 protein RO...	[more]
XP_008443210.1	1.06e-299	95.47	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_008443211.1 PR...	[more]
KAA0053914.1	1.76e-287	96.01	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa] >TYK25491.1 prote...	[more]
XP_038903898.1	1.51e-283	90.45	protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038903899.1 protein ...	[more]
XP_022937832.1	5.47e-267	86.96	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucurbita moschata] >XP_02293784...	[more]

BLAST of Cucsat.G13197.T8 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFE1	9.37e-312	100.00	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816690 PE=4 S...	[more]
A0A1S3B7J9	5.12e-300	95.47	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103486860 PE=4...	[more]
A0A5A7UFE6	8.50e-288	96.01	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1FCB5	2.65e-267	86.96	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I6W3	1.20e-263	85.99	protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 50..378 e-value: 1.6E-107 score: 359.2
None	No IPR available	PANTHER	PTHR31476:SF12	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN	coord: 17..418
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 17..418

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13197	Cucsat.G13197	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13197.T8.E1	Cucsat.G13197.T8.E1	exon
Cucsat.G13197.T8.E2	Cucsat.G13197.T8.E2	exon
Cucsat.G13197.T8.E3	Cucsat.G13197.T8.E3	exon
Cucsat.G13197.T8.E4	Cucsat.G13197.T8.E4	exon
Cucsat.G13197.T8.E5	Cucsat.G13197.T8.E5	exon
Cucsat.G13197.T8.E6	Cucsat.G13197.T8.E6	exon
Cucsat.G13197.T8.E7	Cucsat.G13197.T8.E7	exon
Cucsat.G13197.T8.E8	Cucsat.G13197.T8.E8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13197.T8.C1	Cucsat.G13197.T8.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13197.T8	Cucsat.G13197.T8-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016787	hydrolase activity