Cucsat.G12653.T7 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12653.T7
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationctg1838: 1839889 .. 1842285 (-)
RNA-Seq ExpressionCucsat.G12653.T7
SyntenyCucsat.G12653.T7
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGGATCTGTTCTATAGGTTGTACATCTGTGTCCTTGAGTTCTAAGGAGACAAGAACCAAAGTCTGGTGGATGAATTGCTGCCCTGTGGCTAGAGCGTGATTAACGGTTCGACAGATCTCGGTCTGGCGGCTGTGGAGGATCGTTCTTGGCAGGCTTCCAACCTGCTGGGATGGCCACAAGGCGGTCTGACAGACTTCACACTTCTTTTTTGCTCCTCGAGATGGGAAAGACTTGGATATATTTGGTTTCTAAGAAAATTTGAGGTTAATTCTTAAAGATGTTTTCTCTGCATTTTTTGTGTTCCTTTGAATGGGGTTTGAATTTCTGCTGCTACGGCATGTTGTTGGTGTGAAGAGATGTGGCATAGGAGATTTTACTTAGATGGATGGTTATTTGGTTTTTGCTCCTAAAGTGTTTGATGAAACGTCTCCAAAACAAATTCTGAGTTGCTTTTGTTCTTCTAGTAATAGATCAAAATAGTAGGAACCATTCACATCCAACAACGTTACAACAGCCATATCCATATCTGTGTATGAATTCCCTGCAACTCCATCTTTTTTCTCACTCCCTCAATTCCTGCAAATCCATATCTCACCTCAAGCAAATCCATGGCGTCGCCATTAAAACACCCTCTCTCTCTCTCCCCAATCTCATTCCCAAGCTCATCTTTCTCTCCTCCTCCTCCTCCTCCTCCTCCCCTGACCTTTTCTACATTCGCTCCATCCTTCTTACTCACTCCCATGATGCTCAATTCTGTCTCAGTCTCTGCAACGCTATCATCCGCAGCATTTCTCGCAACTCCATCAATCTCTCGCCCATGGAGTTCTTGAACGAAATGCTTGTCGTCGGCCTCGAACCAGATGGATTCACAATACCTCTTGTTCTCAAGGCATTGGCTCTGATTCAAGGGATTAGAGAAGGCCAACAGATTCACGCTCGTTCAATCAAGACTGGAATGGTGGGGTTCAATGTTTATGTGAGTAATACACTGATGAGACTTTATTCCGTCTGTGGCTCTATCCACGATGTCCAGAAGGTGTTCGACGAATGTCCTCACCGCGACTTGGTGTCTTGGACTACACTCATTCAAGCGTTTACGAAGGCCGGGCTATACAGCAGAGCAGTAGAAGCTTTTATGGAAATGTGTGATTTGAGGCTAAGAGCTGATGGGCGGACTCTCGTGGTTGTCCTCTCTGCTTGCTCCAACTTGGGAGACCTGAATTTGGGTCAAAAGGTACATTCCTATATCCGCCATTACATTGACATGAAAGCAGATGTATTTGTTGGTAATGCTCTGTTAGATATGTACCTGAAATGTGATGATTTGAACTCTGCTTACAAAGTGTTCGACGAAATGCCTGTGAAAAACGTTGTTACATGGAATGCTATGATTTCGGGATTGGCTTACCAAGGTCGGTACAGGGAAGCTCTAGATACGTTCCGTATGATGCAAGACAAAGGGGTCAAGCCAGATGAAGTGACCTTAGTGGGGGTTTTGAATTCTTGTGCAAACCTTGGAGTCCTTGAAATAGGTAAGTGGGTTCATGCATACATGCGTAGAAATCATATTTTAGCCGATAAATTTGTTGGGAATGCGCTTCTTGATATGTATGCAAAATGTGGAAGTATAGATGAAGCTTTTAGGGTGTTCGAGAGCATGAAAAGAAGGGATGTTTATTCATACACTGCCATGATATTTGGTTTAGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCGAGATGTTTCGAGTTGGTATCGAGCCAAACGAAGTAACATTTTTAGGTCTTCTTATGGCTTGTAGCCATGGCGGATTGGTTGCTGAAGGGAAGAAGTACTTTTTTCAGATGTCAGATAAATATAAGCTTAGACCTCAAGCAGAACATTACGGTTGCATGATTGACCTTCTTGGTCGTGCAGGGTTAGTGAAGGAAGCAGAAGAGATTATTCACAAAATGGAAATCAGGCCCGATGTCTTCGCTTGTGGAGCGTTATTAGGGGCATGCAGGATTCATGGAAATGTCGATATTGGTGAAAGTGTGATGCAAAAGTTGACGGAGTTAGATCCGGATGAAGAAGGTACGTACATTCTTATGACGAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATTGAAAATAAGAAAGACAATGAAAAATAAGAAGATGAGAAAGACCCCTGGATGTAGTTTGATTGAAGTTGATGGTGTCGTTCATGAATTTCGAAAAGGAGACAAATCACATCCAAGGAGCAAAGTTATATACTTAGTATTGGAAGGAATTGCTACTCATTTAAAGAGCTATGGGATAGAGGAACATAGTACATTTTGTATATAAGTTTTCCTTTCCCTACCAACTAAAATAAAAAAGCTTACAACTTAAAC

Coding sequence (CDS)

ATGCCTGTGAAAAACGTTGTTACATGGAATGCTATGATTTCGGGATTGGCTTACCAAGGTCGGTACAGGGAAGCTCTAGATACGTTCCGTATGATGCAAGACAAAGGGGTCAAGCCAGATGAAGTGACCTTAGTGGGGGTTTTGAATTCTTGTGCAAACCTTGGAGTCCTTGAAATAGATGAAGCTTTTAGGGTGTTCGAGAGCATGAAAAGAAGGGATGTTTATTCATACACTGCCATGATATTTGGTTTAGCCTTGCATGGTGAAGCAAACTGGGCATTCCAGGTCTTCTCCGAGATGTTTCGAGTTGGTATCGAGCCAAACGAAGTAACATTTTTAGGTCTTCTTATGGCTTGTAGCCATGGCGGATTGGTTGCTGAAGGGAAGAAGTACTTTTTTCAGATGTCAGATAAATATAAGCTTAGACCTCAAGCAGAACATTACGGTTGCATGATTGACCTTCTTGGTCGTGCAGGGTTAGTGAAGGAAGCAGAAGAGATTATTCACAAAATGGAAATCAGGCCCGATGTCTTCGCTTGTGGAGCGTTATTAGGGGCATGCAGGATTCATGGAAATGTCGATATTGGTGAAAGTGTGATGCAAAAGTTGACGGAGTTAGATCCGGATGAAGAAGGTACGTACATTCTTATGACGAATTTATATTCTTCTGTTCATAGATGGAAAGATGCATTGAAAATAAGAAAGACAATGAAAAATAAGAAGATGAGAAAGACCCCTGGATGTAGTTTGATTGAAGTTGATGGTGTCGTTCATGAATTTCGAAAAGGAGACAAATCACATCCAAGGAGCAAAGTTATATACTTAGTATTGGAAGGAATTGCTACTCATTTAAAGAGCTATGGGATAGAGGAACATAGTACATTTTGTATATAA

Protein sequence

MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI
Homology
BLAST of Cucsat.G12653.T7 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.6e-75
Identity = 133/323 (41.18%), Postives = 203/323 (62.85%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVL--- 60
           +P K+V++WN +I G  +   Y+EAL  F+ M   G  P++VT++ +L +CA+LG +   
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386

Query: 61  --------------------------------EIDEAFRVFESMKRRDVYSYTAMIFGLA 120
                                           +I+ A +VF S+  + + S+ AMIFG A
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446

Query: 121 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQA 180
           +HG A+ +F +FS M ++GI+P+++TF+GLL ACSH G++  G+  F  M+  YK+ P+ 
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506

Query: 181 EHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE 240
           EHYGCMIDLLG +GL KEAEE+I+ ME+ PD     +LL AC++HGNV++GES  + L +
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566

Query: 241 LDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDK 289
           ++P+  G+Y+L++N+Y+S  RW +  K R  + +K M+K PGCS IE+D VVHEF  GDK
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626

BLAST of Cucsat.G12653.T7 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 6.4e-72
Identity = 133/319 (41.69%), Postives = 188/319 (58.93%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE-- 60
           M  K+VV WNAMI G     R ++AL  F+ MQ    KPDE+T++  L++C+ LG L+  
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG 408

Query: 61  -------------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                          I EA  VF  ++ R+  +YTA+I GLALH
Sbjct: 409 IWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALH 468

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           G+A+ A   F+EM   GI P+E+TF+GLL AC HGG++  G+ YF QM  ++ L PQ +H
Sbjct: 469 GDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKH 528

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           Y  M+DLLGRAGL++EA+ ++  M +  D    GALL  CR+HGNV++GE   +KL ELD
Sbjct: 529 YSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELD 588

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 287
           P + G Y+L+  +Y   + W+DA + R+ M  + + K PGCS IEV+G+V EF   DKS 
Sbjct: 589 PSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSR 648

BLAST of Cucsat.G12653.T7 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.6e-70
Identity = 135/327 (41.28%), Postives = 198/327 (60.55%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE-- 60
           M  ++VV+WN MISG +  G +++A++ FR M+   ++P+ VTLV VL + + LG LE  
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELG 293

Query: 61  -------------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                          I++A  VFE + R +V +++AMI G A+H
Sbjct: 294 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIH 353

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           G+A  A   F +M + G+ P++V ++ LL ACSHGGLV EG++YF QM     L P+ EH
Sbjct: 354 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEH 413

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCM+DLLGR+GL+ EAEE I  M I+PD     ALLGACR+ GNV++G+ V   L ++ 
Sbjct: 414 YGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMV 473

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 295
           P + G Y+ ++N+Y+S   W +  ++R  MK K +RK PGCSLI++DGV+HEF   D SH
Sbjct: 474 PHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSH 533

BLAST of Cucsat.G12653.T7 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 3.5e-70
Identity = 130/314 (41.40%), Postives = 193/314 (61.46%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 60
           MPV++ ++W  MI G    G + E+L+ FR MQ  G+ PDE T+V VL +CA+LG LEI 
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG 387

Query: 61  E---------------------------------AFRVFESMKRRDVYSYTAMIFGLALH 120
           E                                 A +VF  M +RD +++TAM+ GLA +
Sbjct: 388 EWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANN 447

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           G+   A +VF +M  + I+P+++T+LG+L AC+H G+V + +K+F +M   +++ P   H
Sbjct: 448 GQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVH 507

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCM+D+LGRAGLVKEA EI+ KM + P+    GALLGA R+H +  + E   +K+ EL+
Sbjct: 508 YGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELE 567

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 282
           PD    Y L+ N+Y+   RWKD  ++R+ + +  ++KTPG SLIEV+G  HEF  GDKSH
Sbjct: 568 PDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSH 627

BLAST of Cucsat.G12653.T7 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 5.1e-69
Identity = 131/313 (41.85%), Postives = 188/313 (60.06%), Query Frame = 0

Query: 4   KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE----- 63
           K +V+W AMISG    G Y EA+D FR MQ  G++PDE++L+ VL SCA LG LE     
Sbjct: 204 KTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWI 263

Query: 64  ----------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALHGEA 123
                                       I +A ++F  M+ +DV S++ MI G A HG A
Sbjct: 264 HLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNA 323

Query: 124 NWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGC 183
           + A + F+EM R  ++PN +TFLGLL ACSH G+  EG +YF  M   Y++ P+ EHYGC
Sbjct: 324 HGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGC 383

Query: 184 MIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDPDE 243
           +ID+L RAG ++ A EI   M ++PD    G+LL +CR  GN+D+    M  L EL+P++
Sbjct: 384 LIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPED 443

Query: 244 EGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSHPRS 284
            G Y+L+ N+Y+ + +W+D  ++RK ++N+ M+KTPG SLIEV+ +V EF  GD S P  
Sbjct: 444 MGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFW 503

BLAST of Cucsat.G12653.T7 vs. NCBI nr
Match: XP_031737802.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 604 bits (1558), Expect = 7.30e-214
Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 60
           MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID
Sbjct: 275 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 334

Query: 61  EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 120
           EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS
Sbjct: 335 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 394

Query: 121 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 180
           HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC
Sbjct: 395 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 454

Query: 181 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 240
           GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK
Sbjct: 455 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 514

Query: 241 KMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI 297
           KMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI
Sbjct: 515 KMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI 571

BLAST of Cucsat.G12653.T7 vs. NCBI nr
Match: XP_031737800.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 [Cucumis sativus] >KGN59527.2 hypothetical protein Csa_002607 [Cucumis sativus])

HSP 1 Score: 587 bits (1514), Expect = 1.10e-206
Identity = 297/330 (90.00%), Postives = 297/330 (90.00%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI- 60
           MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 275 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 334

Query: 61  --------------------------------DEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                           DEAFRVFESMKRRDVYSYTAMIFGLALH
Sbjct: 335 KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALH 394

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH
Sbjct: 395 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 454

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD
Sbjct: 455 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 514

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 297
           PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH
Sbjct: 515 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 574

BLAST of Cucsat.G12653.T7 vs. NCBI nr
Match: KAA0053939.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25465.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 560 bits (1442), Expect = 9.12e-196
Identity = 280/330 (84.85%), Postives = 290/330 (87.88%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI- 60
           MPV+NVVTWNAMISGLAYQGRYREALDTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG 333

Query: 61  --------------------------------DEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                           DEAFRVFESMK+RDVYSYTAMI GLALH
Sbjct: 334 KWVHAYMRRNHILADEFVGNALLDMYAKCGSIDEAFRVFESMKKRDVYSYTAMIVGLALH 393

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFF+MSDKYKLRPQ+EH
Sbjct: 394 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEH 453

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGR GLVKEAEEI+HKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE+D
Sbjct: 454 YGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEID 513

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 297
           PDE+GTYILMTNLYSSVHRWKDA K+RKTMK KKMRKTPGCS IEVDGVVHEFRKGDKSH
Sbjct: 514 PDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSH 573

BLAST of Cucsat.G12653.T7 vs. NCBI nr
Match: XP_038902993.1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 521 bits (1341), Expect = 1.80e-180
Identity = 263/328 (80.18%), Postives = 279/328 (85.06%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE-- 60
           MPV+NVVTWNAMISGLAYQGRYREALDTFRMMQ+KG KPDEVTLVGVLNSCANLGVLE  
Sbjct: 273 MPVRNVVTWNAMISGLAYQGRYREALDTFRMMQNKGPKPDEVTLVGVLNSCANLGVLELG 332

Query: 61  -------------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                          IDE+F VFESMKRRDVYSYTAMI GLALH
Sbjct: 333 KWVHAYIRRNHILADKFVGNALLDMYAKCGRIDESFSVFESMKRRDVYSYTAMIVGLALH 392

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFSEM  VGIEPNEVTFLGLLMACSHGGLVAEGKKYFF+MS+ YKLRPQ EH
Sbjct: 393 GEANWAFQVFSEMIGVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSNTYKLRPQTEH 452

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGRAGLVKEAEEI+HKMEIRPD  A GALLGAC+I+GNVDIGESVMQKLT+LD
Sbjct: 453 YGCMIDLLGRAGLVKEAEEIVHKMEIRPDAIAWGALLGACKIYGNVDIGESVMQKLTDLD 512

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 295
           P+E GTYILMTNLYSSV RW+DALK+RKTMK+KKMRK+PGCSLIEVDG VHEFRKGDKSH
Sbjct: 513 PNENGTYILMTNLYSSVQRWRDALKLRKTMKSKKMRKSPGCSLIEVDGGVHEFRKGDKSH 572

BLAST of Cucsat.G12653.T7 vs. NCBI nr
Match: XP_016899770.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 518 bits (1335), Expect = 2.26e-180
Identity = 257/297 (86.53%), Postives = 266/297 (89.56%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 60
           MPV+NVVTWNAMISGLAYQGRYREALDTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI- 333

Query: 61  EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 120
                                   ALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS
Sbjct: 334 ------------------------ALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 393

Query: 121 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 180
           HGGLVAEGKKYFF+MSDKYKLRPQ+EHYGCMIDLLGR GLVKEAEEI+HKMEIRPDVFAC
Sbjct: 394 HGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFAC 453

Query: 181 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 240
           GALLGACRIHGNVDIGESVMQKLTE+DPDE+GTYILMTNLYSSVHRWKDA K+RKTMK K
Sbjct: 454 GALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIK 513

Query: 241 KMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI 297
           KMRKTPGCS IEVDGVVHEFRKGDKSHPRSKVIY VLEGIATHLKSYGI EHSTFCI
Sbjct: 514 KMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 545

BLAST of Cucsat.G12653.T7 vs. ExPASy TrEMBL
Match: A0A0A0LFA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1)

HSP 1 Score: 587 bits (1514), Expect = 9.55e-206
Identity = 297/330 (90.00%), Postives = 297/330 (90.00%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI- 60
           MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 361 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG 420

Query: 61  --------------------------------DEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                           DEAFRVFESMKRRDVYSYTAMIFGLALH
Sbjct: 421 KWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALH 480

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH
Sbjct: 481 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 540

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD
Sbjct: 541 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 600

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 297
           PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH
Sbjct: 601 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 660

BLAST of Cucsat.G12653.T7 vs. ExPASy TrEMBL
Match: A0A5A7UKB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006110 PE=4 SV=1)

HSP 1 Score: 560 bits (1442), Expect = 4.41e-196
Identity = 280/330 (84.85%), Postives = 290/330 (87.88%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI- 60
           MPV+NVVTWNAMISGLAYQGRYREALDTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEIG 333

Query: 61  --------------------------------DEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                           DEAFRVFESMK+RDVYSYTAMI GLALH
Sbjct: 334 KWVHAYMRRNHILADEFVGNALLDMYAKCGSIDEAFRVFESMKKRDVYSYTAMIVGLALH 393

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFF+MSDKYKLRPQ+EH
Sbjct: 394 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFEMSDKYKLRPQSEH 453

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGR GLVKEAEEI+HKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE+D
Sbjct: 454 YGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTEID 513

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 297
           PDE+GTYILMTNLYSSVHRWKDA K+RKTMK KKMRKTPGCS IEVDGVVHEFRKGDKSH
Sbjct: 514 PDEDGTYILMTNLYSSVHRWKDASKLRKTMKIKKMRKTPGCSSIEVDGVVHEFRKGDKSH 573

BLAST of Cucsat.G12653.T7 vs. ExPASy TrEMBL
Match: A0A1S4DVM9 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486837 PE=4 SV=1)

HSP 1 Score: 518 bits (1335), Expect = 1.09e-180
Identity = 257/297 (86.53%), Postives = 266/297 (89.56%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEID 60
           MPV+NVVTWNAMISGLAYQGRYREALDTFR+MQ+KGVKPDEVTLVGVLNSCANLGVLEI 
Sbjct: 274 MPVRNVVTWNAMISGLAYQGRYREALDTFRIMQNKGVKPDEVTLVGVLNSCANLGVLEI- 333

Query: 61  EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 120
                                   ALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS
Sbjct: 334 ------------------------ALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 393

Query: 121 HGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFAC 180
           HGGLVAEGKKYFF+MSDKYKLRPQ+EHYGCMIDLLGR GLVKEAEEI+HKMEIRPDVFAC
Sbjct: 394 HGGLVAEGKKYFFEMSDKYKLRPQSEHYGCMIDLLGRVGLVKEAEEIVHKMEIRPDVFAC 453

Query: 181 GALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNK 240
           GALLGACRIHGNVDIGESVMQKLTE+DPDE+GTYILMTNLYSSVHRWKDA K+RKTMK K
Sbjct: 454 GALLGACRIHGNVDIGESVMQKLTEIDPDEDGTYILMTNLYSSVHRWKDASKLRKTMKIK 513

Query: 241 KMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIYLVLEGIATHLKSYGIEEHSTFCI 297
           KMRKTPGCS IEVDGVVHEFRKGDKSHPRSKVIY VLEGIATHLKSYGI EHSTFCI
Sbjct: 514 KMRKTPGCSSIEVDGVVHEFRKGDKSHPRSKVIYFVLEGIATHLKSYGIVEHSTFCI 545

BLAST of Cucsat.G12653.T7 vs. ExPASy TrEMBL
Match: A0A6J1G7N7 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451544 PE=4 SV=1)

HSP 1 Score: 500 bits (1288), Expect = 1.31e-172
Identity = 253/328 (77.13%), Postives = 267/328 (81.40%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE-- 60
           MPV+NVVTWNAMI GLAYQGRY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE  
Sbjct: 282 MPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELG 341

Query: 61  -------------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                          IDEAFRVFE MKRRDVYSYTAMI GLALH
Sbjct: 342 KWVHAYMRRNHILADKFVGNALLDMYAKCGRIDEAFRVFEGMKRRDVYSYTAMIVGLALH 401

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFS M R G+EPNEVTFLGLLMACSH GLV++GKK FF MS+ YKLRPQAEH
Sbjct: 402 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKCFFDMSNTYKLRPQAEH 461

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGRAGLVKEAEEIIH MEIRPD FA GALLGACRIHGNV++GESVMQKL  LD
Sbjct: 462 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 521

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 295
           P E+G YILMTNLYSS HRWKDALK+RK MK+KKMRKTPGCSLIEVDGVVHEFRKGDKSH
Sbjct: 522 PGEDGNYILMTNLYSSAHRWKDALKLRKKMKSKKMRKTPGCSLIEVDGVVHEFRKGDKSH 581

BLAST of Cucsat.G12653.T7 vs. ExPASy TrEMBL
Match: A0A6J1I3M1 (pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470240 PE=4 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 1.41e-171
Identity = 252/327 (77.06%), Postives = 266/327 (81.35%), Query Frame = 0

Query: 1   MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE-- 60
           MPV+NVVTWNAMI GLAYQGRY+EALD FR MQ  G KPDEVTLVGVLNSCANLGVLE  
Sbjct: 281 MPVRNVVTWNAMILGLAYQGRYKEALDMFRRMQRTGPKPDEVTLVGVLNSCANLGVLELG 340

Query: 61  -------------------------------IDEAFRVFESMKRRDVYSYTAMIFGLALH 120
                                          IDEAFRVFESMKRRDVYSYTAMI GLALH
Sbjct: 341 RWVHAYMRRNYILADKFVGNALLDMYAKCGGIDEAFRVFESMKRRDVYSYTAMIVGLALH 400

Query: 121 GEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEH 180
           GEANWAFQVFS M R G+EPNEVTFLGLLMACSH GLV++GKKYFF MS+ YKLRPQAEH
Sbjct: 401 GEANWAFQVFSRMLREGVEPNEVTFLGLLMACSHSGLVSDGKKYFFDMSNTYKLRPQAEH 460

Query: 181 YGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELD 240
           YGCMIDLLGRAGLVKEAEEIIH MEIRPD FA GALLGACRIHGNV++GESVMQKL  LD
Sbjct: 461 YGCMIDLLGRAGLVKEAEEIIHSMEIRPDAFAWGALLGACRIHGNVNLGESVMQKLMNLD 520

Query: 241 PDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRKGDKSH 294
           P E+G YILMTNLYSS HRWKD LK+RKTMK+KKMRKTPGCSLIEVDGVVHEFRKGD SH
Sbjct: 521 PVEDGNYILMTNLYSSAHRWKDTLKLRKTMKSKKMRKTPGCSLIEVDGVVHEFRKGDMSH 580

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LN013.6e-7541.18Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9SJZ36.4e-7241.69Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop... [more]
Q9FI801.6e-7041.28Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q9LSB83.5e-7041.40Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
Q9SIL55.1e-6941.85Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
XP_031737802.17.30e-214100.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X2 ... [more]
XP_031737800.11.10e-20690.00pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 ... [more]
KAA0053939.19.12e-19684.85pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK25465... [more]
XP_038902993.11.80e-18080.18pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Benin... [more]
XP_016899770.12.26e-18086.53PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic ... [more]
Match NameE-valueIdentityDescription
A0A0A0LFA59.55e-20690.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815410 PE=4 SV=1[more]
A0A5A7UKB64.41e-19684.85Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DVM91.09e-18086.53pentatricopeptide repeat-containing protein At1g08070, chloroplastic isoform X1 ... [more]
A0A6J1G7N71.31e-17277.13pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor... [more]
A0A6J1I3M11.41e-17177.06pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like isofor... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..57
e-value: 2.4E-14
score: 55.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 58..269
e-value: 6.7E-41
score: 142.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 73..119
e-value: 2.5E-9
score: 37.2
coord: 4..53
e-value: 1.4E-14
score: 54.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 148..172
e-value: 2.7E-4
score: 18.9
coord: 75..109
e-value: 5.2E-6
score: 24.3
coord: 7..41
e-value: 9.2E-11
score: 39.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 147..172
e-value: 1.2E-4
score: 22.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 10.851745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 13.613992
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..59
NoneNo IPR availablePANTHERPTHR47928:SF107REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 59..296
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 59..296
NoneNo IPR availablePANTHERPTHR47928:SF107REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..59

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12653Cucsat.G12653gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12653.T7.E1Cucsat.G12653.T7.E1exon
Cucsat.G12653.T7.E2Cucsat.G12653.T7.E2exon
Cucsat.G12653.T7.E3Cucsat.G12653.T7.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12653.T7.C2Cucsat.G12653.T7.C2CDS
Cucsat.G12653.T7.C1Cucsat.G12653.T7.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12653.T7Cucsat.G12653.T7-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding