Cucsat.G12335.T7 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TATAAATGCAAAACTATGAGAGTTGTAGCACAAGTAAAGAGGACGGTAGCTAACTTACATCCAAATAAAGATATGTTTCCGAAGAGAAATTGGGGCCTCACATTTTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCGTCTCTCACAAAGAGTGAAGAGACAAAGAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCTAAACCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGGTAAAACACAATCTCCTACTTGTCATCTTTCAGATTTCTGCAGACATTCCCTCTTCCATTCATACATTTCTCTTCCATCTAATGATTTTCTCTTTTTCTTCTTTAAATGAAGAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAAAAATGCACATGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAACTCTATTTTATGTATAACATTAATGAACGCACCTTGAATCTAACTCCAACAACATCTAACGATGGATTTAGAATCGAAAGAATGAAACTTGTTTCTTTTTCTTTTTCATTATTTTTTGTGGAGGAGCCTGCTGAAGAATCCGTTTCTCAGCTCCAAGAGAATAGACATCGAACAATCACTTTTTAAGCAATTTAAAGAATTCAAACAGCACAAAATGAGAGCAATTCTACACAAAATGCTCTATTCGGTAACTATATCACTAACAGTTTCCCTTTGTTTTTACCAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGGTCACTGTTTAAATAATAAAAAAACGATAGAATCACGTATGGCTGATTCTTAGTCATCCGTATCATATCTATCCATGAAGTTTCAATTTATAACACTCCAACCAATGTTCTAACACAATTATCTTAATCAAACAGATCAATGCAAATTTTAATGTACTGGTTCTGTCATCAAACAGAGCCAATAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACTACTTAGAAGTATGACAACCATCTTCAATTAAACAGGTAATCTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTGAATGCAAACATAATTAGCCTACTTATCAATAACTATTAATCTAAAAATACTGCCAAGATTCAATTGGAAGAAGTTAACAAAATAGCCTACCTCTTCCAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGATTCCACTTGCAATTAACATTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAAC ATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTTCATTCAACAAAGCTGCACCTAAACCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCCCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAAAAATGCACATGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGGTCACTGTTTAA MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLRSNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREVTV Homology
BLAST of Cucsat.G12335.T7 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 3.7e-19 Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus]) HSP 1 Score: 268 bits (684), Expect = 7.09e-89 Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus]) HSP 1 Score: 251 bits (640), Expect = 3.64e-82 Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 244 bits (623), Expect = 1.40e-79 Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 229 bits (583), Expect = 1.70e-73 Identity = 121/136 (88.97%), Postives = 127/136 (93.38%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima]) HSP 1 Score: 223 bits (569), Expect = 2.28e-71 Identity = 117/136 (86.03%), Postives = 125/136 (91.91%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. ExPASy TrEMBL
Match: A0A0A0L9K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G703170 PE=4 SV=1) HSP 1 Score: 255 bits (651), Expect = 7.48e-85 Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1) HSP 1 Score: 244 bits (623), Expect = 6.80e-80 Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1) HSP 1 Score: 244 bits (623), Expect = 6.80e-80 Identity = 124/135 (91.85%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1) HSP 1 Score: 242 bits (617), Expect = 1.90e-78 Identity = 130/173 (75.14%), Postives = 131/173 (75.72%), Query Frame = 0
BLAST of Cucsat.G12335.T7 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1) HSP 1 Score: 223 bits (569), Expect = 1.10e-71 Identity = 117/136 (86.03%), Postives = 125/136 (91.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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