Cucsat.G12123.T4 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12123.T4
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein RETICULATA-RELATED 4, chloroplastic-like
Locationctg1837: 708284 .. 710914 (-)
RNA-Seq ExpressionCucsat.G12123.T4
SyntenyCucsat.G12123.T4
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTGAGATGAACACCAGGTGTTCCATAACATTCCCAAGTCAAATTCTCCTTCTTCAGGTGGCGTTGGCGGGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGGTATGTGGTGTGTTTTTGGAGCTGAATTTCTTCAGTAATTTTAATATTTTCTTTAATTTAAACGTGATTTCTTTTATTAATTTGTAGCGTAATGGGGCCAAGCTATTTGCTGTAGGGAGTGGTGCATCTGTGGTAAGCCAGTTGTTTTCCCCCTTGGTTCTTCCTTTGGCTTGATTTAAGCAATTACGTTGCCTCTTAACTATTACTCGGTGTTCTCACTGCATTATGGTCTGTTACATAAATATTATATTAAACTTAACATGCTATATGGTTAGAAGGATTTTTTTTATTTTTTTTGTTAAAACCTCTTCCATGTTATTTCACCCCAAGTTAATATTAGCTTAAGCTTTTCGATCAATGGTGATTTAGGATGGACTGGGAACATTTGAGATCATTTTTATTAAACTCCAGATGGTTTAATTGAATTTGGTATGGGAACATTTTTTGTATAGAGGTCAATATACACCAATACTGTTAAAATGAAACAGTAATGAAGTCATTTGTAAGTGCACCTCTTGCAACTAGTTGTGCTTTTGGCTTGGTTTAAGCAATTTTCTTGCCTCTTAAACATACCAAAAAATTTTGGAATCTTGATGACAAAAACTTCGGATCATGTGAAATTTTGGGGTTTCCTACAGTATAGTAGGACTAGAAGTAGGAGATTTCGTTGTTTTTGCACTGCTTCTGAACTTTGTGTATCTATCTAAGAAATAGTTACGAAGTAATTTGAGTTCACAAGAAATCAAATGAAGTTACATGGTGTTTCTTTACTTTTGAAAACGTTGCTTGACTTGTTGATGTGTAGATGGAAACCTATGCCTTATGGACTCTGTATTTCAGGTGGGTACGGGTATAACGAATACCTTGATAAATATAAGGAAGTTCTTTGACAAATCATATGCCATGGAAGCAGAGGATGTGCCTGTACTAGCAACAAGTATTGGCTATGGAGTTTACATGTCGGTTTCTAGCAATCTAAGGTACTGCACTTCTTCACTTCCATGTGTGAGGTCTCGTTTGATAACAATTTGATTTTTTGTTTTTAAACATTTAGCTTATAAACACAAATTTCACCTATTTATTTTATTGTTTTATTGTTGCTTTTACAAGTGCTTTCTAAATTCAAGTTTTGTGTACATAATTTGAATAAGAATCCAAATGTTTATGTTAGAAAGATAAAAATCATGGCAAAACAATTGAGAGAAAACAAATACGATTTTCAAAAATCAAAAACAAAAAATGGCTAAATGGTTTACGGAATTCGACAATTTTCCAGTTGTTTGATATGTTTTTAATTCTTCATTTCATGGGTCAGCTCGAAAGTTAGGCTGCTAAAAGAGTTACAAGACACTCTTAAGAATATTGAGAGAAAATGTGAGAGGAAACAATGTAGTAGTAATTTGAACTTACAACCTTTACCATATCTCTGAACTTAAAAGCAAAAACTAATAGAACAACCTTAGTTCCCCTCTTAGGAGTGGCCATATTCGAAGATACCAAATGGCAAATTGGAATGTCATTGGGGTAGGAAGAAATATGACTAGGATAGTTAAGCATATTTACTTTTAGCCTAGGAATTAGTTATTAAATAGAGGGTGAAAGATGAGATGAAATTATGCAACAACTTAGCTTAAAAAAACTGTTGGATTGAAGAAACCCCAGTTGATCAGGGACAGCGGTCAAATCGAAAAAAATAGTCGGATTCCCATTTAGGACAAGGCGGGGCGTGGAAGGTACCCCATCCCCGATCCCAAATCTGCTTCATTTAGGTTTCTTATTTCAAGTCTCAAGGCTCTTTTTTCTTAGCACTTTGGGAGTGTTTAGGCCTGGAGTGGACTCAAATTATAATAGTTTGTGTTTCCAACTATTATAACTTACACTTAACCACAATACTACTCTTTTCAAATCCCTCTTTATTTTGTTCAGATACCAAATAATTGCGGGAGTAATAGAGCAAAGAATACTAGAGCCTTTGCTGCACAAACACAAATTGGCATTGAGTGCAATCTGCTTTGCGGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGAGAAATTCTTCATCAGCCTTAAACCCCTGAAAGCTTTGTTCTTTTCTTTTCAAATTCCTTGAAAAACTTTTGTAAACACGTATTTTGTTTTTGTTCCAGGTGGGTGGATTTTGCGAGATGGACAGGGATTCAAAGAACGAGAGAGTAAAGTGGGAAAGAAAAGTAGACTTTTGTTCGAGAAATTATTTGACGAGGTTAGTATAATGTAATGCGTCGAGGCTATTTTTCGAGTTTTATTATATAAATATTTAGGGATATGGTGGTAGATGAATGTTGGGGTGTTTCCATTGAAGCATATATAAGGGTGTATGATTGTTTATTTGAATACATTATTATTTTTTTGCAAGTGTCGGAATGAAGAAAAAATAATTTGTTCCATTTTGAGTATTACAATACATTGAAGTTTGGAACAATTTGTCCTAATTTAAGTTATAATGAGAAAGTAGGCGCCAGCCTTCAATA

Coding sequence (CDS)

GTTTTTGAGATGAACACCAGGTGTTCCATAACATTCCCAAGTCAAATTCTCCTTCTTCAGGTGGCGTTGGCGGGTACCTCCTTTTCGTTTCTTCAGAGAGTTGGTGCTGTGGTGCGTAATGGGGCCAAGCTATTTGCTGTAGGGAGTGGTGCATCTGTGGTGGGTACGGGTATAACGAATACCTTGATAAATATAAGGAAGTTCTTTGACAAATCATATGCCATGGAAGCAGAGGATGTGCCTGTACTAGCAACAAGTATTGGCTATGGAGTTTACATGTCGGTTTCTAGCAATCTAAGATACCAAATAATTGCGGGAGTAATAGAGCAAAGAATACTAGAGCCTTTGCTGCACAAACACAAATTGGCATTGAGTGCAATCTGCTTTGCGGTTCGAACTGGCAACACTTTCTTGGGATCATTGATGTGGGTGGATTTTGCGAGATGGACAGGGATTCAAAGAACGAGAGAGTAA

Protein sequence

VFEMNTRCSITFPSQILLLQVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAEDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWVDFARWTGIQRTRE
Homology
[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-49
Identity = 94/136 (69.12%), Postives = 118/136 (86.76%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVAL+GTS++ LQR+GA+ RNGAKLFAVG+ +S+VGT ITN  I  RK  D++   E E 
Sbjct: 250 QVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSEGEVET 309

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VP+++TS+ YGVYM+VSSNLRYQI+AGVIEQR+LEP+LH+HKLALSA+CFAVRTGNTFLG
Sbjct: 310 VPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQHKLALSALCFAVRTGNTFLG 369

Query: 140 SLMWVDFARWTGIQRT 156
           SL+WVD+AR  GIQ++
Sbjct: 370 SLLWVDYARLIGIQKS 385

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match: Q9SIY5 (Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER5 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 54/136 (39.71%), Postives = 79/136 (58.09%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAM--EA 79
           Q +L G  ++   R+ +V+  G KL  VG  +S    G +N L  IRKF      +  +A
Sbjct: 565 QKSLGGQEWTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQA 624

Query: 80  EDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTF 139
           +  P+L T++ YG Y+  SSN+RYQIIAG+IE RI +  L    L ++ I F VR  N++
Sbjct: 625 KRSPMLKTALVYGGYLGTSSNIRYQIIAGLIEHRISDE-LSSQPLLVNMISFVVRVANSY 684

Query: 140 LGSLMWVDFARWTGIQ 154
            G+  W+D AR TG+Q
Sbjct: 685 FGTQQWIDLARSTGLQ 699

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match: Q8RWG3 (Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER6 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-17
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFF--DKSYAMEA 79
           Q +LAG  ++   R+ +V+  G KL  VG  +S    G +N L   RK    +   A + 
Sbjct: 574 QKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPELVVAEKP 633

Query: 80  EDVPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTF 139
           +  P+L T++ YG ++  S+NLRYQIIAG+IE R+ +  L    L ++AI F VRT N++
Sbjct: 634 KRSPLLKTAMVYGGFLGTSANLRYQIIAGLIEHRLSDE-LSSQPLLVNAISFVVRTLNSY 693

Query: 140 LGSLMWVDFARWTGIQ 154
            G+  W+D AR TG+Q
Sbjct: 694 FGTQQWIDLARSTGLQ 708

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-13
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 0 

Query: 27  SFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAEDVPVLATS 86
           +F+ + R G +V  G     VG  A +VGT I+N LI +RK  D S+    +  P L  S
Sbjct: 197 NFTLMNRFGTLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPPTLLNS 256

Query: 87  IGYGVYMSVSSNLRYQIIAGV--IEQRILEPLLHKHKLALSAICFAVRTGNTFLGSLMWV 146
           + +  +M VS+N+RYQ + G   + ++ L PL+ K  +       A+R  N  LG + +V
Sbjct: 257 LTWATHMGVSANVRYQTLNGAEFLLEKSLPPLVFKTSV------IALRVVNNVLGGMSFV 316

Query: 147 DFARWTGIQRTRE 158
             AR TG Q   E
Sbjct: 317 TLARMTGSQSVEE 323

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 0 

Query: 25  GTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAEDVPV-- 84
           G  FS  QR+      G    AVG G  +VG GI N ++  ++  +KS     E++PV  
Sbjct: 305 GCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKS----EENIPVPP 364

Query: 85  -LATSIGYGVYMSVSSNLRYQIIAGVIEQRILE--PLLHKHKLALSAICFAVRTGNTFLG 144
            + ++  +GV++SVSSN RYQII G+  +R++E  P   K   A  A    VR  N   G
Sbjct: 365 LIKSAALWGVFLSVSSNTRYQIINGL--ERVVEASPFAKKFPPAAMAFTVGVRLANNIYG 424

Query: 145 SLMWVDFARWTGIQ 154
            + +VD+AR +G Q
Sbjct: 425 GMQFVDWARLSGCQ 432

[Close]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match: XP_004149738.1 (protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypothetical protein Csa_001009 [Cucumis sativus])

HSP 1 Score: 268 bits (685), Expect = 1.50e-86
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 245 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 304

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 305 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 364

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 365 SLMWVDFARWTGIQRTRE 382

[Close]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match: TYJ99870.1 (protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 2.13e-86
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 222 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 281

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 282 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 341

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 342 SLMWVDFARWTGIQRTRE 359

[Close]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match: XP_008461823.1 (PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo] >KAA0048393.1 protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 4.28e-86
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 245 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 304

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 305 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 364

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 365 SLMWVDFARWTGIQRTRE 382

[Close]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match: XP_022934115.1 (protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 258 bits (658), Expect = 1.52e-82
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVA AGTS+SFLQRVGAVVRNGAKLFAVGSGASVVGTGITN+LIN+RK FDKSYAMEAED
Sbjct: 239 QVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSYAMEAED 298

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYG YMSVSSNLRYQI+AGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 299 VPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 358

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 359 SLMWVDFARWTGIQRTRE 376

[Close]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match: XP_023526496.1 (protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258 bits (658), Expect = 1.57e-82
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVA AGTS+SFLQRVGAVVRNGAKLFAVGSGASVVGTGITN+LIN+RK FDKSYAMEAED
Sbjct: 240 QVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSYAMEAED 299

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYG YMSVSSNLRYQI+AGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 300 VPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 359

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 360 SLMWVDFARWTGIQRTRE 377

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match: A0A0A0LCC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1)

HSP 1 Score: 268 bits (685), Expect = 7.28e-87
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 245 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 304

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 305 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 364

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 365 SLMWVDFARWTGIQRTRE 382

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match: A0A5D3BJ78 (Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00120 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 1.03e-86
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 222 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 281

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 282 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 341

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 342 SLMWVDFARWTGIQRTRE 359

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match: A0A5A7TXM9 (Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001130 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 2.07e-86
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 245 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 304

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 305 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 364

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 365 SLMWVDFARWTGIQRTRE 382

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match: A0A1S3CG26 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500333 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 2.07e-86
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED
Sbjct: 245 QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 304

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 305 VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 364

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 365 SLMWVDFARWTGIQRTRE 382

[Close]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match: A0A6J1F6R6 (protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441387 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 7.38e-83
Identity = 130/138 (94.20%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 20  QVALAGTSFSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNTLINIRKFFDKSYAMEAED 79
           QVA AGTS+SFLQRVGAVVRNGAKLFAVGSGASVVGTGITN+LIN+RK FDKSYAMEAED
Sbjct: 239 QVAFAGTSYSFLQRVGAVVRNGAKLFAVGSGASVVGTGITNSLINVRKLFDKSYAMEAED 298

Query: 80  VPVLATSIGYGVYMSVSSNLRYQIIAGVIEQRILEPLLHKHKLALSAICFAVRTGNTFLG 139
           VPVLATSIGYG YMSVSSNLRYQI+AGVIEQR+LEPLLHKHKLALSAICFAVRTGNTFLG
Sbjct: 299 VPVLATSIGYGTYMSVSSNLRYQILAGVIEQRMLEPLLHKHKLALSAICFAVRTGNTFLG 358

Query: 140 SLMWVDFARWTGIQRTRE 157
           SLMWVDFARWTGIQRTRE
Sbjct: 359 SLMWVDFARWTGIQRTRE 376

The following BLAST results are available for this feature:
BLAST of Cucsat.G12123.T4 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94CJ52.4e-4969.12Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q9SIY53.3e-1939.71Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q8RWG34.1e-1738.97Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
Q9C9Z36.1e-1334.59Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
B9DFK52.3e-1236.57Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=... [more]
BLAST of Cucsat.G12123.T4 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149738.11.50e-86100.00protein RETICULATA-RELATED 4, chloroplastic [Cucumis sativus] >KGN58569.1 hypoth... [more]
TYJ99870.12.13e-8699.28protein RETICULATA-RELATED 4 [Cucumis melo var. makuwa][more]
XP_008461823.14.28e-8699.28PREDICTED: protein RETICULATA-RELATED 4, chloroplastic-like [Cucumis melo] >KAA0... [more]
XP_022934115.11.52e-8294.20protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita moschata][more]
XP_023526496.11.57e-8294.20protein RETICULATA-RELATED 4, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G12123.T4 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCC37.28e-87100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G686720 PE=3 SV=1[more]
A0A5D3BJ781.03e-8699.28Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7TXM92.07e-8699.28Protein RETICULATA-RELATED 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A1S3CG262.07e-8699.28protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1F6R67.38e-8394.20protein RETICULATA-RELATED 4, chloroplastic-like OS=Cucurbita moschata OX=3662 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021825Protein RETICULATA-relatedPFAMPF11891RETICULATA-likecoord: 20..107
e-value: 3.4E-27
score: 95.4
NoneNo IPR availablePANTHERPTHR31620PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATEDcoord: 19..157
NoneNo IPR availablePANTHERPTHR31620:SF8OS05G0388600 PROTEINcoord: 19..157

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12123Cucsat.G12123gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12123.T4.E1Cucsat.G12123.T4.E1exon
Cucsat.G12123.T4.E2Cucsat.G12123.T4.E2exon
Cucsat.G12123.T4.E3Cucsat.G12123.T4.E3exon
Cucsat.G12123.T4.E4Cucsat.G12123.T4.E4exon
Cucsat.G12123.T4.E5Cucsat.G12123.T4.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12123.T4.C5Cucsat.G12123.T4.C5CDS
Cucsat.G12123.T4.C4Cucsat.G12123.T4.C4CDS
Cucsat.G12123.T4.C3Cucsat.G12123.T4.C3CDS
Cucsat.G12123.T4.C2Cucsat.G12123.T4.C2CDS
Cucsat.G12123.T4.C1Cucsat.G12123.T4.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12123.T4Cucsat.G12123.T4-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane