Cucsat.G11580.T15 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G11580.T15
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionMADS-box transcription factor 1
Locationctg1820: 624803 .. 633023 (+)
RNA-Seq ExpressionCucsat.G11580.T15
SyntenyCucsat.G11580.T15
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTTAAGCTGATTGATACAACAAAGTGAGAACCAAATGGGTGTGTGATTTTAAAAGGTTTGAGAAGGCAATCCCACGCGGAGGGCAGCATAAGAGAAGGTGGTGACCAACTGGAAAGGACCCACGTGGAAATGGAGATAAAAATATCATGTGGTTATCGAATACAATGTGAACGTGTACCACACGCGTGACACAAGGCGTGAACGAAGCATCTTAGGGAAAAGGAAAAAAGAAAAACCAGGCTGTTTTATATCAAAGTAGAAACAAGAAGAAGAGCCCTAACCCTGACTTCTTCACATTATTTCTGGGTGAAGATTGGAAATTTTCAACTTCTTAAAACCCAAACAAACAACAACAGCAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAGAGAAACAAAACCAACCAACACCCCCCCCAAAAAAAAACTTCAATTCTATTTTTTATTTTCAAAGACCTCATCTTATTAGGGTTTTTTTTTTTTTTCTTTTTCTTTTCTGAAATCCCAAAAACAGAGTATCACAAAGTTAGCTACACTTGGAGGGTACCAGCAGAGGAAAGAAAAGAGGGATAATCAAGAAGGAAGAAAGGATTTTTGGGGTAAGAAAAAAAAAACAAATAAGAAAGGGAGTTTGGAGATTTAGGGTAAATAATTGAAAGAGGGAAGAGGTGAGTTGGAGGGGTGGGGATTTTTTTATTGACAAAAAAGAACAAAAAGAAGGAAAGAAAAAAGGAAAAAGGAAAGAAAAGAAAAAAAAAAAGAATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCAAATCGTGGCAAGCTCTATGAATTCTGTAGTACTTCCAAGTATATTCTCTATCTCCTTCTATTTTATTTTATCTTTCTTCTAGGGTTTGGGTTTTTTCTTTTCTAATCTTAGATGAGAAGAATTTGGAGATTTTAATGATGTATATAGTTGTAATATGGGTTGTTATGTGCGTTTGGATCCATATCAGTATGCTTAAAACGCTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTTACAAAACCGGCTAAAGAACTCGAGGTTAATTTTACATTTTTTCTTTGTTCAAGTTTTTATAAAAATCTTTTGAAATTTAGATCTTGATTTGATTTTTGGTTTATGGTTTTTTTGGGGTTTATTTTTGCAGAGTAGTTATAGAGAGTACTTGAAGCTGAAGTCTAGGTTTGAGTCTCTACAAAGAACTCAGAGGTAAATATTTTAACCATTTTTTTCTTGCCATAATATTTCTTTTTCTTCAATTATATATCTAAATAATCAGATAATTTACCTAATTATTGGAAACCATTTTAGTTTTGGTAGTTTTTTTAAAAGTTTTTTATAAATAAAACCATCAACACTTGTTTCACTTTTGATTTCTTTCTTTCTTTCTTTCTTTTTTTAAAAAAATCAAGCCAAAATTTAAAAATTAAAATGATAGTTTCTATAAATTTGTTTTTGTTTTTTTGAATTTGGCCAATAATTTGACTCTTTGGCCTAAGAAATTTGCAACTTATTGTAAGAAATTAAAAGAAAAGAAAAGAAAATTTAATTTTTGAAATATAAAAGTAAAAAAAGAAAAAAATATATTTATCGAATAGAGTCTTAGTAACATTTTAAAATAGAAATTACCTTTAATAGTGAAAGTTTTATCTAAAAAACAAATAATATTTACATACAAATTATTGTAGATAGTTAATTCAAATTACAAAACTTGAACTATGTAAGAAACCTAAACCAGCTAACTGCAGATCTATTTGGAATCTAATTTGCTTCTTTATTTATTTAATTAGTAATGTTTAAACTTGTTTATTTCTGAAGCTCGTTTTATAAATGTGAATTACTCATTTTCAAGGTTTTTGTTCTTGAAATCTAGAACAGATTTTAAAAAATGTCTATATATAATAAAGAAGAAAATTGATGGTAAGATTTTCTTTGAGAATATTTTCATTTAAAATGGTTTCTTTACAAGTCTATTTTTGTTTCCAAAACTATTTTCAAAAGAATTTTTGAAATAGTGATCAAATGTAGCTCTAAACATTAATACTGTCCTATATATATATATATAAAAGTAAAATTTAAAAGGAAACCACCATATAAAGGAAAGATACATCTCAACATATCCAATGGTCATGAGAGTGTGGTTACCATATTTGTGTTTTGGTCATTCATAATGTTCTTGGTTTTGTAAACTTGTATATTTTCTTATTGAGAGTGGTCTCATGTAAAAGGATGGGTGGATTTGAATTATTAAGCCCTTCCTTGGAAATCATTTTGTTTTTTAGGTTTGATTTTTGAAAATTAAGCTTTATTTTTTTAAAATTTTCTCACCGCAATAAGCTTGCCAAGTAATTCTATATATAAACAAGTTCTAAAGAAATATGTATATATATTTCAAATTTTGGTTTTTTTTACGATGGACAGAAAGTAGATAGCAAAACAAGAAATTTAGAGTTTGAATGAGTGTTTATAGGTTTAATTTTCAAAGACTAAAAATAAAAGTTCTAATAGTAACCAAAGGCGGGTGCATAAACGTTTCCAAAGTTGTTTAAAAGAGTTTATTTGTAATTCATGTTTGATATAGTTCTTGACAACGGAATGTTGGGCGAAGTAGTTGACGAATATAAAAAGGGCAAAAATCTTTGTTAGAGATGATGAAATCTAGGGTTCTCATTATAAAGCCTCATTTTAAAGTTGTTCAACTAATTATATAAAAGTTGATTAATCAAATGTATTAAATTTCCTGAAAGACTTTTGAGGTTAATTCTAAATAATATGCATACTCTCATAGTAAAAAACGAAGATTTACCTCTAAGTTACAATTAAGATAAACATGAACATGCTGATCTCTCACATTTGTCTATAGAGAAATAGGTATGCTCAAGAATGCTTATAGAATAAACCTCTTAGGCAAAAGCACATTGATTATAACCACTTTTAATAACAAAGAAAATGTTTAGATTAAGGCCTTTCTTGGGCAAAATTCAGTTTTTATATATTAAAAGTACTTTCTAAACAAACATATCTGCACCCAAAACCACTCTCCAAGTTCTTCTTTACAAGATAATTGCAATTACATTAGACTTTTTTGGATAGTACTTTTATGGTTACATGGAAAGCAAGAAATTTTTTAAGAGAAAAGTAGTTTGAAACCATACAAAAATGATTTTGACCAAACCAAAACCATATAATTGCTAAGGTTAAAAAAATTTATTTGTGTTTATGGCAGAAACCTTCTTGGGGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCTACCAAGGTAGGTTTAATCCTTTCCGATAATGACTGTTTTGATCTATTGTTTGATAGTTATTTGGTTTTTGAAAAATTAACTTTATAAATATACATTCTTCTTTTGAAAGAGTTATTTTAAACTTGTGTAAAGTTTTTAACGAAAAAAATAGTTCTTGAAAACCTTTTTTTTAAAAAAATTGTTTAAGACTTCTAAAGTCTAAAATGATAAAAAAAAAAAAAACTCTTGAATGACAATTGAAAAAACCAAAAACCAAAATTAAAGGCCTATTTGATATAAACTTTTCGTTTTTAATTTTCTGCATTATTCAAATTTGAAAACTAAAATCAAGTTTTTAAAAACTAAATAAGTTTATAGTTTTAAAAACTTTTCCCAGTTTTGAAACAAAAGTAGATAATAAAACTAAGAAACTTATAGGTATGGTTTATAAACGTGAGTTCAAATTGTGCTGGAAATAAATTTAGTTTATTTATTTCACCAATAACTACTTTTTAAAAAGTATGATTTTGGGTGATGAGCCAAGTAGATATACAAAATCTCATAGTATTTTGATGAAATATTATGGTTGAAGTATCAATTAATATGCAATAGTTTTTGTTATTTGTTGCCAACTTTTTAGAATTGGGTTTGTTTGATTTTAGTTTATTAAATTTGTATAAATTCTTGAAAGTTAATTTTTTTCTCCAATTCGATTTTAGTTTCTTATTTTTCAAAACATCAACATATTTGCTTCTTCATTCTGCTTTTACTCATAAAATGGATATATAATATGCCAACAATAAGTACACAACTATTTCGATATTCTGAAGGATTAATTTTCCAATAACTTCTTTTTGTCTACAATGTTTTAAAACTAACGCATAGTTTTAATTACATAGAGAAACCTAAATTTATATGAATGTTCATTTAGATTATAGATTTAAAAGTTTCATATTCAAACTTTACAGATTAAATACTTTTTTGGACATCTTAATACAAATCATTTATTCATTTAAAACTTTTGATTTTTTTGTTTTTCTAATTTGGTTTTGTATACTTTTAATGATATTTTGGAGTGACTACGACTTTAATCTCTTAACACTCCAATATATTGAAGAAAATAGGTTTGGGAATTTTTGGAGTACAAGTTCTCATAATATTTTTAATGGTTTTAATATACTGTTCATGAAATTGTTGTTTGAATTTAAGTGATAGATGTTAAATGGACAACATTTTCACTATCTATAATAGATAAAAGATTATCTAAGAAATGACTTTTCATATCTACTTGATTGTTTGTTTTATTGTTTACCTTTTCTCAATATTTTCAAAATATAAGTCAAATTTTGAAAATTAGGTTTCATTTGATTACCATTACTTCTCTGCATGTTGATTTCCTTGGGTTGTTTATTATTATTTTGTTTTGCATTCCTAAATACCAAAGTAAGCAAACTAGGCAAAAGGCAAAGTTGTTTTTAGAATTTGGAATTTTACTATGAATTCATTTGTTTATTTAGGAAAGATGATAAAACTATTATAAAAAATGTTGCAATAAAATAAGCATAATTTTCAGGAAAAAAAAATCAAAAAGACAAATGTGCCTAAAAAATAGTTTTTAGAAATTTGTTGTTTTTACTTTCTATATTTAGAATGTGGCCATGAATTCTACTGTTTAACTTTGTGGAAGGATGAAACTCATGATTAAGAAATTGTGAGAAATCAAATATAATTTTGCAATCTAAATGCCAACAAACGTAAAAACATGTTTTATAAGCTTATTTCTTTATTTTGTTTTTCGTCTAGTTTTCTCTATCATCTTTCTTAAGTTAAAGAGTTGAGTTCTTGAGGATATATGAACACAGTTGAGATGTGCATCCTCCCTTCCATTTATTTAGTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGATAAAAGTTAATTTTTTAGTCAAATTTGAAAAACAAGAACAAACATTTAAAACAACTTCGTTTAATTTTTAAATTTTGGTTTGGTTTTAAAAACAGCCTTTAATCTAATCAACCAAATTTAAAAATCAGTAGAAGAATGGTTAGTAGGTGAATGTTTAGATTTTTAGTTTTGAAAATTACTTATTTTCTGCCAATTTCTTATATATGCTTGCACCTTCTTCCTTAAATGAAGAAGTAACTACTGAGAATAAAAAAATAAACTAATTAGTTTTTAGTTTTCAAAACTTTTGCTTGGTTTTTTGAAATACTAGTAAGAAGATAACGATGGGAGGAAGGAGTGTTTATAGTCAATTTTTAAAAACTAAAATATAAAAACTCAAATGTTAACCAAAAAGGTTTCAAGTAGTTATCTAATGAACCAAAGTAATTACCTTGATTTGAATTAGTAATTCTTAGTAGCTATTTTGTATTTTTGCTTTTGAAAATTAAACTCATTGACACCTCTTTTATCTTTTTTTTTTTCCTGATTTAAAAAATCAAGGTAAAGTGTGAAAACTAAGAAATGTTATTGAACTTTTATTTTAATTCTTGAACTTAAGTCTGAACGTCTTGTCTCTAACAGTATCTATGTGGCTGTGGTGTGTCTCTGTCCATTTAAAAGACAATTATTGAAGCTTTTCACTTTTGTACTTTGAATATGCTTAACCAGAATCTGGCAGTTTAGTACACTATCCAGTTGCTCTGTTTCTTAATTAATACCCTTATTAAACTTCCACTTCTTTTTGTTTTTAACCACAAGTTTTATAGCTACAAAGTTCAACGCACTCTTTTAACTTATGGCTTTTATGGGAAATCTGTTTTACTCAGCTGTAGAATTGATCTTGATAAGATTATTCAAACGTTGTAGTTTGTGTAAATTGGTGTTTAGTTTTGAGCTTATTATTTTAATCTGACACTACCAGTATTAAAAAGATTCAATTGCAATTTTACTCCCTGTAGTGTTGGCCAAATAGTTTGTCTTAAAAGTTAAGAATCTAGCATTTTGATTCAATAAAGCCTTCAAATGATCCTTATGATTTGATAAAATCATATCACAAATAGTCTTTTACTATAAGAGTTACTTATGAGGCTTCATCAAACCAAACCGTAGGGACTGTCTGTTTAAATGATTAGAAACTATTTTATAATTTAACCTATTGAAAACTACTTATACAACTTCTTTCCAAACAAATGCTTTTGTTTGTGCGTGGTGATATTTTTATATGTATTTGAGCTCTTAGATATGTATGGCTAGTTAGTTCCATTTTTCTGTGGCTTCATTGTTGAGCTTCTTTTTAGGTAAAACTATTTATTGAATGTCTCATCATAACGGTTGAATGTAGATTCTTAAACATGCATGCAAGTTTCTAATAACTATTACAGTTTTTCACTCCAAGTTTCTCCATAAAAGCAAATGTTTGACTGAAAAAAGAAGTACACAAGGCTAGTATATGACCCAAACTCCTCTTTATTAGCTGATATACAATTAAATTTATGTTCACCTATTAGCTTATGCTTTTTAGTCAAGAGGTGATTAAAGACTCTTTGGACCTATATCTTATGTGATCTTAAGAAAACCTAGGTTTATGTACTTTGTAAATCAATGTATGAACAAAACACTAATTGTTCTTTTTTTTAAAAAAAATATTTTGTGATTGACTAGTCGTTATCTTAGCTAAGGACATGTATAATTTGTCAATTATGACCAAATTGTTGAAAATTTGGAACTTTGCAGACTCAGTACATGCTGGACCAACTATCTGATCTTCAGAACAAGGTAGGTTGAGTTCATATCAAGTTTTAATGGTGAATTCAAAATCATTTTGTTGAGCTATAATATATATATATATATATTTATCCTAAGTTTTAAAATCTTTTGTCAAGTACAGGAACAAATGCTGATTGAAACTAACAGAGCTCTGCAAATAAAGGTAATTAATCAACATTTCTTTTCCTAAGACAGCCTAAACTTGAAATTTACTGATTCTCAAACTTTAAGAAGAAGAAGAAAAAAAAGAAAACATCTGTCTGCCTTATGGGACATTAGTGAAGTTTCCATTGTGTAACAGTTTTAAGGTATGTTTGAGAATATTTGAAAGTCTATACTTGAATTGTCTCGCAGTCCTAATGTTGATGTATTTATCTCTTGCTCTGGAAAACATTTGTTAAATCCCATCTACTTAATGGTGAAATTAATGATGGAAACTTAAAAAAATCATATCATATATGTTAAATGATGAAAATATCTTTCTCCAATTTAAAATAAGCATAAATTTCTTAAAAGTAGTGATATCTTTGTTATATATTGTGAGGAGTATTTAATATTAGAATGGAAATGTTGATGTATACTTCACATCGTTGTCAAATCTATAGAAACATGTAGACAATATGGTGGGCATTATGTTGATTGAAAAAACTAAGATGATTATGAATTAGAGTATTAACGGAGATGTTTGCGTTGGTCTTGTGTAATAATGTATGGTTGATCAGCTGGAAGAAATAAGTTCAAGAAATAATATAAGGCTTACATGGGATGGTGGAGATCAAAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGAATGCAACCCCACTTTGCAAATTGGGTAACATTTTTTTTAATGAATTTAAATTATGGTTCTTTGTTGTTTTTGGGTAAGTAATTTGATGTTGGGTTTTAAATAGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACTACTACTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGATTGAA

Coding sequence (CDS)

ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCAAATCGTGGCAAGCTCTATGAATTCTGTAGTACTTCCAATATGCTTAAAACGCTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTTACAAAACCGGCTAAAGAACTCGAGAGTAGTTATAGAGAGTACTTGAAGCTGAAGTCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAACCTTCTTGGGGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCTACCAAGGTAGGTTTAATCCTTTCCGATAATGACTGTTTTGATCTATTGTTTGATAGTTATTTGGTTTTTGAAAAATTAACTTTATAA

Protein sequence

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKVGLILSDNDCFDLLFDSYLVFEKLTL
Homology
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BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match: Q8LLR2 (Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 1.0e-66
Identity = 134/148 (90.54%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELE-SSYREYLKLKSRFESLQRTQRNLLGEDLGPL 120
           S+MLKTLERYQKCSYGAVEV++P+KELE SSYREYLKLKS+FESLQRTQRNLLGEDLGPL
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYREYLKLKSKFESLQRTQRNLLGEDLGPL 120

Query: 121 NSKELEQLERQLESSLKQVRSTKVGLIL 148
           N+KELEQLERQLE+SLKQVRSTK   +L
Sbjct: 121 NTKELEQLERQLETSLKQVRSTKTQFML 148

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match: P29382 (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana OX=3702 GN=SEP1 PE=1 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 5.6e-65
Identity = 130/148 (87.84%), Postives = 139/148 (93.92%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SNMLKTLERYQKCSYGAVEV-TKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPL 120
           SNMLKTL+RYQKCSYG++EV  KPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 NSKELEQLERQLESSLKQVRSTKVGLIL 148
           NSKELEQLERQL+ SLKQVRS K   +L
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYML 148

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match: P29384 (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana OX=3702 GN=SEP2 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.5e-65
Identity = 129/148 (87.16%), Postives = 138/148 (93.24%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEV-TKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPL 120
           SNMLKTLERYQKCSYG++EV  KPAKELE+SYREYLKLK R+E+LQR QRNLLGEDLGPL
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 121 NSKELEQLERQLESSLKQVRSTKVGLIL 148
           NSKELEQLERQL+ SLKQVR  K   +L
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYML 148

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 229.6 bits (584), Expect = 2.7e-59
Identity = 123/150 (82.00%), Postives = 137/150 (91.33%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SNMLKTLERYQKCSYGAVEV---TKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLG 120
           S+MLKTLERYQKC+YGA E    T+ A E+ SS +EYLKLK+R+E+LQR+QRNLLGEDLG
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEI-SSQQEYLKLKARYEALQRSQRNLLGEDLG 120

Query: 121 PLNSKELEQLERQLESSLKQVRSTKVGLIL 148
           PLNSKELE LERQL+ SLKQ+RST+  L+L
Sbjct: 121 PLNSKELESLERQLDMSLKQIRSTRTQLML 149

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match: O65874 (MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-58
Identity = 121/151 (80.13%), Postives = 137/151 (90.73%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVE---VTKPAKELE-SSYREYLKLKSRFESLQRTQRNLLGEDL 120
           S+MLKTLERYQKC+YGA E    +K A  LE SS +EYLKLK+R+ESLQR+QRNL+GEDL
Sbjct: 61  SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query: 121 GPLNSKELEQLERQLESSLKQVRSTKVGLIL 148
           GPL+SK+LE LERQL+SSLKQ+RST+   +L
Sbjct: 121 GPLSSKDLETLERQLDSSLKQIRSTRTQFML 151

[Close]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match: XP_022155022.1 (developmental protein SEPALLATA 1 [Momordica charantia])

HSP 1 Score: 270 bits (689), Expect = 7.69e-89
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match: NP_001267667.1 (developmental protein SEPALLATA 2-like [Cucumis sativus] >AAF23363.1 CAGL2 [Cucumis sativus] >KAE8649327.1 hypothetical protein Csa_015352 [Cucumis sativus])

HSP 1 Score: 267 bits (682), Expect = 8.92e-88
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQL SSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLVSSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match: AXR70631.1 (MADS-box 9 [Momordica dioica])

HSP 1 Score: 267 bits (682), Expect = 9.85e-88
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQL SSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLVSSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match: XP_022955902.1 (developmental protein SEPALLATA 1 isoform X2 [Cucurbita moschata] >XP_022980708.1 developmental protein SEPALLATA 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 266 bits (680), Expect = 1.80e-87
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLK+RFESLQ TQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match: XP_008464576.1 (PREDICTED: developmental protein SEPALLATA 1 [Cucumis melo])

HSP 1 Score: 265 bits (678), Expect = 3.62e-87
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRG VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGIVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREY+KLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYVKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match: A0A6J1DN93 (developmental protein SEPALLATA 1 OS=Momordica charantia OX=3673 GN=LOC111022168 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 3.72e-89
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match: Q9SEG4 (CAGL2 OS=Cucumis sativus OX=3659 GN=CAGL2 PE=2 SV=1)

HSP 1 Score: 267 bits (682), Expect = 4.32e-88
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQL SSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLVSSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match: A0A346NTN8 (MADS-box 9 OS=Momordica dioica OX=654836 PE=2 SV=1)

HSP 1 Score: 267 bits (682), Expect = 4.77e-88
Identity = 142/147 (96.60%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQL SSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLVSSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match: A0A6J1J038 (developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479996 PE=4 SV=1)

HSP 1 Score: 266 bits (680), Expect = 8.70e-88
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLK+RFESLQ TQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

[Close]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match: A0A6J1GUW6 (developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457748 PE=4 SV=1)

HSP 1 Score: 266 bits (680), Expect = 8.70e-88
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLN 120
           SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLK+RFESLQ TQRNLLGEDLGPLN
Sbjct: 61  SNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQTTQRNLLGEDLGPLN 120

Query: 121 SKELEQLERQLESSLKQVRSTKVGLIL 147
           SKELEQLERQLESSLKQVRSTK   +L
Sbjct: 121 SKELEQLERQLESSLKQVRSTKTQYML 147

The following BLAST results are available for this feature:
BLAST of Cucsat.G11580.T15 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LLR21.0e-6690.54Agamous-like MADS-box protein MADS2 OS=Vitis vinifera OX=29760 GN=MADS2 PE=2 SV=... [more]
P293825.6e-6587.84Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana OX=3702 GN=SEP1 PE=1 S... [more]
P293849.5e-6587.16Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana OX=3702 GN=SEP2 PE=1 S... [more]
Q034892.7e-5982.00Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE... [more]
O658741.7e-5880.13MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1[more]
BLAST of Cucsat.G11580.T15 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155022.17.69e-8997.28developmental protein SEPALLATA 1 [Momordica charantia][more]
NP_001267667.18.92e-8896.60developmental protein SEPALLATA 2-like [Cucumis sativus] >AAF23363.1 CAGL2 [Cucu... [more]
AXR70631.19.85e-8896.60MADS-box 9 [Momordica dioica][more]
XP_022955902.11.80e-8795.92developmental protein SEPALLATA 1 isoform X2 [Cucurbita moschata] >XP_022980708.... [more]
XP_008464576.13.62e-8795.92PREDICTED: developmental protein SEPALLATA 1 [Cucumis melo][more]
BLAST of Cucsat.G11580.T15 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DN933.72e-8997.28developmental protein SEPALLATA 1 OS=Momordica charantia OX=3673 GN=LOC111022168... [more]
Q9SEG44.32e-8896.60CAGL2 OS=Cucumis sativus OX=3659 GN=CAGL2 PE=2 SV=1[more]
A0A346NTN84.77e-8896.60MADS-box 9 OS=Momordica dioica OX=654836 PE=2 SV=1[more]
A0A6J1J0388.70e-8895.92developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1GUW68.70e-8895.92developmental protein SEPALLATA 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 121..141
NoneNo IPR availablePANTHERPTHR48019:SF87DEVELOPMENTAL PROTEIN SEPALLATA 1coord: 1..147
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..147
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 67.51
coord: 3..23
score: 68.71
coord: 23..38
score: 86.34
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.3E-41
score: 154.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 1.5E-26
score: 91.7
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 33.529243
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 84..146
e-value: 6.3E-20
score: 71.2
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 87..168
score: 11.147534
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..85
e-value: 4.1E-28
score: 99.0
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 2..77
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..76
e-value: 4.27145E-44
score: 138.454

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G11580Cucsat.G11580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11580.T15.E1Cucsat.G11580.T15.E1exon
Cucsat.G11580.T15.E2Cucsat.G11580.T15.E2exon
Cucsat.G11580.T15.E3Cucsat.G11580.T15.E3exon
Cucsat.G11580.T15.E4Cucsat.G11580.T15.E4exon
Cucsat.G11580.T15.E5Cucsat.G11580.T15.E5exon
Cucsat.G11580.T15.E6Cucsat.G11580.T15.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11580.T15.C1Cucsat.G11580.T15.C1CDS
Cucsat.G11580.T15.C2Cucsat.G11580.T15.C2CDS
Cucsat.G11580.T15.C3Cucsat.G11580.T15.C3CDS
Cucsat.G11580.T15.C4Cucsat.G11580.T15.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G11580.T15Cucsat.G11580.T15-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding