Cucsat.G11411.T8 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G11411.T8
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionEukaryotic translation initiation factor 5A
Locationctg1798: 731510 .. 734038 (-)
RNA-Seq ExpressionCucsat.G11411.T8
SyntenyCucsat.G11411.T8
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATACGTGGCCGGTTGAAACGTGATGCTATAAATTGGTCTCGTCCTCTTGACTCGTACTCTCCTCCTTCCTCCCGTTTTCCTTCCGCTTCCACCGAAATCCCACTGTGAACACAGAAGAAGAAGCCCACCGGAGGCTGTAGAAGAACGAAATCAATCTTTAGTCATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACGTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGATTTGTTTGTGTTTATTGCGATGATTTGATTTTTTTTTTCTCATCGGTTGTGTTTGTTTTATTGTGTGGTTTGATTTATGTTGTTTAGGGTTGAGTTTTGGATCGAGCGATTTAGATCTTTGATTGATATTCGAGGGTTTTCTTTTTCTGGATTAATGATTCTTATACTGTAAGTTTTTTTCTTCTTATGATTTTTGAGTCTTGGATTTGGAGAAATTGATGGATCTGATGTTGAAATTGACATTGACGATTATTCGGATCAATATTTGTTTGGAGTTTGGGGATTTTGTAATTATGACTTCGAAAGATCTCTTGATGGCTGAGTTTCGATTGGTCAACGATAAACAGTGTGTTATATTATCCTCTAATCCTTCCTATGAGGATGCTGGTGTTTATAGTTGTTTACAGTGTAGTTTTAGTTTAATATTGATTTTATCTGGAGAAGATAATTTCCACAGTGTCGTGTTTTTTCCTTTTTGGGTATTTCTTTGTCACCAGCCACACGGGGGTGAGTTTATGTTTGTTTGAGACTGTTATTGCTACCTGACATTAATTATTGAAAAAGTATAACGAGGGTCCAAAAGGACAAATTGATTAATACTACTAAATTATAACTTTAGGCATTGAAGTGGATAAGCACTTGATCTTCCTTAATTTGAAAGTGTACTCTCTAGAAGGCATTTCTGCATACCTAATCCCACTAATTTATGTTACTTTTCTTTGGGTTGTATGGTAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGGGAGTCTATTATAAAGCCTTCAAACTATTCATCTGTAACGATTTACCATTTTCACTAACGGTCTTTGTTTCATGGTTTGTAGGTGCCCCATGTTAATCGTACTGATTATCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTACCTTGTTTTTATGGAGTTTGTTTGACTTGTTGGGTCTTGCTGTTTTCAAGAAACTTATTCATAACGATATAATGTTATATCTGTTTTATTAGATTTCTAGATTTATTTGGAAGTTTTCATGCTTCAGATTGTTTTGGTAATCAATTTTATCTGTGAAACCCTGTTAGATAGATTGTTTGTCCAGAATGTAATTTGGAAATAAAGGAGCAAATATTTGTGTGGAGAGATTGTTATACAATCATAGATGGAGAAGGAAGCAATGAATCATTTATATGTGTTGAAGTGTGTAAAGCCTCGTTCCATTATTTGAATGATGTTTTTCTTTGGGTGCAGGTGAGTCTTTTAACTGACAGTGGTGATACCAAGGATGATCTGAGACTTCCAACTGATGATAATCTGCTCAAACAGGTAAAGGCACACATGTACACTTGAAAAGAACAATCCGTGCACTCGAGATAGTTTTGTATATTTGAAAAAGAGCTTTGATGAAGTTAATCGTGCAAGCATCATTATTTTTTCCTTTTTGTAAGAGGGAACCTCATTCCTTCTGTTTCCATTTCATGCTTAATATTCCATTCTCAAGATATTGTGAAGATATGGTCATATGGGTTTATTCCTCAATATCATGTTCTTGTGATGATGATTTACCAATATAAAAACAAAAGCTGAACATGTCCTTTGTATTCACAGATTAAGGAAGGATTTGCTGAAGGAAAGGACCTTGTCGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTCAAGGATATTGGCCCGAAGTAGGTCTTGTTGCACACAAAGTTAAAAGTTGTGGTCATCGACTGCTTTTTATTGCCGAATTCCTCTATTGAATCTTTTAAATGATGGTATAATTAATTAGCAGACTCTGTATCTGTTAACGCCTCATTCTTCTCGTCCCTCCATTCCCTTTCTCCCTTCTCTTCTCATCTCATCTCATCTCATCTCACCTTCTGGCCCAGGATGTATGGTTTGTTCGTGCATCATTACTGTGCTTTATGTTGTGTTATTTTATGATATTGGGTGTAATGTTATTGGGTTTTTGGATGCTTACTTTGATAATCGAAGTGAATAATTTTTGCGAAATCATCAGTTGTCTCCTGAAATTCGTTCTCTTAGTGCTTTAGAGTTGGAACTGTATTCAATTTTCTTTTGGGTTAGTGGTGGGATTTGGAAATTACACTTGGTTGTTTTGAC

Coding sequence (CDS)

ATGTCGGACGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGAGCCTCCAAGACGTACCCACAACAGGCCGGAGCTATCCGGAAGAACGGCTACATCGTCATCAAGAACCGTCCATGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGAAAGCACGGCCATGCTAAGTGTCACTTTGTTGGAATTGACATCTTCACTGCCAAGAAGCTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTAAGGGAGTCTATTATAAAGCCTTCAAACTATTCATCTGTAACGATTTACCATTTTCACTAA

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVRESIIKPSNYSSVTIYHFH
Homology
[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-41
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 84
          V IDIFT KKLEDIVPSSHNCDV
Sbjct: 61 VAIDIFTGKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-41
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 84
          V IDIFT KKLEDIVPSSHNCDV
Sbjct: 61 VAIDIFTGKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match: Q9AXJ4 (Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-41
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKT+PQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 84
          VGIDIF  KKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFNGKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match: Q9AXQ3 (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-41
Identity = 79/83 (95.18%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 84
          V IDIF AKKLEDIVPSSHNCDV
Sbjct: 61 VAIDIFNAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-40
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 84
          V IDIFT KKLEDIVPSSHNCDV
Sbjct: 61 VAIDIFTGKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match: KJB53263.1 (hypothetical protein B456_008G195800 [Gossypium raimondii])

HSP 1 Score: 173 bits (439), Expect = 4.78e-54
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDVRES 86
          VGIDIFT KKLEDIVPSSHNCDVR +
Sbjct: 61 VGIDIFTGKKLEDIVPSSHNCDVRNN 86

[Close]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match: KJB53261.1 (hypothetical protein B456_008G195800 [Gossypium raimondii])

HSP 1 Score: 173 bits (439), Expect = 5.58e-54
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDVRES 86
          VGIDIFT KKLEDIVPSSHNCDVR +
Sbjct: 61 VGIDIFTGKKLEDIVPSSHNCDVRNN 86

[Close]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match: KJB17392.1 (hypothetical protein B456_003G098700 [Gossypium raimondii])

HSP 1 Score: 172 bits (437), Expect = 1.32e-53
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match: XP_004145502.1 (eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypothetical protein Csa_012217 [Cucumis sativus])

HSP 1 Score: 174 bits (441), Expect = 1.68e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match: MBA0609022.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 172 bits (437), Expect = 2.56e-53
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match: A0A0D2RQ09 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_008G195800 PE=3 SV=1)

HSP 1 Score: 173 bits (439), Expect = 2.31e-54
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDVRES 86
          VGIDIFT KKLEDIVPSSHNCDVR +
Sbjct: 61 VGIDIFTGKKLEDIVPSSHNCDVRNN 86

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match: A0A0D2TFD5 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_008G195800 PE=3 SV=1)

HSP 1 Score: 173 bits (439), Expect = 2.70e-54
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDVRES 86
          VGIDIFT KKLEDIVPSSHNCDVR +
Sbjct: 61 VGIDIFTGKKLEDIVPSSHNCDVRNN 86

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match: A0A0D2MH63 (Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B456_003G098700 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 6.38e-54
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match: A0A0A0L5K9 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G651970 PE=3 SV=1)

HSP 1 Score: 174 bits (441), Expect = 8.16e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

[Close]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match: A0A7J8R6P5 (Eukaryotic translation initiation factor 5A OS=Gossypium davidsonii OX=34287 GN=Godav_021155 PE=3 SV=1)

HSP 1 Score: 172 bits (437), Expect = 1.24e-53
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0 

Query: 1  MSDEEHHFESKADAGASKTYPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
          MSDEEHHFESKADAGASKTYPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1  MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61 VGIDIFTAKKLEDIVPSSHNCDV 83
          VGIDIFTAKKLEDIVPSSHNCDV
Sbjct: 61 VGIDIFTAKKLEDIVPSSHNCDV 83

The following BLAST results are available for this feature:
BLAST of Cucsat.G11411.T8 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P690395.8e-4195.18Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40... [more]
P690405.8e-4195.18Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI... [more]
Q9AXJ47.6e-4193.98Eukaryotic translation initiation factor 5A OS=Manihot esculenta OX=3983 PE=2 SV... [more]
Q9AXQ39.9e-4195.18Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE... [more]
P563372.2e-4093.98Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI... [more]
BLAST of Cucsat.G11411.T8 vs. NCBI nr
Match NameE-valueIdentityDescription
KJB53263.14.78e-5495.35hypothetical protein B456_008G195800 [Gossypium raimondii][more]
KJB53261.15.58e-5495.35hypothetical protein B456_008G195800 [Gossypium raimondii][more]
KJB17392.11.32e-5398.80hypothetical protein B456_003G098700 [Gossypium raimondii][more]
XP_004145502.11.68e-53100.00eukaryotic translation initiation factor 5A [Cucumis sativus] >KGN55431.1 hypoth... [more]
MBA0609022.12.56e-5398.80hypothetical protein [Gossypium davidsonii][more]
BLAST of Cucsat.G11411.T8 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0D2RQ092.31e-5495.35Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B... [more]
A0A0D2TFD52.70e-5495.35Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B... [more]
A0A0D2MH636.38e-5498.80Eukaryotic translation initiation factor 5A OS=Gossypium raimondii OX=29730 GN=B... [more]
A0A0A0L5K98.16e-54100.00Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_4G... [more]
A0A7J8R6P51.24e-5398.80Eukaryotic translation initiation factor 5A OS=Gossypium davidsonii OX=34287 GN=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5A-likeTIGRFAMTIGR00037TIGR00037coord: 17..93
e-value: 1.6E-26
score: 90.6
IPR001884Translation elongation factor IF5A-likePANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A FAMILY MEMBERcoord: 1..83
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..84
e-value: 1.5E-42
score: 145.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR11673:SF42BNAA07G09420D PROTEINcoord: 1..83
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 15..83

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G11411Cucsat.G11411gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T8.E1Cucsat.G11411.T8.E1exon
Cucsat.G11411.T8.E2Cucsat.G11411.T8.E2exon
Cucsat.G11411.T8.E3Cucsat.G11411.T8.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T8.C2Cucsat.G11411.T8.C2CDS
Cucsat.G11411.T8.C1Cucsat.G11411.T8.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G11411.T8Cucsat.G11411.T8-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006413 translational initiation
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity