Cucsat.G11063.T13 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G11063.T13
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	WD_REPEATS_REGION domain-containing protein
Location	ctg1740: 777084 .. 781259 (+)
RNA-Seq Expression	Cucsat.G11063.T13
Synteny	Cucsat.G11063.T13

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCAAATAGGGAAATAGTGTAGAAGGGGTGGCGGGAAACGAGTAGGGCTAACAGAGAGGAATCGCAATGACCCAGCCGGTGAAGAAACCCGAAGTGGAGGAACTTTGCTTTGCCCACTCGCCTGAAATCACTACGGAAGACCTAACTCCAGATGAATGCAATAGCACCGTCGAAGACCAAGAGGCGACACTCATTGCTCTAGTCGAGCATCGTACTCGTGAAGTCCACCATCTCCAGCAGCGCATTTCCTACTACACTCGTCAGGTTTTCACTTCTTGTTCCTCTACCTTTCCCTGTCAATTCTTCTACTCCTATTACCCTTCATCTTTTTTATTAATTATTATCATTATACCTGACTGGCAACAATGTCAACTCCCACGCACTACCTCGTCTCTTATCACCGCATTTCTTTCAATCTATGCTGGACTGGTTCCTTTTTATCAACCACGTATTAGAAATGTTATTTTCGTATTTGTGTATTCATATTACTTGCATGAAGTCAGGAATCGAATGTCTTTTAATTTTAGGGCACGTAGAACAAGCTTTATGTCAGGTCTTGAGAAATATTTTGAAAAAAGTAGTATCACTTCATATGCACTTGCAAAACTTCTGCAGCTAGAGGAAGCAGAGAAGCGGTTACAGGAATCTGAATCTTTGTTGGCTCGCTCTCAAGGTCCGCGTTATACTTTGCCATCAAGAAGTTCTCAGGATTGTGGATTCGAATGTGTGGAGGCTGAGCCTACATCAACCTCTCCTATTCATGGCAATGGGGGTTGTTATATACTCTGCCTAGTTAGTTTACGCTGTCTTCTACTATTGCTACTTTTCTAACTATCTCTGATCTCCTATTTTGAATACTGTCAGATTTGGAAGCGAAACCACTTCTTGGTTCCAGTCACAACCCTTCAATTCCCAATCGCTCTAATCTTGCCACTACAGGTGAACAAGAAAAACCTTGTATGGTCACAATTGGGAGAGTTGATGATCAGAGTGATATGAAAAGAAGAAAGTTTGGTAACGCTTTAACCCTCTGTTTAAGTGCTATCGTTTTTCATGACACTTCATTAGTTTCAGATGATGTACTGTACTACAACTTAGGTCCTCCCATGTTTGCACTCATGATGCCTGCATTGTGTATTTCAGAACAAAAAGATCACAAGGAACTGATTTCATTAGTACGTAGTAGCTCTTCCTCATTGACTGCCCAACTGGATGCTAGTTATTATTTTACTAGTCAGCACAAGAGAAAACTGAGAAGCCTTGCTCCAGGTCCAGTCAATGACCAACTTTTTGTTACTAGGTAAACGATAGTTATATTTAAAGACATATAAATGTAGAACATCTGAAAGAATGCACAGAATACAAATGAACATACATATAACAGAACAGGAATATTTATACAAACAAAATATTATGTATGGCCCAAGTTCGGGAAGTATTTCCTAATGTCACCTTAATGGCATTTCTATCAACTGGTTTTTTTTCTCTTGTTAAGAAGCCCCTGCTATTTCTATATGTATAATGTAGAAGATGGTACACAGTGACCAAACAATCTAACAAGTGCTTGATGTTGGGACTTGCGTAGTGCTTTGGATGGAATGATCAACCTGTGGCAAATTCAGTCGAAGGGGTAAGTCTTGCTCCAGCATTTTTTTGACTTGTGTTTAACTTAATCCAAACAGAATATTGTGACTATAATAACCTTTGTTTTAATCTTCAAATGTAGCAATTTAGCTTTCCTTTATAGAATATTAGAATTTAATCTTGAAATATGTGAATGCTCAAATATTTTAAATGTTTTATTTTACAACATTTGTTAATTAATTATGGTTATTTAGATTGGACAGGAAGTAATGGTAAATCTTTGTCCATGTATTTTACAAGATAGGTTAAACCGATTGACTGTGCCCTTGAGCTTTAAACAATTGGTTTAACTGTTACAACTCTAATATTATGGAAAAGTACATGTTTGGTTCTCCAGTACTAACGCTATGACTAATTTCCGTTAATGATATTAGTTGTTAAGGAAAAAGGCTAATTGAAATATGCTATAAATCTACAATCCAGTCTTTCTTACCTATCCAAAAGTTGCATAATGTCAGTTCTTTTTAGAATAATATAGTTGATAAATATAATATGATGGGTTTTGATCACATTTTATTTAATTAGGATAAAATACCTTCTTAGTCCTTGAGGTTTGGACAATAGGTCAATTTAGTCTACTATCAAGTTCCCAATGTTTATGAGATAGTTCATTTAGTCCATATATTACTAGTGTGATGTTTCTTTTGGTGGTTTTTAAGATACAAAGCCCACATTGGAGTTGAAGGTTATTTTATTGTCCCCTGCTTCTCTCGTTTTCATTTTTCAGGTCTTTTGCTTCTCTTCTTTGTGCTACAAACTGTCTGTCTCAAAAGCAGAGGAGATGGCCTGAAGGTATAGCTTGGCACCCGGGTGGAAACAACCTTTTTTCTGTGTACAACGCTGATGGTGGAGATTCTCAAATATCGGTCTTGAATTTCAATAGGACTAAAGAGGTAAGTTGTATGCTGATTATTCTATTTCATGCTTGGTTCCATGTGATACAAATTATTGGCACTACAAAGTATGACGTACCTTCAAAACATTTTATTCTATAACATAAGAGTTTGAGGCTTTTCTATGCGTATATCTATTGACAGAAGGCAAGTGTTACTTTCTTAGAGGATAAGCCTCATGTTAAAGGCATTATCAATGACATTAGTTTCTTGCCTTGGGATTCTGTTCCGTTCATTACCGGTGGCAGTGATCATGCTGTCGTTTTATGGAATATGAGAGATAAATACAACACGTGGAAACCAGAGCTGTTGCACAGGAATCTGCACTCTTCTGCTGTCATGGGTGTCTCTGGGATGCAGATGAAACAAATCGTACTTTCTGCAGGTTCAGACAAGAGACTCCTTGGTTTTGATGTTCAAGTAGGAAGCACACTCTTCAAGCATCAACTAGAGAGTAAATGTATGAGCGTGTTGCCTAATCCATGTGACTTTAACCTGTTCATGGTCCAGACAGGGTGAGAAACACCTTATTTAAAATAAGATTTTTAGTTACGTTTTCTGCAATTGTCTTCAATATTTAGAAGTATGTGCATTGCTTTTTTCGGAATGTGCTTTCTAAATGCAAATACATTTTCAATTGATAAATTTGATTTCCAAAGGAGAAACAAGCAAAATGTCAATATTCAACCAATAGAAATTGACACGCCATAGTTAAGTACTTTCCCTAAATGGAACTTGTTTTTAAATGCATAGATTTGTTGGACCCCTGGAGGGTCTGCTTATGTATGAGACATTGGTCTGTAAAACATTCAAGGGTGCTTTTACTGTCTTATATGCAGGAGTCCAGAAAATCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAACAGTGAATCCCAATCAGCTTTGATAAAGCAGTCATGGTCACCAAATGGATTACACTTAACGTCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGGTATAATTCTCACATGCCATCTCAATCACTTAAAGCTCATCAGAAGCGCGTCTTCAAAGCTGTTTGGCTCCGTTCTCTTCCTTTTCTTGTTTCCATTTCATCTGATTTGAACATTGGACTGCACAAAATGGTCTAGATATTCAATGTGCAAGTTATTAATGCTGCATGCTAACTGCCATAAGAGGGCCATATCATGTTGATGGACGTTTTGGCACTTTCCCTAAACAACTTATCAAGAAGTGATTTAGATACAGTGGATCAAAGGATAGAAGCAAAAAATGGGCTTGAGTTGTTGTCTGGAGGAGTGCAATGGATAGCAATGTGGTTGTGAAGACTTGACGAAGCTTTGGCTTGTTATTTGGTAAGTTTGCGGGAATATATGTAGAAAATTTGTTGATTTTGTTGCCCTACATGTATTTTAAAGGAATTGCAAATTTGTGCTGGTGCCTTCCTGCTATTTGAAACTTATGTAGCACGATCTGACTAGTTGCTATTGAAGGAGAAAATTTCCAAATTGTAAGAGGGATCAAATCACTTATTTGTGCAGTCTTCGCCATTCCAGTTAAGTGAAAAGAATGAGCAGCTGTGCGATGGTGCACTAAGTTAAAAACTTTCG

Coding sequence (CDS)

ATGAGAGATAAATACAACACGTGGAAACCAGAGCTGTTGCACAGGAATCTGCACTCTTCTGCTGTCATGGGTGTCTCTGGGATGCAGATGAAACAAATCGTACTTTCTGCAGGTTCAGACAAGAGACTCCTTGGTTTTGATGTTCAAGTAGGAAGCACACTCTTCAAGCATCAACTAGAGAGTAAATGTATGAGCGTGTTGCCTAATCCATGTGACTTTAACCTGTTCATGGTCCAGACAGGGAGTCCAGAAAATCAACTTAGATTATTTGACATTAGATTGGAACAGAAAGAAGTCCACAGTTTTGGGTGGAAGCAAGAAAACAGTGAATCCCAATCAGCTTTGATAAAGCAGTCATGGTCACCAAATGGATTACACTTAACGTCTGGTTCATCAGATCCTGTAATTCATGTTTTTGACATCAGGTATAATTCTCACATGCCATCTCAATCACTTAAAGCTCATCAGAAGCGCGTCTTCAAAGCTGTTTGGCTCCGTTCTCTTCCTTTTCTTGTTTCCATTTCATCTGATTTGAACATTGGACTGCACAAAATGGTCTAG

Protein sequence

MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLESKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSWSPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNIGLHKMV

Homology

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy Swiss-Prot
Match: Q55AR8 (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX=44689 GN=snrnp40 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 32/106 (30.19%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 80  TGSPENQLRLFDIR---LEQKEVHSFGWKQENSESQSALIKQSWSPNGLHLTSGSSDPVI 139
           + S +N  +++DIR      + + +F   Q N E    LIK SWS +G  +  GSSD  +
Sbjct: 249 SNSMDNSCKIWDIRPYAPPNRNIKTFNGAQNNFEKN--LIKSSWSIDGRRIGCGSSDRQV 308

Query: 140 HVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNIGL 183
           +++D   N+      L  H   V +  +  + P + S SSD  I L
Sbjct: 309 YIWDT--NTKQLQYCLPGHSGTVNEVTFHPNEPIIASCSSDKTIYL 350

[Close]

BLAST of Cucsat.G11063.T13 vs. NCBI nr
Match: XP_011648713.1 (uncharacterized protein LOC101206361 [Cucumis sativus] >KGN63432.1 hypothetical protein Csa_013827 [Cucumis sativus])

HSP 1 Score: 379 bits (973), Expect = 8.70e-128
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE
Sbjct: 335 MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 394

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW
Sbjct: 395 SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 454

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 455 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 514

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 515 GLHKMV 520

[Close]

BLAST of Cucsat.G11063.T13 vs. NCBI nr
Match: XP_016903192.1 (PREDICTED: uncharacterized protein LOC103502273 isoform X2 [Cucumis melo])

HSP 1 Score: 364 bits (935), Expect = 1.67e-123
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 228 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 287

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 288 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 347

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 348 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 407

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 408 GLHKMV 413

[Close]

BLAST of Cucsat.G11063.T13 vs. NCBI nr
Match: XP_008464363.1 (PREDICTED: uncharacterized protein LOC103502273 isoform X1 [Cucumis melo] >KAA0057726.1 nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 364 bits (935), Expect = 5.04e-122
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 336 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 395

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 396 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 455

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 456 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 515

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 516 GLHKMV 521

[Close]

BLAST of Cucsat.G11063.T13 vs. NCBI nr
Match: ADN33856.1 (nucleotide binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 364 bits (935), Expect = 1.17e-121
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 364 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 423

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 424 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 483

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 484 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 543

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 544 GLHKMV 549

[Close]

BLAST of Cucsat.G11063.T13 vs. NCBI nr
Match: TYJ98411.1 (nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 364 bits (935), Expect = 3.04e-120
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 478 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 537

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 538 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 597

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 598 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 657

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 658 GLHKMV 663

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL
Match: A0A0A0LRK6 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G000560 PE=4 SV=1)

HSP 1 Score: 379 bits (973), Expect = 4.21e-128
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE
Sbjct: 335 MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 394

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW
Sbjct: 395 SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 454

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 455 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 514

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 515 GLHKMV 520

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL
Match: A0A1S4E4P3 (uncharacterized protein LOC103502273 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502273 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 8.07e-124
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 228 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 287

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 288 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 347

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 348 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 407

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 408 GLHKMV 413

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL
Match: A0A5A7UU99 (Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00070 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 2.44e-122
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 336 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 395

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 396 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 455

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 456 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 515

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 516 GLHKMV 521

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL
Match: A0A1S3CLR0 (uncharacterized protein LOC103502273 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502273 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 2.44e-122
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 336 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 395

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 396 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 455

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 456 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 515

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 516 GLHKMV 521

[Close]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL
Match: E5GBL5 (Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 364 bits (935), Expect = 5.67e-122
Identity = 178/186 (95.70%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MRDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGSDKRLLGFDVQVGSTLFKHQLE 60
           M+DKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAG+DKR LGFDVQVGS LFKHQLE
Sbjct: 364 MKDKYNTWKPELLHRNLHSSAVMGVSGMQMKQIVLSAGADKRFLGFDVQVGSILFKHQLE 423

Query: 61  SKCMSVLPNPCDFNLFMVQTGSPENQLRLFDIRLEQKEVHSFGWKQENSESQSALIKQSW 120
           SKCMSVLPNPCDFNLF VQTGSP NQLRLFDIRLEQKEVHSFGWKQENS+SQSALIKQSW
Sbjct: 424 SKCMSVLPNPCDFNLFAVQTGSPGNQLRLFDIRLEQKEVHSFGWKQENSDSQSALIKQSW 483

Query: 121 SPNGLHLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 180
           SPNGL+LTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI
Sbjct: 484 SPNGLYLTSGSSDPVIHVFDIRYNSHMPSQSLKAHQKRVFKAVWLRSLPFLVSISSDLNI 543

Query: 181 GLHKMV 186
           GLHKMV
Sbjct: 544 GLHKMV 549

The following BLAST results are available for this feature:

BLAST of Cucsat.G11063.T13 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55AR8	7.9e-04	30.19	U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium discoideum OX...	[more]

BLAST of Cucsat.G11063.T13 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648713.1	8.70e-128	100.00	uncharacterized protein LOC101206361 [Cucumis sativus] >KGN63432.1 hypothetical ...	[more]
XP_016903192.1	1.67e-123	95.70	PREDICTED: uncharacterized protein LOC103502273 isoform X2 [Cucumis melo]	[more]
XP_008464363.1	5.04e-122	95.70	PREDICTED: uncharacterized protein LOC103502273 isoform X1 [Cucumis melo] >KAA00...	[more]
ADN33856.1	1.17e-121	95.70	nucleotide binding protein [Cucumis melo subsp. melo]	[more]
TYJ98411.1	3.04e-120	95.70	nucleotide binding protein [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G11063.T13 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRK6	4.21e-128	100.00	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S4E4P3	8.07e-124	95.70	uncharacterized protein LOC103502273 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UU99	2.44e-122	95.70	Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CLR0	2.44e-122	95.70	uncharacterized protein LOC103502273 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
E5GBL5	5.67e-122	95.70	Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 9..47 e-value: 38.0 score: 7.0 coord: 95..140 e-value: 43.0 score: 6.7 coord: 145..184 e-value: 3.0 score: 14.0
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..185 e-value: 8.3E-17 score: 63.0
None	No IPR available	PANTHER	PTHR47232	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN	coord: 3..185
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 5..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G11063	Cucsat.G11063	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11063.T13.E1	Cucsat.G11063.T13.E1	exon
Cucsat.G11063.T13.E2	Cucsat.G11063.T13.E2	exon
Cucsat.G11063.T13.E3	Cucsat.G11063.T13.E3	exon
Cucsat.G11063.T13.E4	Cucsat.G11063.T13.E4	exon
Cucsat.G11063.T13.E5	Cucsat.G11063.T13.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11063.T13.C1	Cucsat.G11063.T13.C1	CDS
Cucsat.G11063.T13.C2	Cucsat.G11063.T13.C2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G11063.T13	Cucsat.G11063.T13-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding