Cucsat.G10863.T3 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G10863.T3
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRING-type domain-containing protein
Locationctg1681: 1093828 .. 1096824 (-)
RNA-Seq ExpressionCucsat.G10863.T3
SyntenyCucsat.G10863.T3
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGAGTTGAGTGCGACGAGGTTCCTCCGATCGCCTATATAAGTGGCCAAAAGGACAGTGAATTGGTCGAATTAAGATGAACTACTGATCATCAATCTTCTTCAATCTTTACCATCTCTACAATTCCACTCTTTTTCTCCAATTTTTTTCCCTTTTCGATCCTACTCTCTCTTCTATTTTCTCTCTTTCTACAGTACTAAAAGCAATTGAAGTAAGTTTTCGTTAATCCCTTTTCCTGTTCATTTCCTTTCTCAAAGAAGTGTTCGCTTTCCTCTAATGGGTTTTGTTTAGTTTCTGAATTTGGTAAAGGAAACGACTCTTTGAGCATTTCAGTTTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAACTTACTTTGACCACCGGGGGATTATTGTTCTTTATCATGTTTGAGGATGGAGGAGGGTTTTCCATTTTCACTGAAAATTGTGTGGTTTTAATCCCTCAAGAGTGTTTTGTGGAATGTTATGAGGATTTTTTGTTCTTGGGTTTTTAGTCTCTTGAAATTTCTCTTTGTGCCTGGTGGAAGATTTTGTAATTGGATCTTTAACCATAGGGTTTGCTTTTACATAAATCTATTCTTGAATGGTAGGTGGATCATGATTCATGTGATAAATTGTCATTTCATATACTTTAATGGAACTAAATGAACTACCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAAATTTCATTAATTAGTTGCTTAGTTCATTTTCTTTCCTGACGATGTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAAAAAAAAAAAGAGAGAAAAAGCAAGAGGTTCTTAGTTGTTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAAGCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAGTTTTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTTCTTTAATCACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTATAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTGAGTGTTCGGTGCTACAAATCTAGTTAGGGGAAAACTCATGTACAGCACTAGAGACCAAAGTTTGATGTATGTCCTAGAGACCAAAGTTTTGTCCCTGTAAATACATGTTTATGAAGTTCTACGCTTCTAGTTTCTGGCTTGTGCCTTTAGCTTTTAGGTTTTGAGTTAATGCACTATTATTTCACTTTCTTTGTATATGGAATTCTCTGAGTATGCTAAAAGTTTTTCAGCTTCTGTTTGTTTGATATTAAGGTTGACACTTGACAGCATGGGAATTAATTTTCTGAAATTATTGTTTTAATTGATGAGTTGGGGATTGCACAAATCTTGGTGACAACTTATATGCTATATCTTGTAAGTTTTTTTAAGTCAGAATATTGTTTATCCATGGAGCAGGATATTTACTAGAGTATTATGATCATATATCGACTGAGTTCTCACGTTAGTCTTCGGAAAAGAGAAGCTTCAAGAAGTACTTCACTTAGTCTTTCTATAGTTGTCCTTTTCCTCCCTCCTCACTACACTTGACTTGACTTATGTTGGTAAGAGTCATCTTCATAATTCTGTTCAAAACAACCCCCGCTGCTTGTATTCCTTTACTTGGCTGCTAATGGACTGTAGCTAGAACAAGGCACGGTTCAAATACCAAGTCTTTCCTATTCGACGTTTCTTGCAGTTTTCAGCCTCCTTAAACCTACTAAAATCAAAGTGAAAGCCTCCTCTACTATATGCTGTGATGCTGAAAACTGTCTTCTCTCCCTCACTTATCTTCGTGAAACTGAACATTACAGTTGCTCCATGGAAATCGAGCAGCTCCATCTATGAGATAGTCAACGTGATTCTGTAGATCATATGCTTGAATACCAAAAGGGTAGAACGAGAATGGACTCCAAAATGAAGATAGAGAGTATAGACTAACGTTTTGAAAGAAATTAAACAGGTTGATAATAGCTTTCGAGAACTTCTCCCTCGAGCTTGAGCTACACATATCTCCCTCTTACGACCTTACCTTACTAGGATAAGTTCTATATGTTGTACAACTATTTCCTTGAATTTTAAAAAACATATATATGCCCATCTTCCTTTGTAACTTTCTGCTACCAACCTGTCTTTATTCTTCCATGTAAAGTAATGTAATTCAAGAGTCAACAGTAAGATGTTGACACGGTCAAATGAATATCTGTTAGAGGAAGCGTTAGGGATAAATAAACTAAAGAAAGAATATTTCAATTTTGTTTTGTTGGTTCTTTTGTTAAATATCTTGCGTTTGTTGATTGTCAGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGATACAACCCAGAAGTTTATAAATGAATATATCGAGAGGTTGTTTAACCTTTAGCTGGCATCACCCAACCTTTTTTCTTAAGATTTCTTATCTTCTTTTCTTGTTCAAAATTTGTTTTAGCTTAGTTTCTTGCTTTTGTCCTCTACAATAATTTGTTTGATGTTTGGAAGAAAAAAAAAAACTCTATTCCTATAGATTGTTGCATGCTG

Coding sequence (CDS)

ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCCATTTCCATGTTCAAATGCATTGTTCGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGCCATCAACTATAGTCCCATCACCAGATTCCTTTGAAAGCTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGACACCGATGTCCAAGGATTAGATTCGATAAAGTACCGAGTTCAGAACGTCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATCACATGCCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGGGAAATCTTGCTTTTGGTACAGCTATCACTATCAGATTTTGGCACTCCAGCAAGTTGGACATCCAACTTGA

Protein sequence

MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWYSYHYQILALQQVGHPT
Homology
[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-37
Identity = 84/150 (56.00%), Postives = 109/150 (72.67%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRL----SWPSTIVPSPDSF 60
           MGLSSLP PSEG+L VILVNTALSIS+ K IVR  L +VGI L    S PS++  S ++ 
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSEN- 60

Query: 61  ESSSELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERR-EHDCSVCLTQFEPESAINHL 120
            S+SE  D       +YLE FR+R P +RF+ +   +++ +++CSVCL++F+ +S IN L
Sbjct: 61  SSTSESFDFRVCQPESYLEEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL 120

Query: 121 SCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
            CGHLFH  CLEKW+DYWNITCPLCRTPL+
Sbjct: 121 KCGHLFHKTCLEKWIDYWNITCPLCRTPLV 149

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.3e-12
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 76  MFRHRCPRIRFDKVPSS-ERREHDCSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYW 135
           + R   P I+F+++ +S E    +C+VCL +FE E  I  L +C H+FH  CL++W+D+ 
Sbjct: 70  LIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHD 129

Query: 136 NITCPLCRTPLMSEE 149
             TCPLCRTP + +E
Sbjct: 130 QKTCPLCRTPFVPDE 144

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0 

Query: 98  DCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEE 149
           DC VCL++ +    +  L C H+FH  CLE WL  +N TCPLCR+ L+S++
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDD 135

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 0 

Query: 92  SERREHDCSVCLTQFEPESAINHLSCGHLFHTDCLEKWLDYWNITCPLCRTPLM 146
           S+    DC VCL++ +    +  L C H+FH  CLE WL + N  CPLCR+PL+
Sbjct: 67  SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-09
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0 

Query: 99  CSVCLTQFEPESAINHL-SCGHLFHTDCLEKWLDYWNITCPLCRT 143
           C +CL +FE E A+ HL  C HLFH +C+E WL   ++TCPLCR+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRS 106

[Close]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match: XP_004144555.3 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypothetical protein Csa_020158 [Cucumis sativus])

HSP 1 Score: 332 bits (850), Expect = 1.09e-114
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPST+VPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match: XP_008462033.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo])

HSP 1 Score: 297 bits (760), Expect = 6.64e-101
Identity = 140/155 (90.32%), Postives = 147/155 (94.84%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS++VPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWY 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF +
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCF 155

[Close]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo])

HSP 1 Score: 294 bits (753), Expect = 6.75e-100
Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS++V S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo])

HSP 1 Score: 294 bits (753), Expect = 8.30e-100
Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS++V S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match: TYK19302.1 (putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa])

HSP 1 Score: 296 bits (759), Expect = 5.17e-99
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS++VPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match: A0A0A0K534 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 1.51e-105
Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KC VRLILHMVGIRLSWPST+VPSPDSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWPSTVVPSPDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDPN GSSWNYLEMFR+R PRIRFDKV SS  REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDPNFGSSWNYLEMFRNRYPRIRFDKVQSSGCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW
Sbjct: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match: A0A1S3CFW8 (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500499 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 3.21e-101
Identity = 140/155 (90.32%), Postives = 147/155 (94.84%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS++VPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFWY 155
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF +
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFCF 155

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 294 bits (753), Expect = 3.27e-100
Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS++V S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1)

HSP 1 Score: 294 bits (753), Expect = 4.02e-100
Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSISM KCIVRLILHMVGIRLSWPS++V S DSFE+SS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISMLKCIVRLILHMVGIRLSWPSSVVSSTDSFENSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGD N GSSWNYLEMFR+R PRIRFDKV SS+ REHDCSVCLTQFEPESAINHLSCGHL
Sbjct: 61  ELGDSNFGSSWNYLEMFRNRYPRIRFDKVKSSDCREHDCSVCLTQFEPESAINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCFW 154
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCFW
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCFW 154

[Close]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match: A0A5D3D707 (Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00210 PE=4 SV=1)

HSP 1 Score: 296 bits (759), Expect = 2.50e-99
Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0 

Query: 1   MGLSSLPAPSEGVLNVILVNTALSISMFKCIVRLILHMVGIRLSWPSTIVPSPDSFESSS 60
           MGLSSLPAPSEGVLNVILVNTALSIS+FKCIVRLILHMVGIRLSWPS++VPS DSFESSS
Sbjct: 1   MGLSSLPAPSEGVLNVILVNTALSISLFKCIVRLILHMVGIRLSWPSSVVPSTDSFESSS 60

Query: 61  ELGDPNCGSSWNYLEMFRHRCPRIRFDKVPSSERREHDCSVCLTQFEPESAINHLSCGHL 120
           ELGDP  GSSWNYL+MFR+R PRIRFDKV SSERREHDCSVCLTQFEPES INHLSCGHL
Sbjct: 61  ELGDPIFGSSWNYLDMFRNRYPRIRFDKVQSSERREHDCSVCLTQFEPESVINHLSCGHL 120

Query: 121 FHTDCLEKWLDYWNITCPLCRTPLMSEEGKSCF 153
           FHT+CLEKWLDYWNITCPLCRTPLMSEE KSCF
Sbjct: 121 FHTECLEKWLDYWNITCPLCRTPLMSEEEKSCF 153

The following BLAST results are available for this feature:
BLAST of Cucsat.G10863.T3 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SI091.7e-3756.00Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X... [more]
Q9XF927.3e-1242.67Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH... [more]
Q9ZT501.2e-0947.06E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ... [more]
Q9ZU512.0e-0944.44E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ... [more]
Q9SZL45.8e-0953.33RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1[more]
BLAST of Cucsat.G10863.T3 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144555.31.09e-11499.35probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypo... [more]
XP_008462033.16.64e-10190.32PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo][more]
XP_016902815.16.75e-10090.26PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo][more]
XP_008462031.18.30e-10090.26PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo][more]
TYK19302.15.17e-9991.50putative E3 ubiquitin-protein ligase XERICO [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G10863.T3 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5341.51e-10594.16RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 P... [more]
A0A1S3CFW83.21e-10190.32probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500... [more]
A0A1S4E4A93.27e-10090.26probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 G... [more]
A0A1S3CGH94.02e-10090.26probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 G... [more]
A0A5D3D7072.50e-9991.50Putative E3 ubiquitin-protein ligase XERICO OS=Cucumis melo var. makuwa OX=11946... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 99..140
e-value: 1.0E-5
score: 35.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 98..141
e-value: 6.6E-11
score: 42.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 99..141
score: 12.961374
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 66..146
e-value: 8.0E-17
score: 62.7
IPR044249Probable E3 ubiquitin-protein ligase XERICO-likePANTHERPTHR47258FAMILY NOT NAMEDcoord: 1..154
NoneNo IPR availablePANTHERPTHR47258:SF1E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATEDcoord: 1..154
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 93..146

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G10863Cucsat.G10863gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G10863.T3.E1Cucsat.G10863.T3.E1exon
Cucsat.G10863.T3.E2Cucsat.G10863.T3.E2exon
Cucsat.G10863.T3.E3Cucsat.G10863.T3.E3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G10863.T3.C2Cucsat.G10863.T3.C2CDS
Cucsat.G10863.T3.C1Cucsat.G10863.T3.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G10863.T3Cucsat.G10863.T3-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane