Cucsat.G10863.T1 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GAAATAAAAAGAAGGGTGGAGACACGCGAGTTGAGTGCGACGAGGTTCCTCCGATCCTCCGGTCGCTTATATAAGTGGCCAAAAGGTTGAATCAAGATGAACTGATCATCAATCTTCTTCAATCTTTACCATCCCTACAATTCCACTATTTTTCTTCGATTCTTTCCCTTTTCGATCCTACTTTCTCTGTTCTCCAGTACTGAAAGCAATTGAAGTAAGTTTTCCTTAATCCCTTTTCCTGTTCATTTCCTTTCCGAAAGAAATGTTCGCTTTCCTCTACTGGGTTTTGTTTAGTTTCTGAGTTTGGTAAAGGAAACGACTCTTTGAGCATTTCAGTCTCATAAATTTCTCTTCTTTTTCACTGGTAGACTCAGCTTACTTTGACCACCAGTGGATTATTGTTCTTTATCATGTTTGAGGATGTAGGAGGATTTTCCATTTTCACTGAAACTTGTGTGGTTTTAGTCCCTCAAAAGTGTTTTGTGGAATGTTATTAGGATTTGTTGTTCTTAGGTTTTTGGACTGTTGAAATTTCTCTATGTTCCTGGTGGAAGATTTTGTAATTGGATCTTTAGCCATAGGGTTTACTTTTCAGAAATCTATTCTTGAATGGTAAGTGGATCATGATTCATGTGATAATTGTCATTTCATATGCTTTAATGGAACTAAATGAATTCCCTTCTGTTTTTCCTCAGTTTCTGCTCCTGATCTCTATTGGTTATGGAGATTTCATTAATTAGTTGCTTAGTTCATTTTCTTTCCTGACGATTTGTTCATGAACTTCAGTTATTTATTACATGGTTCATCCAAAATAAAAAAGAGAAAAAGCAAGAGGTTCTTAGTTGCTTGTTTACTTTTGTTTCAGCTCTGTCGTGAAGAAAGGCTTGCTTGCAAATTACAACCTCTGAATCATTGTGTATTTCTGATCAATCTGCTAATTCTATTCCTGCTGTACCGACTGAGTTTGTGAAGTTTGCTTTAAACACGATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAATGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGACGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAAGTGTTTAGTGTACTACAAATGTAGTCAGAGGAAAACTCATATACAGCATACTCCTAAAGATAATCGTGAGCACATATCCTACCACTGTTTGACATTTGAAGTTTGATGTGTGTGACGGATCTTAAAGATCAAAGTTTTGTCACAGTAAATACATGTTCATAGAAGTTCTATGCTTCTAGTTTGTGCTTTTAGTTTTGAGTTAATTCACTTTAGCTTTGAGTTAATACATTATTACTTCATTTTCTTTATATATGAAATTGCTCGAGTATGGTACAAAGTTTTTCAGTTGCTGTTTGTTTGGTATTGGGGTTGACAGTGGAAATCAATTTTCTGAAATTATTGTTTTAATTCATGTGTTGGTGATGGCTCA ATGGGTCTCTCCAGTCTCCCAGCTCCGTCGGAAGGAGTTCTGAACGTGATTCTTGTAAACACTGCTCTATCTATTTCCATGCTCAAATGCTTTGTACGTTTAATCCTTCACATGGTAGGAATCCGTCTCTCATGGTCATCAACTGTAGTCCCATCAATAGATTCCTTTGGAAGTTCCTCAGAGTTGGGAGATCCCAATTGTGGCTCCTCTTGGAATTACCTTGAGATGTTTCGAAACCGATATCCAAGGATTAGATTTGATAAAGTACAGAGTTCAGGACGCCGTGAACATGACTGCTCGGTCTGTTTAACTCAATTTGAACCTGAATCGGCCATAAATCACTTATTTTGTGGCCATCTTTTTCACACAGATTGCTTGGAGAAGTGGCTGGACTACTGGAACATTACATGTCCTCTTTGCAGAACTCCTCTAATGTCTGAAGAAGAGAAATTTTGCTTTTGGTAA MGLSSLPAPSEGVLNVILVNTALSISMLKCFVRLILHMVGIRLSWSSTVVPSIDSFGSSSELGDPNCGSSWNYLEMFRNRYPRIRFDKVQSSGRREHDCSVCLTQFEPESAINHLFCGHLFHTDCLEKWLDYWNITCPLCRTPLMSEEEKFCFW Homology
BLAST of Cucsat.G10863.T1 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.6e-37 Identity = 84/149 (56.38%), Postives = 106/149 (71.14%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12 Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy Swiss-Prot
Match: Q9LY41 (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 7.3e-11 Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.8e-09 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 5.2e-09 Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. NCBI nr
Match: XP_011658650.1 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KGN43396.1 hypothetical protein Csa_020482 [Cucumis sativus]) HSP 1 Score: 319 bits (817), Expect = 5.86e-110 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. NCBI nr
Match: XP_004144555.3 (probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus] >KAE8645707.1 hypothetical protein Csa_020158 [Cucumis sativus]) HSP 1 Score: 297 bits (760), Expect = 2.90e-101 Identity = 142/154 (92.21%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. NCBI nr
Match: XP_016902815.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X3 [Cucumis melo]) HSP 1 Score: 291 bits (744), Expect = 7.98e-99 Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. NCBI nr
Match: XP_008462031.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO isoform X1 [Cucumis melo]) HSP 1 Score: 291 bits (744), Expect = 9.81e-99 Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. NCBI nr
Match: XP_008462033.1 (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]) HSP 1 Score: 289 bits (740), Expect = 3.73e-98 Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy TrEMBL
Match: A0A0A0K6E0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031570 PE=4 SV=1) HSP 1 Score: 319 bits (817), Expect = 2.84e-110 Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy TrEMBL
Match: A0A0A0K534 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031580 PE=4 SV=1) HSP 1 Score: 304 bits (779), Expect = 1.78e-104 Identity = 146/154 (94.81%), Postives = 146/154 (94.81%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy TrEMBL
Match: A0A1S4E4A9 (probable E3 ubiquitin-protein ligase XERICO isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1) HSP 1 Score: 291 bits (744), Expect = 3.86e-99 Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy TrEMBL
Match: A0A1S3CGH9 (probable E3 ubiquitin-protein ligase XERICO isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500498 PE=4 SV=1) HSP 1 Score: 291 bits (744), Expect = 4.75e-99 Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Cucsat.G10863.T1 vs. ExPASy TrEMBL
Match: A0A1S3CFW8 (probable E3 ubiquitin-protein ligase XERICO OS=Cucumis melo OX=3656 GN=LOC103500499 PE=4 SV=1) HSP 1 Score: 289 bits (740), Expect = 1.81e-98 Identity = 138/153 (90.20%), Postives = 142/153 (92.81%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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