Cucsat.G10671.T7 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G10671.T7
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Coiled-coil domain-containing protein 21, putative isoform 2
Location	ctg1681: 483483 .. 484959 (+)
RNA-Seq Expression	Cucsat.G10671.T7
Synteny	Cucsat.G10671.T7

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTCTGGGCAACAGTATAGGCATGTGCCTTTACCTGAAGAAACAGTAATCGGTGTAGATTTTTGAGGTGGTGATTGTTGAAGCAAGATGTCAATCCTATAATGATTCCGATGCACTTGGGAAAGTAAATAGTATCCATTAAGTTGAAGTTTTTTATTTGCTGCTAAAAAAGTTGATTGCACAAGTAACAGTTTGTATCACTTGATATTGGGAAATGTTGTGTTCCATCCTTCTTTTATGGACGATTGAGGAAGGCTTCTTTGAGGCTGGTGACTTTTTGTGGTTCGAGAGAATTGAGAAATAGGAGAACTTTTAGAGTAGAGATGTTTGGGGGTGGTGGAATACAACTAAGTACAACACACCTCTGTCTCTTTGTCTAAACAGCTTTAAACTGTCTTTTGAAGTTTCCCATCAAAATAACTACATTTTTCTCTTATCTTCGACGGGTTGAGCCATACTTTGTGATTCTTCTTTTGTTTTTGTCTGTTCTTTGGTTTTGTATTGTTTTATTGGTTTGAACTTTTTCTGTTTGTCCTTTTTGTTGTCTTACCATTTGTACTCTTTCATTTCTCTAGAAAGTTCTGTTTCTCATGAAAAAGTTTTAGTTGATGCAGGTGGGAATTGCCTCAATCTGAGAACTCAATATTGGCCTCAACTGCTAATGATTTGCGGACCGATAAACATACCCCTATAAATCCTGAGAAGTTGAAGGCTGCTGCTGAAGGCCTTGCTCATGGTAACCCCTAAAAGAAAATAAATTCCCAATTTCTCCCTCATCCTAATCAATAGACCTTTGGTTTTCATGTAGTTGGAAAGGCGTTTGCTGCAGCTACTGCGCTTGTCTTTGGTGGTGCCACCTTGATCTTTGGATTCACCTTGTCCAAGCTAGATGTCAACAATGTAAACATGGATTTGATGTCTTAACTTTTGGTGGTTTTTGTACATGCACAGACGTTTCCATTTAACTCTGGTCATGGCAACTTTATTTTTTGACAGGCAAGCGAGATTCAAACAAAAGGAAAAGGCATGATTGAACCAAAGATGGAAATGATTAGACAGCAACTTGTTCCCTTCAAAGTCTGGGTATGTTGTATCATTTAAATGATTCTCACTGCATTCACCTGTTACCAGGTTTTCCTTTTGCCAGTTCTTTATCTAACCAAGCTTTTTTTTCGGAGTTTTAGGCTGATGATATGTCAAAAAAATGGCATGTGGAAAGAGATAACGATATCAAAGAGAAGCCTCTCATAAAGGAACTCTCAAAGATTTTGGGTGCCAAGACTCCCAACTAAACTGCACAATTTTTTTGACCTTCTTTTGTTTATCTAGTGTAAATCTGTAAATAATAGAGTATCATTTTCTTATTCCCATCTTTATAGATGGAGTATTTAATGTTACTGTTTGCTAGCTAAGTAATACTAATACGTAAGATCGATGTTGATATATAGAACTTTCCAACTCCCTGTTTCTTTC

Coding sequence (CDS)

ATGATTCCGATGCACTTGGGAAAGTGGGAATTGCCTCAATCTGAGAACTCAATATTGGCCTCAACTGCTAATGATTTGCGGACCGATAAACATACCCCTATAAATCCTGAGAAGTTGAAGGCTGCTGCTGAAGGCCTTGCTCATGTTGGAAAGGCGTTTGCTGCAGCTACTGCGCTTGTCTTTGGTGGTGCCACCTTGATCTTTGGATTCACCTTGTCCAAGCTAGATGTCAACAATGCAAGCGAGATTCAAACAAAAGGAAAAGGCATGATTGAACCAAAGATGGAAATGATTAGACAGCAACTTGTTCCCTTCAAAGTCTGGGCTGATGATATGTCAAAAAAATGGCATGTGGAAAGAGATAACGATATCAAAGAGAAGCCTCTCATAAAGGAACTCTCAAAGATTTTGGGTGCCAAGACTCCCAACTAA

Protein sequence

MIPMHLGKWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLIFGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEKPLIKELSKILGAKTPN

Homology

[Close]

BLAST of Cucsat.G10671.T7 vs. NCBI nr
Match: XP_004144510.1 (uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hypothetical protein Csa_020421 [Cucumis sativus])

HSP 1 Score: 266 bits (681), Expect = 6.21e-88
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI
Sbjct: 120 RWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK
Sbjct: 180 FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSKILGAKTPN
Sbjct: 240 PLIKELSKILGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. NCBI nr
Match: XP_008455465.1 (PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo])

HSP 1 Score: 258 bits (658), Expect = 1.95e-84
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENSILASTANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFA ATALVFGGATLI
Sbjct: 120 RWELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFT+SKLDVNNASEIQTKGK MIEPKMEMIRQQ VPFKVWADD+SKKWHVERDNDIKEK
Sbjct: 180 FGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSKILGAKTPN
Sbjct: 240 PLIKELSKILGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. NCBI nr
Match: XP_038887935.1 (uncharacterized protein LOC120077905 [Benincasa hispida])

HSP 1 Score: 255 bits (651), Expect = 2.26e-83
Identity = 125/136 (91.91%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENS+LASTANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFA ATALVFGGATLI
Sbjct: 120 RWELPQSENSVLASTANDLRTDKHTPVNPEKLKAAAEGLAHVGKAFAVATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FG+T+SKLD+NNASEIQTKGK MIEPKMEMIR+QL+PFKVWADDMSKKWHVERD DIKEK
Sbjct: 180 FGYTISKLDLNNASEIQTKGKSMIEPKMEMIREQLIPFKVWADDMSKKWHVERDEDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSKILGAKTPN
Sbjct: 240 PLIKELSKILGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. NCBI nr
Match: KAA0040223.1 (Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. makuwa] >TYK07125.1 Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (648), Expect = 6.59e-82
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 3   PMHLGK-WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVF 62
           P+ L K WELPQSEN ILASTANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFA ATALVF
Sbjct: 187 PVSLSKEWELPQSENLILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVF 246

Query: 63  GGATLIFGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERD 122
           G ATLIFGFT+SKLDVNNASEIQTKGK MIEPKMEMIRQQ VPFKVWADD+SKKWHVERD
Sbjct: 247 GAATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERD 306

Query: 123 NDIKEKPLIKELSKILGAKTPN 143
           NDIKEKPLIKELSKILGAKTPN
Sbjct: 307 NDIKEKPLIKELSKILGAKTPN 328

[Close]

BLAST of Cucsat.G10671.T7 vs. NCBI nr
Match: XP_022135886.1 (uncharacterized protein LOC111007726 [Momordica charantia])

HSP 1 Score: 241 bits (616), Expect = 4.72e-78
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENS+LASTANDLR DKHT INPEKLKAAAEGLAHVGKAFA ATALVFGGATLI
Sbjct: 120 RWELPQSENSVLASTANDLRADKHTTINPEKLKAAAEGLAHVGKAFAIATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFT+SKLD+NN++EIQTKG+ +IEPKMEMIR+QLVPFK WA+DMSKKWHVERD DIKEK
Sbjct: 180 FGFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQLVPFKTWAEDMSKKWHVERDKDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSK LGAKTPN
Sbjct: 240 PLIKELSKTLGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL
Match: A0A0A0K240 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1)

HSP 1 Score: 266 bits (681), Expect = 3.01e-88
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI
Sbjct: 120 RWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK
Sbjct: 180 FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSKILGAKTPN
Sbjct: 240 PLIKELSKILGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL
Match: A0A1S3C0Z0 (uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 9.45e-85
Identity = 129/136 (94.85%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENSILASTANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFA ATALVFGGATLI
Sbjct: 120 RWELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFT+SKLDVNNASEIQTKGK MIEPKMEMIRQQ VPFKVWADD+SKKWHVERDNDIKEK
Sbjct: 180 FGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSKILGAKTPN
Sbjct: 240 PLIKELSKILGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL
Match: A0A5D3C6S4 (Coiled-coil domain-containing protein 21, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004460 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 3.19e-82
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 3   PMHLGK-WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVF 62
           P+ L K WELPQSEN ILASTANDLRTDKHTP+NPEKLKAAAEGLAHVGKAFA ATALVF
Sbjct: 187 PVSLSKEWELPQSENLILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVF 246

Query: 63  GGATLIFGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERD 122
           G ATLIFGFT+SKLDVNNASEIQTKGK MIEPKMEMIRQQ VPFKVWADD+SKKWHVERD
Sbjct: 247 GAATLIFGFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERD 306

Query: 123 NDIKEKPLIKELSKILGAKTPN 143
           NDIKEKPLIKELSKILGAKTPN
Sbjct: 307 NDIKEKPLIKELSKILGAKTPN 328

[Close]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL
Match: A0A6J1C1Z9 (uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007726 PE=4 SV=1)

HSP 1 Score: 241 bits (616), Expect = 2.29e-78
Identity = 119/136 (87.50%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQSENS+LASTANDLR DKHT INPEKLKAAAEGLAHVGKAFA ATALVFGGATLI
Sbjct: 120 RWELPQSENSVLASTANDLRADKHTTINPEKLKAAAEGLAHVGKAFAIATALVFGGATLI 179

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FGFT+SKLD+NN++EIQTKG+ +IEPKMEMIR+QLVPFK WA+DMSKKWHVERD DIKEK
Sbjct: 180 FGFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQLVPFKTWAEDMSKKWHVERDKDIKEK 239

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSK LGAKTPN
Sbjct: 240 PLIKELSKTLGAKTPN 255

[Close]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL
Match: A0A6J1GLK0 (uncharacterized protein LOC111455089 OS=Cucurbita moschata OX=3662 GN=LOC111455089 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 5.56e-78
Identity = 118/136 (86.76%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 8   KWELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLI 67
           +WELPQS NS+LASTANDLRTDKHTPINPEKLKAAAEGLAH+GKAFA ATALVFGGATLI
Sbjct: 115 RWELPQSGNSVLASTANDLRTDKHTPINPEKLKAAAEGLAHIGKAFAVATALVFGGATLI 174

Query: 68  FGFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEK 127
           FG T+SKLD+NNA+EIQTKGK MIEP+M+MIR+QLVPFKVWAD MSKKWHVER+ DIKEK
Sbjct: 175 FGITMSKLDLNNANEIQTKGKSMIEPRMKMIREQLVPFKVWADGMSKKWHVEREKDIKEK 234

Query: 128 PLIKELSKILGAKTPN 143
           PLIKELSK LGA+TPN
Sbjct: 235 PLIKELSKTLGARTPN 250

The following BLAST results are available for this feature:

BLAST of Cucsat.G10671.T7 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G10671.T7 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144510.1	6.21e-88	99.26	uncharacterized protein LOC101204303 [Cucumis sativus] >KGN43498.1 hypothetical ...	[more]
XP_008455465.1	1.95e-84	94.85	PREDICTED: uncharacterized protein LOC103495622 [Cucumis melo]	[more]
XP_038887935.1	2.26e-83	91.91	uncharacterized protein LOC120077905 [Benincasa hispida]	[more]
KAA0040223.1	6.59e-82	91.55	Coiled-coil domain-containing protein 21, putative isoform 2 [Cucumis melo var. ...	[more]
XP_022135886.1	4.72e-78	87.50	uncharacterized protein LOC111007726 [Momordica charantia]	[more]

BLAST of Cucsat.G10671.T7 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K240	3.01e-88	99.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1	[more]
A0A1S3C0Z0	9.45e-85	94.85	uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=...	[more]
A0A5D3C6S4	3.19e-82	91.55	Coiled-coil domain-containing protein 21, putative isoform 2 OS=Cucumis melo var...	[more]
A0A6J1C1Z9	2.29e-78	87.50	uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1GLK0	5.56e-78	86.76	uncharacterized protein LOC111455089 OS=Cucurbita moschata OX=3662 GN=LOC1114550...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36704	PROTEIN, PUTATIVE-RELATED	coord: 8..142
None	No IPR available	PANTHER	PTHR36704:SF1	PROTEIN, PUTATIVE-RELATED	coord: 8..142

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G10671	Cucsat.G10671	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10671.T7.E1	Cucsat.G10671.T7.E1	exon
Cucsat.G10671.T7.E2	Cucsat.G10671.T7.E2	exon
Cucsat.G10671.T7.E3	Cucsat.G10671.T7.E3	exon
Cucsat.G10671.T7.E4	Cucsat.G10671.T7.E4	exon
Cucsat.G10671.T7.E5	Cucsat.G10671.T7.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10671.T7.C1	Cucsat.G10671.T7.C1	CDS
Cucsat.G10671.T7.C2	Cucsat.G10671.T7.C2	CDS
Cucsat.G10671.T7.C3	Cucsat.G10671.T7.C3	CDS
Cucsat.G10671.T7.C4	Cucsat.G10671.T7.C4	CDS
Cucsat.G10671.T7.C5	Cucsat.G10671.T7.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G10671.T7	Cucsat.G10671.T7-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane