![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Csor.00g298310.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCTTGAGCAACTTCTAAATCTCTTCAATTCCGTCTGGTTTGAGCGTGAAATCTTCAACAACCACCCCTTTTCATCTAACCCCCAAAACCCACAACCAGAAAATCCCTTAAAAAACCCGCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCTTTCGTCCGACAGATTCGAACGAGGTCAATAAGCGAATACTTAGCCTCCAAATTGAGCTTTATGTCCAATTCCAACTCACCCAATTCAGTTCTGTTTTCGCCAAAGCTTCAAACGATGGCCGGAAACGAGTCGCCGGAGAACAGCCAGAGAGGAAATGAACCGCGGCCGGAAACAGAGTTGAGAATGAAATGGTCGGAAAGTAAGAGCTTGTCGGAGCTGGAATTCGAGGAGCTAAAAGGGTTTATGGATATGGGATTTGTTTTCACGGAGGATAAAGATTCTAGCTTGGCGTGGATTGTTCCGGCATTGAACAGAGGCCGGAAGGAAGGAGAAGAAGAGATGGGTGGGGAAATTTTGAGGCCTTATCTTTCGGAAGCTTGGGAAGCTATGGAGTTGAGGAAGCCATTGATGAAGAAATGGAGGTTTCCTGGTAATGAGACTGATATGAAGGATAATCTCAAATGGTGGGCTCATGCTGTGGCTTCTACTGTTAGATGA ATGGACCTTGAGCAACTTCTAAATCTCTTCAATTCCGTCTGGTTTGAGCGTGAAATCTTCAACAACCACCCCTTTTCATCTAACCCCCAAAACCCACAACCAGAAAATCCCTTAAAAAACCCGCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCTTTCGTCCGACAGATTCGAACGAGGTCAATAAGCGAATACTTAGCCTCCAAATTGAGCTTTATGTCCAATTCCAACTCACCCAATTCAGTTCTGTTTTCGCCAAAGCTTCAAACGATGGCCGGAAACGAGTCGCCGGAGAACAGCCAGAGAGGAAATGAACCGCGGCCGGAAACAGAGTTGAGAATGAAATGGTCGGAAAGTAAGAGCTTGTCGGAGCTGGAATTCGAGGAGCTAAAAGGGTTTATGGATATGGGATTTGTTTTCACGGAGGATAAAGATTCTAGCTTGGCGTGGATTGTTCCGGCATTGAACAGAGGCCGGAAGGAAGGAGAAGAAGAGATGGGTGGGGAAATTTTGAGGCCTTATCTTTCGGAAGCTTGGGAAGCTATGGAGTTGAGGAAGCCATTGATGAAGAAATGGAGGTTTCCTGGTAATGAGACTGATATGAAGGATAATCTCAAATGGTGGGCTCATGCTGTGGCTTCTACTGTTAGATGA ATGGACCTTGAGCAACTTCTAAATCTCTTCAATTCCGTCTGGTTTGAGCGTGAAATCTTCAACAACCACCCCTTTTCATCTAACCCCCAAAACCCACAACCAGAAAATCCCTTAAAAAACCCGCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCCTTTCGTCCGACAGATTCGAACGAGGTCAATAAGCGAATACTTAGCCTCCAAATTGAGCTTTATGTCCAATTCCAACTCACCCAATTCAGTTCTGTTTTCGCCAAAGCTTCAAACGATGGCCGGAAACGAGTCGCCGGAGAACAGCCAGAGAGGAAATGAACCGCGGCCGGAAACAGAGTTGAGAATGAAATGGTCGGAAAGTAAGAGCTTGTCGGAGCTGGAATTCGAGGAGCTAAAAGGGTTTATGGATATGGGATTTGTTTTCACGGAGGATAAAGATTCTAGCTTGGCGTGGATTGTTCCGGCATTGAACAGAGGCCGGAAGGAAGGAGAAGAAGAGATGGGTGGGGAAATTTTGAGGCCTTATCTTTCGGAAGCTTGGGAAGCTATGGAGTTGAGGAAGCCATTGATGAAGAAATGGAGGTTTCCTGGTAATGAGACTGATATGAAGGATAATCTCAAATGGTGGGCTCATGCTGTGGCTTCTACTGTTAGATGA MDLEQLLNLFNSVWFEREIFNNHPFSSNPQNPQPENPLKNPPPPEEEEEEEEEPFVRQIRTRSISEYLASKLSFMSNSNSPNSVLFSPKLQTMAGNESPENSQRGNEPRPETELRMKWSESKSLSELEFEELKGFMDMGFVFTEDKDSSLAWIVPALNRGRKEGEEEMGGEILRPYLSEAWEAMELRKPLMKKWRFPGNETDMKDNLKWWAHAVASTVR Homology
BLAST of Csor.00g298310.m01 vs. NCBI nr
Match: KAG6573322.1 (hypothetical protein SDJN03_27209, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 432 bits (1111), Expect = 1.23e-152 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. NCBI nr
Match: KAG7012491.1 (hypothetical protein SDJN02_25243, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 413 bits (1061), Expect = 4.79e-145 Identity = 214/220 (97.27%), Postives = 215/220 (97.73%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. NCBI nr
Match: XP_022954447.1 (uncharacterized protein LOC111456711 [Cucurbita moschata]) HSP 1 Score: 412 bits (1058), Expect = 4.49e-144 Identity = 214/220 (97.27%), Postives = 214/220 (97.27%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. NCBI nr
Match: XP_023542166.1 (uncharacterized protein LOC111802131 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 395 bits (1015), Expect = 1.72e-137 Identity = 207/220 (94.09%), Postives = 209/220 (95.00%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. NCBI nr
Match: XP_038895996.1 (uncharacterized protein LOC120084174 [Benincasa hispida]) HSP 1 Score: 261 bits (666), Expect = 1.40e-84 Identity = 161/248 (64.92%), Postives = 181/248 (72.98%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. ExPASy TrEMBL
Match: A0A6J1GR10 (uncharacterized protein LOC111456711 OS=Cucurbita moschata OX=3662 GN=LOC111456711 PE=4 SV=1) HSP 1 Score: 412 bits (1058), Expect = 2.17e-144 Identity = 214/220 (97.27%), Postives = 214/220 (97.27%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. ExPASy TrEMBL
Match: A0A6J1EH41 (uncharacterized protein LOC111434058 OS=Cucurbita moschata OX=3662 GN=LOC111434058 PE=4 SV=1) HSP 1 Score: 255 bits (651), Expect = 1.09e-82 Identity = 153/242 (63.22%), Postives = 179/242 (73.97%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. ExPASy TrEMBL
Match: A0A6J1KR35 (uncharacterized protein LOC111495710 OS=Cucurbita maxima OX=3661 GN=LOC111495710 PE=4 SV=1) HSP 1 Score: 252 bits (644), Expect = 1.59e-81 Identity = 154/249 (61.85%), Postives = 180/249 (72.29%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. ExPASy TrEMBL
Match: A0A6J1CEZ9 (uncharacterized protein LOC111010901 OS=Momordica charantia OX=3673 GN=LOC111010901 PE=4 SV=1) HSP 1 Score: 240 bits (613), Expect = 7.78e-77 Identity = 150/247 (60.73%), Postives = 173/247 (70.04%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. ExPASy TrEMBL
Match: A0A0A0LV26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470240 PE=4 SV=1) HSP 1 Score: 239 bits (609), Expect = 4.49e-76 Identity = 151/258 (58.53%), Postives = 178/258 (68.99%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. TAIR 10
Match: AT2G42760.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). ) HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20 Identity = 95/265 (35.85%), Postives = 132/265 (49.81%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. TAIR 10
Match: AT2G31560.1 (Protein of unknown function (DUF1685) ) HSP 1 Score: 45.4 bits (106), Expect = 6.6e-05 Identity = 32/107 (29.91%), Postives = 55/107 (51.40%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. TAIR 10
Match: AT2G31560.2 (Protein of unknown function (DUF1685) ) HSP 1 Score: 45.4 bits (106), Expect = 6.6e-05 Identity = 32/107 (29.91%), Postives = 55/107 (51.40%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. TAIR 10
Match: AT1G05870.1 (Protein of unknown function (DUF1685) ) HSP 1 Score: 45.1 bits (105), Expect = 8.7e-05 Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 0
BLAST of Csor.00g298310.m01 vs. TAIR 10
Match: AT1G05870.2 (Protein of unknown function (DUF1685) ) HSP 1 Score: 45.1 bits (105), Expect = 8.7e-05 Identity = 32/108 (29.63%), Postives = 56/108 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following single feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
|