Csor.00g296770.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g296770.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 4180132 .. 4183513 (-)
Sequence length213
RNA-Seq ExpressionCsor.00g296770.m01
SyntenyCsor.00g296770.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATAGCTCTGGCAATGACCAAGACGACGCCGACGATCCTCGGAAGAATGAGAAGATGGGCAGGAGGAATGAGAAGATGGGCAGGAGGAGATGGAAAGAGGAGAAGGAAAGTTCTGGTGAAAGAAAAAGAAAAGAAAAGGGACCAAGGAGAGGAGGAGGAAAGGAGGAAAGAAAAGTTGTCCAAGCAAGTGGCATCTTGGAACTTTGGATTTAGTTATGCTTTTACTATGCATGAAAGTATGATATGAGAAGCATGTCTTAAAAATTTGAGCATGAAATGAGTTAGTTTGATGTATATGAGTATGTATGAAAGTATGATATGAGAAGCATGTCTTAGAAATTTGAGCATGAAATGAGTTGGTTTGATGTATATAAGTATGCATGAAAGTATGATATGAGAAGCATGTCTTAGAAATTTGAGCATGAAATGAGTTGGTTTGATGTATATAAGAGCACATTAAACGTTATGGTGCACGTTTATCCAATAAAGAATTGTTGAGTTATGATATGACTGAAATTGAAAGCATGTCTTTAGTATGATATAAAGTATGTTATGTGAAACTAATTATATATGTTTGAGCAGAGAATGAGTTGAGATGTGACAAATATTGAATGTGGTTATGTATATTTACTAAAGCATGCATGATCTATGATTGAAATTTATGACTAGGTTCTCATGATTAGATCATTATGCTGTCTTTGTCACATATGTTTCGAATATTAATGGTTATATGGGAACGATTAAGGGTTCACCAACTAACCCATAATCGTAAACTTGGCTTGATTGTCAGGGATCCGTATAACTATAGAACTGACCATTTTATTGTTGATGGTACCTTGTAGGACTTATAAGAAGTTTGCCAGTTAATTTTCTATTAGTGCGCCTGTCATGAGTGACAAGGGTCCACATTTGTACATTAGAGTTGGTCTAGATTTATTGTTCATGCATATGAGTTAGCGATTATATAGAGGCGATTAGGGGCTCGCCAACTAACGCCTAATCGTAAACCTGACTCGATTAACAGGGCCTACAGTTAGTTTCCTTTAAGTGAACCTGTCATGAGTGGCGGGGGGTCCACAGTAGTACACTTGAGAGTTGGTCGATTTCTAGAATGCATAAACCTTGAGTATTGAGGTCGCGCCTCGAGGACTTTGAGATATGATGATAATGATGAAAGACTAGCAGAAATGACTAACTTAAGACCTAGAGACATTAAGAATATTCAAAGGGTTGGAGATCTAGATAGGACCAAGAACCGAGAGTAAGTAGAATGAGAAAACCTAGGGGTAACCTAGCCTAAATGAGAGGAACAAATCCCCATAAGAGAATAAGATACTAAACGTTTAAACAAGATCAATAAGACTTAATAATGAAATATAAACCACCAGCAAGCTGCTTACTAATACTCATTCCTCCTAGTTCAACTTTCTTTTTCACGTGGAGATTGATGCATCAATTCACGCAATTTTTTTGAAAAATTTGAGAACACTCGTCCAAAAAAAAAAAAATCGAATTAGCCAAATTTGAGAGGTCGAGTAAGGTTACTAGATTTATTACTTGTAAACTCATAATCATTCTCTTCATTTTAACATTCCATTTGAACTATTCAAAGCCAATTGGAGAATACAATTTTTGATGACTCAAGACCAACATTTTAGCTTATTCAACTTGAGTCTGATACGCTCAAACTCTTTCCTCCGGAATTAATTCATAATTAAAATACTATGGAATACCAAGAATAATTTAGTTATATAAGTAATTCTCAAATATATTAGAAAATCGTTGCATCTAATACCATAGTAAATATGGTATTTAATAGACGTATTTAGAAACTTTAAATCTAAATGGGAAGGTTAAAATTTTATTAATACTCCCAATAAAATTTAAGAAACTAATATTTAAAGTTTTAAATAAATTATTTAGACTAATGATAAATATGTACTCTAATCCAATCATAATTTTCAATTCTTAACTCGTTACAACTTCAATAAGGTTACTTTCTTAAAATATTCGACCCAAATTATCGGAAATTAACCGCCCATTACTTTTAATTTTAAAAATTTTAAATATGAAACCATATGGATGATTAAATTAAACCTTAAGGATTAGTAACTTTGACCTAGGTCAACCGAGTAAGTGGCTTCACTATTGGTTTGGATGGAAGAATTGTTTTATGTATGATGACACATGCCCAGTGGCCCCTGCACATGTCATATGTGTGATATGTTTTGATATGTAACGTTGTGTTATATTACGCTATATGATAAGGTAAATAATATTATAGTATAAATGACATATCATGTTATGTAACGATTAGCTATGATATGCTATAACATATCATGATACGTTTTTGAAATAGGGAAATCTACGAGGCACAACCTCAACCTTCCTATGTCATGTCTTGGAACCTATGTTATGTATGAAATGATGTATAAGAATTATGTAAGCATAATTACCGATTTAATATGTTATGAAAGAATAGAGGTTGTCTTGCATCATTTATTATGTCATGATGGAAAGTATGAGGACCTCATGCATAATTTGTGTTCACATTTATCGAAATACTTCTTCGTCATGTTATGTTAGTGCGGATGCGTACCTTCGATATTTATGTTTATCATGATATCATGCGAGTCTTTTCCTCGATGGTGTCCTGCGACACGTTAGCGCGTTTAGCTCAACAAAGCTAGACCCAAAGAGTATGTATACGAAGCCACCTGGAGGGTCTATGTGCGCGTGGGTGGGCCATGTGTAGGGAAGTACCACACATCCAACTATGTCCGGACTAAAAGAGTTCAAGATCATGCTATGTTGTTTTAAATTATAGGTCTCACCATGTTGCATGTGTTTGCATTTCACAACCCTAATATTAGGTCACTTAATGAATATTTCTTAAAATACTCCAGTCATGTGCTACTCTTACATTTCAGTAAAGGTAATGCACCTGTGTACGGATGATGGAGACAACATGTAAAGACCATGGAACCGGTATTAAGGTAGTTGCATTTTATTTTATTTATTAGTCTTAGGTTAGATTAGGGCAATCTATTGTTTTCTAGTTTTTGGACATATTGTTTATTCTCGTTTCTTATATATTTTTGGATTGATTTATGGATTTTATTTTTAACGTATAAGTCCATGACATCGTTTTTAAAATATTTTAAAGAAATTTTTTCACAATTAACAGTCAGTGTCATGCACAGTAACCGCTCTTTATTTCATTAGAAAAATAGGATCGTTATTGAGAAAAAGTTTCATAATTTTGACTTACTTTTCAATTCTAGGCAACATTGGCAAAAGATGGAGTGGAGTTTTTGCTCGAATGAAAAGAACGAACAAAAGAGACAGTGTCGATGAAGTTGGGAAAAGTTTGTGA

mRNA sequence

ATGGACGATAGCTCTGGCAATGACCAAGACGACGCCGACGATCCTCGGAAGAATGAGAAGATGGGCAGGAGGAATGAGAAGATGGGCAGGAGGAGATGGAAAGAGGAGAAGGAAAGTTCTGGCAACATTGGCAAAAGATGGAGTGGAGTTTTTGCTCGAATGAAAAGAACGAACAAAAGAGACAGTGTCGATGAAGTTGGGAAAAGTTTGTGA

Coding sequence (CDS)

ATGGACGATAGCTCTGGCAATGACCAAGACGACGCCGACGATCCTCGGAAGAATGAGAAGATGGGCAGGAGGAATGAGAAGATGGGCAGGAGGAGATGGAAAGAGGAGAAGGAAAGTTCTGGCAACATTGGCAAAAGATGGAGTGGAGTTTTTGCTCGAATGAAAAGAACGAACAAAAGAGACAGTGTCGATGAAGTTGGGAAAAGTTTGTGA

Protein sequence

MDDSSGNDQDDADDPRKNEKMGRRNEKMGRRRWKEEKESSGNIGKRWSGVFARMKRTNKRDSVDEVGKSL
Homology
[Close]
BLAST of Csor.00g296770.m01 vs. NCBI nr
Match: KAG6573475.1 (hypothetical protein SDJN03_27362, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134 bits (338), Expect = 1.47e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDDSSGNDQDDADDPRKNEKMGRRNEKMGRRRWKEEKESSGNIGKRWSGVFARMKRTNKR 60
          MDDSSGNDQDDADDPRKNEKMGRRNEKMGRRRWKEEKESSGNIGKRWSGVFARMKRTNKR
Sbjct: 1  MDDSSGNDQDDADDPRKNEKMGRRNEKMGRRRWKEEKESSGNIGKRWSGVFARMKRTNKR 60

Query: 61 DSVDEVGKSL 70
          DSVDEVGKSL
Sbjct: 61 DSVDEVGKSL 70

The following BLAST results are available for this feature:
BLAST of Csor.00g296770.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g296770.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6573475.11.47e-39100.00hypothetical protein SDJN03_27362, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g296770.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g296770.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..70

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g296770Csor.00g296770gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.CDS02Csor.00g296770.m01.CDS02CDS
Csor.00g296770.m01.CDS01Csor.00g296770.m01.CDS01CDS


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.terminal01Csor.00g296770.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.stop_codon01Csor.00g296770.m01.stop_codon01stop_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.intron01Csor.00g296770.m01.intron01intron


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.initial01Csor.00g296770.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01.start_codon01Csor.00g296770.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g296770.m01Csor.00g296770.m01-proteinpolypeptide