Csor.00g283170.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g283170.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ribosome-binding factor PSRP1
Location	Csor_Chr16: 97038 .. 102329 (+)
Sequence length	966
RNA-Seq Expression	Csor.00g283170.m01
Synteny	Csor.00g283170.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCACCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTTTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGGTATTTTAGCTTCATCTTCGCTGTTGTTTCTCAGGCAATGCAAGCTTCTGTTCCAATTCTTGTTTTCAGTTTTTTTTCATGTGTTTCCTACTGCGCTGAATTGTTGGAGTCTTAGGTCTGTCCAGGACTTCTTTACTAGTGAGTGTCTCGACTAGTCGTTTTCTAATGATTTGGTTCCTTAATCGGATCGTGCTCCTTATTGGGAGTAAGATCTAGAGAGAAATCTCGTGCTCCTTATTCGTGTTCCTTAATCGACCTGCTAACTCACTACCCTTAATAATTGAAGCGTGATGCCAAAACTATCCACTAGTTACAATCCCAATAATTTCTCCCCCCGAACTGAACATTTCAAACACTAATTAGAAACCTATTCCACTGAGTTTCTCCCTTTACTCAAAGCCTTTTCCATTACTTTTATTTGCTCCAGTTAAAACTGCTAATTTCTATGCGTCATTTCTCATGCGTTTTCCATATCAAAACTCATGTCCCTTCTCCATTTTTTACTCTACACAGCCTCTCTGAAATGATCAGTATCAACAATAGTAAGCATGGCATCAGGAATCCACTGCAATTTTTTTTTTTCTAAAAAGGGTCCTCACCCTATTTCCTAACCTTCATTTTATATCTTCGTTTATTGCCGCTAGGAGATGGTTTTTAGGGTGCATTCATTTTCTTCTATATCAGCATCTAAACCAAATTTTCTTCTCATCAAACACAACCATTTCCCTTCCATGATTATTTCATTTGGGGTAACACGCAATGGCAACTTCGTATTTCCCAATTTCAATTGTTTTCTTCTTCAGATACAACATATCTGCTTGAGGGATTCCTTTGTAAAATTGGATCACGAAATCTATAGGCCCTTGGCTTTTCACTAAACCAAGCCGCACAACTCGAGCTTTATCATCCTGCTTAGTTCTTCAGCATGATTCACACATCCAAAAGCAGTTAAGTACTCAACAGGCCAACTCCACTCCCATTTGGAGTTCTTATTTTAGTGGGTCCTATCTGGAGACATACTGAAAACTTCTTCCAAATCAAAAGAAACAAAAGAAAAAATGTTTTCATCCAAATCAAAAGAAACAAAAGAAAAAATGGGTTCATTGGGAAGAAAGATGGAGTCCGACCTGTAGAGCACATGTAAGGCACATTCGGGTTGATCGGATCTCTATCTCTCCCTAGATATCTAGAGATGGAGAGAGATGTGAAAGTAATAGGCTTATAAAAGGTTTTGGAACTCGAATTCCACTTGACGAGGGTATGGGATTGCTTGACTACATGCAAAAGCTTTTCCTTCGACTGGATTGAATAATGATCTTTATTCCCAAGCTTAAACTTAATGCTTGCGAGGCCAAGGTGAAGAACCGATTAAGCTTAAGCTTGGTTGATTTTGTCAAGTTGAAGAACTGGTTAAGCTTAAGCTTGGTTGATTTTGTCAAGGTGAAAGAACTGATTAAGCTTAGTTGATTTTGTCAGAAGAAAGTAGGTTACACTGGTTCATTGATTAGTAAACCTCTCATGCTGGTAAAGCTTAGCTAAAGTCATACCCGCGAGATCCCATAGTGACTTGGCTTTGAGATCCCATAGTGACTTGGGGTGGTTCTCCGTGGACAATGCCACCTCAAATCATTTTCTTTTTCTCTTGCATCAAGTTGACCCACTCTCCACTATGTAGTGATTATATCAATCATGTACGTGTCATCCCCTCCATTCTGATTGATATATCATGAAAAAATCAAGCCCTTTGCACTACTGCTTTCTCTTGCCCAATGTTAGCCTTGTCAAAAGGTAGGTTTCCGCTCGTTGGTTAATTCATCCTGCAAGTCTATTTCTTTGAATTAGTACTGGTTTCTAGGAAAGTTGTTAATGATATTTTTAGTCAGTTAGCTTAAGTTGCTATACTTGGAGATACCGGCTAGAGTTGGGTAAGTGTAGTTTGTTGCTGATTTTATGGAGTTAACTAGGCTATTTTCAGCATTTGGAATTTGTATTTATAGTGACAAGTGATTGAATAAAACTGTTCACTTCCCAATTCTTCTCTATCTATTAAGAACAGCACCACTGTGAACAGCCTAATTTGCTGGTTCTGGCCAGAAGAAATTTGGGTGTTCTTTAAGCATAGTAATAGTCATTAAGATTATGTTTTTAAAGCATGCGAATCTCCAAATTGGTGGTCATATCATTCTTTTATGCAACTACATCTAGTTATCGTGTTTATGCAACCGTCAGTTGTTGAATGCTATTTGAACTCAAAAATTGGTGAACGCATGTGAAACTCTTTTCAATCAGTACATAGGGGCATATGGCCTTTCCTACTGATCAAAACAAGTTTGACAAGTCCACACTTTAGCTCCTTTCACGCCATTGATTTCCTTTGTCCATTACGAAGTAAACATTGCATAAATTTGGAAGAGACTTAAGCTAAGCTCTAGCTATGTTGAAGTTTCATTAAGCCCTTCAACTCAGCTATCCATGTCTTCAATGCTAAAGCTGCACAATATCTTCACCCGTAGATACTATAGGTTAAGGTATAACTTTGAGCATGAACTTATTCACCGCCATTATTAGACTCTTCCAAAATGGAAATACCTTGCACTTTCTTTCCTAAAATAGGAGACAAAAAATTTAAAATTTGCATTCAAAATCGATATGAAAGTAGTTTAAAGATAATATCTGTAGAGTCAAATCAAAAGGGCTAGCTTCAAATTCATTGAAGAGAAGGTTTAGAAACTAACCATTGACTGTAGGTCATCTTCTCCAACTTGCGTTCGGGCCATTCTGCTTCTTTTTTTATTTGTTTTCTTAAAATTCCCGGTGTTACAATAGCATTACTCTGATCGGCAAATTATTATTCAGCCCTTTACAGCACTACTAACACGTGTAAAAAAAATTACCTTGTTGGTAGAAACTCCAATGAGAATGACCAGATCACCAACTGGCTATCGGAATTTCAATTACCCAATTTATCATATCTCAATGTTTCAAATGTCGTACCTTGAGTGGATTTATTTTTTTTACTGTGCAAAATACTAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTATTGTATTGTTCCTTTATTTTAAATTTATCCATATGAATTGATTCTTTTTCTTTTCTAAAAACATGTGTGTTTGTGTAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGGTTATTCCTTCAACCTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTACCTCGAGTTCATTTTGCTGCATACCTTAATCATCTAAGGTGATATTAGCTTGTACAAACTCATGGGTTCCATATTTCCTATTTTCCACATGTTGAAGCTAATATGAGTGCTAGAGTTACTAAACCACAACTGTTATTGCTTAGTTAGAAATTGTTGTTTTCTCTAGTTTCTTATAAGGAAAAACAATCATCGATTTCGTAGTTGATTTTCTTTTTCCTATCTAGTGGTTGGTCTGAGGAAATGCTAGATGCAGAACTCAGCATCAGTTGAACCAGGTGCAATAAGTTACTCCTTGTGTAGGGGGGAAGAATGGAAAGCAGTGCATCTCAATCTTGATTTCCCCTTCTGCTGTGCTTTTTTCAACTAAATTCTGCCCAAACTCATCGTAGTTATATTTACCGTGAGATCTCACATCAATTGGGATGGAAACGAAGCATTCTTTATAAGATTGTGGAAACCTTTCCCTAGCAAACATGTCCTAGAGGAAACCCAAAAGAAAAAGTCCAAAAAGAACAACTTGGGCTGTTACATTTACATTATAAGGTTAATCAGTCAGGTCTTTTCTTTCACAACATGCTATTTTTGGTGAACATGAAAGCATCGGAAATTGGATCTTGTAGATGTAAGATAGAGGGCCTCCATAGTTGTAGAAGCCTAATATTTGTTATTTCTTGCGGAGCCAGCATTGTGCTCAACTGTTATTGATTAGCTTCTAACTGTCGGACAGTCCTTCATTGTCTACAAGGGACTGTTACATTACAATTTCCTTTCAACTTTATCCTTTTAACCTGCTTAGAGTTACCAAGTTGGTTCATCACAGCAATTGAGACATCCTTCAAAGCTTGCATAGACCCTTTGCTCTTAACGAGTGTTTTATGGCCCCTTCCAACGTACTTGATCGTTATAGCTTTTGATTCATTTGCCTATTTTGTTGACATTCAAGTCTGGCTGGAAGAAGCAGTTGCATGTATCATTTTTAGATGACTAAATCATGCATCATATATTGGAAGCTTGTGAATAATATATCGAAATGGTTAAAATGTTGTTTTTCCTTTTTCATGTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTCATTATTAAAAAAAAAAAACTTGCTTTGTTGGGATTCTGTGCTGTTTATATCGTGGCTTGTTTCATCTTTGGCTCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGGAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

mRNA sequence

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCACCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTTTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGGAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGCCGCTCTCACCTCGTCTATGCAAACGAATCTCCTCTCCACCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACCTTTCCCACCTCCTTCTTTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATCTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAAAGGAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGACACATGAAAGGCTTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCTTTGACAGTTGAGGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGGAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA

Protein sequence

MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVGVAREASLAE

Homology

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BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 327.0 bits (837), Expect = 2.4e-88
Identity = 182/321 (56.70%), Postives = 237/321 (73.83%), Query Frame = 0


Query: 13  LSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSHASAFFNSC---- 72
           L T ++  + + ++S S+S  +S+ PT+                LSS  S F NSC    
Sbjct: 4   LCTSAINMNPNLTNSLSNSINLSSTPTN----------------LSSLRSTFTNSCSLGL 63

Query: 73  NHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAV 132
           N   +++ ++  K +      + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V
Sbjct: 64  NVAVKSVQISRNKPNV-----VCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSV 123

Query: 133 QKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 192
            KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSS
Sbjct: 124 AKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSS 183

Query: 193 IMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEE--EEVSQE------DGGEAI 252
           I+QRKLRKIK+K SDHGRHMKGF+RSK+R+P P+ +  EE  EEV         +  + I
Sbjct: 184 IIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFI 243

Query: 253 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 312
           +E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK D
Sbjct: 244 EEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-D 302

Query: 313 GNAEKIETVTVGVAREASLAE 322
           G  EK+E++ V   ++ S AE
Sbjct: 304 GKTEKLESLPVQTDKQPSFAE 302

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-34
Identity = 88/204 (43.14%), Postives = 129/204 (63.24%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 160
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 161 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK--DSDHGRHMKGFDRSK 220
            EVT++     V+RA+E +E +YASIDLV+  + R+LRK KE+  D  HG        S+
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG----NVKTSE 120

Query: 221 IREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 280
           I E  P+     EE +  +   E   E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 281 EETGEINILYKRKDGGYGLIIPKE 300
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-30
Identity = 78/199 (39.20%), Postives = 122/199 (61.31%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 160
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 161 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPA 220
           T++     V+RA+E +E +YASIDLVS  + R+LRK KEK+     H++        + +
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQ-------EKTS 120

Query: 221 PIVVEDE-EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 280
            ++ ED   + +  +   E   E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 EVLPEDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 281 EINILYKRKDGGYGLIIPK 299
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

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BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-20
Identity = 69/198 (34.85%), Postives = 117/198 (59.09%), Query Frame = 0


Query: 105 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 164
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 165 KKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV 224
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK     +  EP P   
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGR-PEPLP--- 125

Query: 225 EDEEEEVSQEDGGEAID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 284
              E EV+ +  G A+D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ +
Sbjct: 126 GPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ 185

Query: 285 TGEINILYKRKDGGYGLI 296
            G+  ++Y+R+DG YGLI
Sbjct: 186 -GQTGVVYRRRDGHYGLI 188

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot
Match: Q4L4H7 (Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=hpf PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.7e-20
Identity = 67/202 (33.17%), Postives = 116/202 (57.43%), Query Frame = 0


Query: 101 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 160
           ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQ----NSTTKIEV 61

Query: 161 TLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK-DSDHGRHMKGFDRSKIREP 220
           T+   K+  +RAEE  + +YA IDLV+S ++R++RK K + +  H  H          EP
Sbjct: 62  TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTH---------GEP 121

Query: 221 APIVVEDEE------EEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF 280
              V E +E      ++V+ E   ++  EI+R+K F + P+  EEA+ Q++ + HDFY F
Sbjct: 122 EAFVAEVQEAPPENVDDVNAEPTNDSEIEIIRSKQFSLKPMDSEEAVLQMELLGHDFYIF 181

Query: 281 RNEETGEINILYKRKDGGYGLI 296
            + ET   +I+YKRKDG YGLI
Sbjct: 182 TDRETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Csor.00g283170.m01 vs. NCBI nr
Match: KAG6576623.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 604 bits (1557), Expect = 3.30e-217
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH
Sbjct: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           GNAEKIETVTVGVAREASLAE
Sbjct: 301 GNAEKIETVTVGVAREASLAE 321

[Close]

BLAST of Csor.00g283170.m01 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 595 bits (1533), Expect = 1.50e-213
Identity = 317/321 (98.75%), Postives = 318/321 (99.07%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLS HSLTPSSSSSSSSSSSSTVSTFPTSF LPTSTNSAVLKTHALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIR+PAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           GNAEKIETVTV VAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 321

[Close]

BLAST of Csor.00g283170.m01 vs. NCBI nr
Match: XP_022922607.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 587 bits (1513), Expect = 1.45e-210
Identity = 314/321 (97.82%), Postives = 314/321 (97.82%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLS HSLTPSSSSSSSS    TVSTFPTSF LPTSTNSAVLKTHALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSS----TVSTFPTSFSLPTSTNSAVLKTHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           GNAEKIETVTV VAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of Csor.00g283170.m01 vs. NCBI nr
Match: XP_023551717.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 581 bits (1497), Expect = 3.69e-208
Identity = 309/321 (96.26%), Postives = 311/321 (96.88%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLS HSLTPSSSSS+      TVSTFPTSF LPTSTNSAVLK HALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSST------TVSTFPTSFSLPTSTNSAVLKIHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVIAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           GNAEKIETVTV VAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 315

[Close]

BLAST of Csor.00g283170.m01 vs. NCBI nr
Match: XP_022984371.1 (ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 560 bits (1444), Expect = 5.90e-200
Identity = 295/300 (98.33%), Postives = 297/300 (99.00%), Query Frame = 0


Query: 22  SSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRK 81
           SSSSSSSSSSSTVSTFPTSF LPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRK
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 82  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 141
           RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 143

Query: 142 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 201
           LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD
Sbjct: 144 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 203

Query: 202 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 261
           SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE
Sbjct: 204 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 263

Query: 262 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVGVAREASLAE 321
           QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+GNAEKIETVTV VAREASLAE
Sbjct: 264 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 587 bits (1513), Expect = 7.01e-211
Identity = 314/321 (97.82%), Postives = 314/321 (97.82%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MAALTSSMQTNLLS HSLTPSSSSSSSS    TVSTFPTSF LPTSTNSAVLKTHALSSH
Sbjct: 1   MAALTSSMQTNLLSAHSLTPSSSSSSSS----TVSTFPTSFSLPTSTNSAVLKTHALSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI
Sbjct: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           GNAEKIETVTV VAREASLAE
Sbjct: 301 GNAEKIETVTVEVAREASLAE 317

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 560 bits (1444), Expect = 2.85e-200
Identity = 295/300 (98.33%), Postives = 297/300 (99.00%), Query Frame = 0


Query: 22  SSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRK 81
           SSSSSSSSSSSTVSTFPTSF LPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRK
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 82  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 141
           RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 143

Query: 142 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 201
           LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD
Sbjct: 144 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 203

Query: 202 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 261
           SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE
Sbjct: 204 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 263

Query: 262 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVGVAREASLAE 321
           QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+GNAEKIETVTV VAREASLAE
Sbjct: 264 QLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGNAEKIETVTVEVAREASLAE 323

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 497 bits (1280), Expect = 1.69e-175
Identity = 272/323 (84.21%), Postives = 279/323 (86.38%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MA LTSSM TNLLS  S            SSST STFP SF L TSTNS+ LK H LSSH
Sbjct: 1   MATLTSSMHTNLLSAPS------------SSSTFSTFPASFSLLTSTNSSALKIHPLSSH 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
            S FFNSCN CF TI +APR RHA  SF+IRMSWDGPLSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  TSPFFNSCN-CFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEEDAETVY 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEE--VSQEDGGE 240
           ASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDR K+REPAPIVVEDEEEE  VS ED GE
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSLEDSGE 240

Query: 241 AIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300
            IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
Sbjct: 241 VIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK 300

Query: 301 EDGNAEKIETVTVGVAREASLAE 321
           E+G AEK+E VTV  ARE SLAE
Sbjct: 301 ENGRAEKLEPVTVEPAREPSLAE 310

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 5.12e-170
Identity = 267/321 (83.18%), Postives = 279/321 (86.92%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MA LTSSMQ NLLS HSL P   SSS      TVS FP  F L    + + LK HALSS+
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSS------TVSYFPAPFSL----HFSALKVHALSSN 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCKN-FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVF 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE I
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           G AEK+E VTV  ARE SLAE
Sbjct: 301 GTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 5.12e-170
Identity = 267/321 (83.18%), Postives = 279/321 (86.92%), Query Frame = 0


Query: 1   MAALTSSMQTNLLSTHSLTPSSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKTHALSSH 60
           MA LTSSMQ NLLS HSL P   SSS      TVS FP  F L    + + LK HALSS+
Sbjct: 1   MATLTSSMQANLLSDHSLPPPHPSSS------TVSYFPAPFSL----HFSALKVHALSSN 60

Query: 61  ASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHV 120
           ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLIVQGKNLELTEAVKKHV
Sbjct: 61  ASAFFNSCKN-FGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVF 180

Query: 181 ASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAI 240
           ASIDLVSSI+QRKLRKIKEKDSD GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE I
Sbjct: 181 ASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVI 240

Query: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED 300
           DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+
Sbjct: 241 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 300

Query: 301 GNAEKIETVTVGVAREASLAE 321
           G AEK+E VTV  ARE SLAE
Sbjct: 301 GTAEKLEPVTVEAAREPSLAE 310

[Close]

BLAST of Csor.00g283170.m01 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 353.6 bits (906), Expect = 1.7e-97
Identity = 180/248 (72.58%), Postives = 208/248 (83.87%), Query Frame = 0


Query: 80  RKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 139
           R  +   S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 140 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKE 199
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+I+QRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 200 KDSDHGRHMKGFDRSKIREPA-PIVVEDEEEEV-----SQEDGGEAIDEIVRTKYFDMPP 259
           KDSDHGRHMKGF+R K+REP    VVED E+        +E+  + I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 260 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVGV 319
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK+DG AEK+E +    
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 320 AREASLAE 322
             E S AE
Sbjct: 301 LNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Csor.00g283170.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	2.4e-88	56.70	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	1.2e-34	43.14	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	2.2e-30	39.20	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	2.8e-20	34.85	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q4L4H7	4.7e-20	33.17	Ribosome hibernation promotion factor OS=Staphylococcus haemolyticus (strain JCS...	[more]

BLAST of Csor.00g283170.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576623.1	3.30e-217	100.00	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG7014676.1	1.50e-213	98.75	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_022922607.1	1.45e-210	97.82	ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]	[more]
XP_023551717.1	3.69e-208	96.26	ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022984371.1	5.90e-200	98.33	ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Csor.00g283170.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3S3	7.01e-211	97.82	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J523	2.85e-200	98.33	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CJG5	1.69e-175	84.21	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3BQR1	5.12e-170	83.18	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	5.12e-170	83.18	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Csor.00g283170.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	1.7e-97	72.58	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 102..205 e-value: 7.6E-19 score: 66.1
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 104..200 e-value: 1.2E-22 score: 80.5
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 102..200 e-value: 9.42985E-25 score: 93.7337
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 241..294 e-value: 4.1E-26 score: 90.4
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 102..205 e-value: 2.9E-22 score: 80.8
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 102..207
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 253..305 e-value: 1.9E-21 score: 77.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 87..301
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 87..301
IPR034694	Ribosome hibernation promoting factor, long/plastid	HAMAP	MF_00839	HPF	coord: 101..298 score: 20.434986

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g283170	Csor.00g283170	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.CDS05	Csor.00g283170.m01.CDS05	CDS
Csor.00g283170.m01.CDS04	Csor.00g283170.m01.CDS04	CDS
Csor.00g283170.m01.CDS03	Csor.00g283170.m01.CDS03	CDS
Csor.00g283170.m01.CDS02	Csor.00g283170.m01.CDS02	CDS
Csor.00g283170.m01.CDS01	Csor.00g283170.m01.CDS01	CDS

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.initial01	Csor.00g283170.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.start_codon01	Csor.00g283170.m01.start_codon01	start_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.intron04	Csor.00g283170.m01.intron04	intron
Csor.00g283170.m01.intron03	Csor.00g283170.m01.intron03	intron
Csor.00g283170.m01.intron02	Csor.00g283170.m01.intron02	intron
Csor.00g283170.m01.intron01	Csor.00g283170.m01.intron01	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.internal03	Csor.00g283170.m01.internal03	internal
Csor.00g283170.m01.internal02	Csor.00g283170.m01.internal02	internal
Csor.00g283170.m01.internal01	Csor.00g283170.m01.internal01	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.terminal01	Csor.00g283170.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01.stop_codon01	Csor.00g283170.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g283170.m01	Csor.00g283170.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0045900	negative regulation of translational elongation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0043024	ribosomal small subunit binding
molecular_function	GO:0043022	ribosome binding