Csor.00g281560.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g281560.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	BnaA06g11320D protein
Location	Csor_Chr20: 6795937 .. 6796320 (-)
Sequence length	384
RNA-Seq Expression	Csor.00g281560.m01
Synteny	Csor.00g281560.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGATGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGAAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

mRNA sequence

ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGATGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGAAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

Coding sequence (CDS)

ATGATGAAGAAGGGTGGTTTTGTTTTGGTGTTAGTGTTATGGATGGTGGTGGTGGTTGGCGTTGGCAAGGCCGACGATGAAGCACAAAATAATATCGAAGAAACAGTAGGTAGAGTAATATCGGCATCGGCAGCATCCTCTCCTTCGCCTCCCAACTCCTATTGGGAGGAGGTTCGAAAAGTGGTCAATAGAGCCGTCACCTGCCTCTTCCCACCAAAAATAGACTTCCGACAAGGAAATCCGGTGGAAGATGGACAAGTGAACGGGAATGAGAATATGAAGGAATCCATTACCAAGAGCTTCCACACAACCAAACAAATGGTGAAGGATTCTGCCAAGGCTGCCGCTCAAACGCTCCAACCACAACCAGATTCGGAACTCTAG

Protein sequence

MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQPQPDSEL

Homology

[Close]

BLAST of Csor.00g281560.m01 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (640), Expect = 7.69e-84
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

[Close]

BLAST of Csor.00g281560.m01 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 1.28e-82
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKAD+EAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMV+DSAKAAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

[Close]

BLAST of Csor.00g281560.m01 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243 bits (621), Expect = 6.08e-81
Identity = 123/127 (96.85%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKAD+EAQNNIEETVGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120
           VVNRAVTCLFP KIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMV+DSAKA+AQTLQ
Sbjct: 61  VVNRAVTCLFPQKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKASAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

[Close]

BLAST of Csor.00g281560.m01 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (615), Expect = 5.00e-80
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MMKKGGFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRK 60
           MMKKGGFVLVLVLWMVVVVGVGKAD+EAQNNIEE VGRVISASAASSPSPPNSYWEEVRK
Sbjct: 1   MMKKGGFVLVLVLWMVVVVGVGKADEEAQNNIEEIVGRVISASAASSPSPPNSYWEEVRK 60

Query: 61  VVNRAVTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQ 120
           VVNRAVTCLFPPKIDFR GNPVEDGQVNGNENMKESITKSFHTTKQMV+DSA AAAQTLQ
Sbjct: 61  VVNRAVTCLFPPKIDFRPGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSANAAAQTLQ 120

Query: 121 PQPDSEL 127
           PQPDSEL
Sbjct: 121 PQPDSEL 127

[Close]

BLAST of Csor.00g281560.m01 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 206 bits (523), Expect = 3.29e-66
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 15  MVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKAD+EA NNIEETVGRVISASAASSP PPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSP-PPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQPQPDSEL 127
           DFR G PVEDGQVNGNENMKESITKSFHTTKQMV+DSAKAAAQTL+PQPDSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

[Close]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1)

HSP 1 Score: 206 bits (523), Expect = 1.59e-66
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 15  MVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRAVTCLFPPKI 74
           MV+VVGVGKAD+EA NNIEETVGRVISASAASSP PPNSYWEEVRKVVNRAVTCLFPPKI
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSP-PPNSYWEEVRKVVNRAVTCLFPPKI 60

Query: 75  DFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQPQPDSEL 127
           DFR G PVEDGQVNGNENMKESITKSFHTTKQMV+DSAKAAAQTL+PQPDSEL
Sbjct: 61  DFRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPDSEL 112

[Close]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 1.79e-36
Identity = 78/131 (59.54%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 3   KKGGFVL-VLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKV 62
           KK   VL +L+L ++V+VG+ KA++EA NNI          S  S+P+PPNSYWEEVRKV
Sbjct: 6   KKVKLVLRMLLLLLLVLVGIVKANEEAANNIY---------SETSTPNPPNSYWEEVRKV 65

Query: 63  VNRAVTCLFPPKIDFRQGNPVEDGQ----VNGNENMKESITKSFHTTKQMVKDSAKAAAQ 122
           VN+A T LFPPKIDFR G  VED       NGN N+KE++TKSF  TK+MV+DSAKAAAQ
Sbjct: 66  VNKAYTYLFPPKIDFRPGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQ 125

Query: 123 TLQ-PQPDSEL 127
           TLQ P P SEL
Sbjct: 126 TLQKPPPHSEL 127

[Close]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.68e-33
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 3   KKGGFVL-VLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKV 62
           KK   VL +L+L ++++VG+  A+DEA NN+          S  S+P+PPNSYWEEVRKV
Sbjct: 7   KKMKVVLRMLLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRKV 66

Query: 63  VNRAVTCLFPPKIDFRQGNPVED--GQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTL 122
           VN+A + LFPPKIDFR G  VED  G    + N+KE++TKSF  TK+MV+DSAKAAAQTL
Sbjct: 67  VNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTL 126

Query: 123 Q-PQPDSEL 127
           Q P P SEL
Sbjct: 127 QKPPPHSEL 126

[Close]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 2.68e-33
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 3   KKGGFVL-VLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKV 62
           KK   VL +L+L ++++VG+  A+DEA NN+          S  S+P+PPNSYWEEVRKV
Sbjct: 7   KKMKVVLRMLLLLLLILVGIAMANDEAANNVY---------SETSTPNPPNSYWEEVRKV 66

Query: 63  VNRAVTCLFPPKIDFRQGNPVED--GQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTL 122
           VN+A + LFPPKIDFR G  VED  G    + N+KE++TKSF  TK+MV+DSAKAAAQTL
Sbjct: 67  VNKAYSYLFPPKIDFRPGKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTL 126

Query: 123 Q-PQPDSEL 127
           Q P P SEL
Sbjct: 127 QKPPPHSEL 126

[Close]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.18e-15
Identity = 55/143 (38.46%), Postives = 77/143 (53.85%), Query Frame = 0


Query: 3   KKGGFVLVLVLWMVVVVGVG---KADDEAQN-NIEETVGRV------------------- 62
           +   F  VL+L   V++  G   KA D+  N ++EE  G                     
Sbjct: 6   RSANFAFVLLLCTTVIISAGVAAKAGDDHDNLSVEEEAGAARIEGEGRGRSWVEEALVDA 65

Query: 63  ISASAASSPSPPNS---YWEEVRK-VVNRAVTCLFPPKIDFRQG--NPVEDGQVNGNENM 116
           IS    +S +PP +   YW+ +R  V++  +  LFPPKIDFR G  +  EDG  +GNEN+
Sbjct: 66  ISVFTVTSAAPPCATPHYWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGGHGNENV 125

The following BLAST results are available for this feature:

BLAST of Csor.00g281560.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g281560.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571255.1	7.69e-84	100.00	hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571257.1	1.28e-82	98.43	hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571256.1	6.08e-81	96.85	hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571254.1	5.00e-80	96.06	hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022948557.1	3.29e-66	92.92	uncharacterized protein LOC111452199 [Cucurbita moschata]	[more]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9K3	1.59e-66	92.92	uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC1114521...	[more]
A0A0A0L904	1.79e-36	59.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1	[more]
A0A5A7VE77	2.68e-33	56.59	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CDE0	2.68e-33	56.59	uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=...	[more]
A0A6J1D2A4	5.18e-15	38.46	uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Csor.00g281560.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..127
None	No IPR available	PANTHER	PTHR35463	TRANSMEMBRANE PROTEIN	coord: 8..120
None	No IPR available	PANTHER	PTHR35463:SF11	BNAC05G12860D PROTEIN	coord: 8..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g281560	Csor.00g281560	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g281560.m01.CDS01	Csor.00g281560.m01.CDS01	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g281560.m01.stop_codon01	Csor.00g281560.m01.stop_codon01	stop_codon

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g281560.m01.single01	Csor.00g281560.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g281560.m01.start_codon01	Csor.00g281560.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g281560.m01	Csor.00g281560.m01-protein	polypeptide