Csor.00g253160.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g253160.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionEpidermal patterning factor-like protein
LocationCsor_Chr06: 9853569 .. 9853859 (+)
Sequence length291
RNA-Seq ExpressionCsor.00g253160.m01
SyntenyCsor.00g253160.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG

mRNA sequence

ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG

Coding sequence (CDS)

ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG

Protein sequence

MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTPLGPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP
Homology
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           GPGSSPPTCRS+CG+C PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 58  GPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.4e-22
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           GPGS PP CR +CG+C PC+ VHVPIQPG+ +PLEYYPEAWRCKCGNKLFMP
Sbjct: 56  GPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-20
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           G GSSPP C S+CGRC PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 105 GLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.7e-08
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 0

Query: 42  TPLGPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           T +   SSPP C+++C  C PC+P  + + P  + P +YYP+ W C C NK++ P
Sbjct: 462 TCISLSSSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYYPQKWVCSCHNKIYNP 514

BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-08
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 48  SSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           SSPP C+++C  C PC+P  + + P    P +YYP+ W C C NK++ P
Sbjct: 461 SSPPNCKNKCKGCQPCKPKLIIVHPNQ--PEDYYPQRWVCSCHNKIYNP 507

BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: KAG6597420.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220 bits (561), Expect = 8.74e-73
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0

Query: 1  MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTPLGPGSSPPTCRSRCGRC 60
          MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTPLGPGSSPPTCRSRCGRC
Sbjct: 1  MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTPLGPGSSPPTCRSRCGRC 60

Query: 61 WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
          WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP
Sbjct: 61 WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96

BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: KGN56945.1 (hypothetical protein Csa_009821 [Cucumis sativus])

HSP 1 Score: 125 bits (314), Expect = 5.43e-35
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 7   HSNHCNFSLLLTLLLAF---AAVFFHFAAAETQRWWLG---TPLGPGSSPPTCRSRCGRC 66
           H +H +FSLL+  L AF   +A     +++     W+G   + +GPGSSPPTC ++CGRC
Sbjct: 10  HPSHFHFSLLILTLFAFQLASASSSSSSSSSETGGWIGDRKSLVGPGSSPPTCLAKCGRC 69

Query: 67  WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
            PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 70  GPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 105

BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_008438622.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo])

HSP 1 Score: 125 bits (313), Expect = 9.21e-35
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0

Query: 7   HSNHCNFSLLLTLLLAF---------AAVFFHFAAAETQRWWLG---TPLGPGSSPPTCR 66
           H +H +FSLL+  L AF         ++    F+++     W+G   + +GPGSSPPTC 
Sbjct: 10  HPSHFHFSLLILTLFAFQLASASSSSSSSSSSFSSSSETGGWIGDRKSLVGPGSSPPTCL 69

Query: 67  SRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
           ++CGRC PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 70  AKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 111

BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_038905188.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida])

HSP 1 Score: 124 bits (311), Expect = 1.23e-34
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 0

Query: 1  MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLG---TPLGPGSSPPTCRSRC 60
          MG    +  H  FSLLL L L  A      +A+     W+G   + +GPGS PPTCR++C
Sbjct: 1  MGSPSNYYYH--FSLLLILFLLTALFPRLVSASPESGGWIGDRKSLVGPGSCPPTCRAKC 60

Query: 61 GRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
          GRC PC+PVHVPIQPG+SVPLEYYPEAWRCKCGNKLFMP
Sbjct: 61 GRCRPCEPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 97

BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_006414653.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Eutrema salsugineum] >ESQ56106.1 hypothetical protein EUTSA_v10026630mg [Eutrema salsugineum])

HSP 1 Score: 123 bits (308), Expect = 4.72e-34
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 16  LLTLLLAFAAVFFHFAAAETQRWWLGTPLG---------------PGSSPPTCRSRCGRC 75
           LL+ + AFA +    A+A +   WLG   G               PGSSPPTCRS+CG+C
Sbjct: 12  LLSAIAAFALLHLFSASAASAGGWLGQRTGSDLPDRLMSNRRFGGPGSSPPTCRSKCGKC 71

Query: 76  WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
            PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 72  QPCKPVHVPIQPGLSIPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A0A0L4P0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G146310 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 2.63e-35
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 7   HSNHCNFSLLLTLLLAF---AAVFFHFAAAETQRWWLG---TPLGPGSSPPTCRSRCGRC 66
           H +H +FSLL+  L AF   +A     +++     W+G   + +GPGSSPPTC ++CGRC
Sbjct: 10  HPSHFHFSLLILTLFAFQLASASSSSSSSSSETGGWIGDRKSLVGPGSSPPTCLAKCGRC 69

Query: 67  WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
            PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 70  GPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 105

BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A1S3AWH2 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103483678 PE=3 SV=1)

HSP 1 Score: 125 bits (313), Expect = 4.46e-35
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0

Query: 7   HSNHCNFSLLLTLLLAF---------AAVFFHFAAAETQRWWLG---TPLGPGSSPPTCR 66
           H +H +FSLL+  L AF         ++    F+++     W+G   + +GPGSSPPTC 
Sbjct: 10  HPSHFHFSLLILTLFAFQLASASSSSSSSSSSFSSSSETGGWIGDRKSLVGPGSSPPTCL 69

Query: 67  SRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
           ++CGRC PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 70  AKCGRCGPCEPVHVPIQPGLSLPLEYYPEAWRCKCGNKLFMP 111

BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: V4P8Z8 (Epidermal patterning factor-like protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026630mg PE=3 SV=1)

HSP 1 Score: 123 bits (308), Expect = 2.29e-34
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 16  LLTLLLAFAAVFFHFAAAETQRWWLGTPLG---------------PGSSPPTCRSRCGRC 75
           LL+ + AFA +    A+A +   WLG   G               PGSSPPTCRS+CG+C
Sbjct: 12  LLSAIAAFALLHLFSASAASAGGWLGQRTGSDLPDRLMSNRRFGGPGSSPPTCRSKCGKC 71

Query: 76  WPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
            PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 72  QPCKPVHVPIQPGLSIPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A2C9W8D5 (Epidermal patterning factor-like protein OS=Manihot esculenta OX=3983 GN=MANES_03G173400 PE=3 SV=1)

HSP 1 Score: 122 bits (306), Expect = 5.34e-34
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
           GPGSSPPTCRS+CGRC+PCQPVHVPIQPG+SVPLEYYPEAWRCKCGNKLFMP
Sbjct: 61  GPGSSPPTCRSKCGRCFPCQPVHVPIQPGLSVPLEYYPEAWRCKCGNKLFMP 112

BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A2P5FWC0 (Epidermal patterning factor-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_018740 PE=3 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.83e-33
Identity = 60/107 (56.07%), Postives = 67/107 (62.62%), Query Frame = 0

Query: 5   HRHSNHCNFSLLLTL----LLAFAAVFFHFAAAETQRWWLGTP-----------LGPGSS 64
           H H N C F  L T+    LL FA+         TQ    G+             GPGSS
Sbjct: 12  HHHFNQCRFLRLSTITALTLLLFASASASAQLTPTQLRGQGSGKSGVLEPEKRLAGPGSS 71

Query: 65  PPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 96
           PPTCR +CGRC PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 72  PPTCRWKCGRCSPCKPVHVPIQPGLSIPLEYYPEAWRCKCGNKLFMP 118

BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 7.9e-27
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           GPGSSPPTCRS+CG+C PC+PVHVPIQPG+S+PLEYYPEAWRCKCGNKLFMP
Sbjct: 58  GPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           GPGS PP CR +CG+C PC+ VHVPIQPG+ +PLEYYPEAWRCKCGNKLFMP
Sbjct: 56  GPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           G GSSPP C S+CGRC PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 179 GLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 45  GPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP 97
           G GSSPP C S+CGRC PC+PVHVP+ PG  V  EYYPEAWRCKCGNKL+MP
Sbjct: 105 GLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 21/55 (38.18%), Postives = 28/55 (50.91%), Query Frame = 0

Query: 47 GSSPPTCRSRCGRCWPCQPVHVPIQPGM-----SVPLEYYPEAWRCKCGNKLFMP 97
          GS PP C ++C  C PC P    I+        S P  YYP  W C+C +++F P
Sbjct: 47 GSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDSEP--YYPVKWICRCRDRVFEP 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q2V3I31.1e-2588.46EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LUH97.4e-2278.85EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q1PEY63.1e-2075.00EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q7M1E74.7e-0840.00Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1[more]
Q9FY196.1e-0842.86Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6597420.18.74e-73100.00EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs... [more]
KGN56945.15.43e-3559.38hypothetical protein Csa_009821 [Cucumis sativus][more]
XP_008438622.19.21e-3555.88PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo][more]
XP_038905188.11.23e-3460.61EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida][more]
XP_006414653.14.72e-3458.33EPIDERMAL PATTERNING FACTOR-like protein 4 [Eutrema salsugineum] >ESQ56106.1 hyp... [more]
Match NameE-valueIdentityDescription
A0A0A0L4P02.63e-3559.38Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G146... [more]
A0A1S3AWH24.46e-3555.88Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103483678... [more]
V4P8Z82.29e-3458.33Epidermal patterning factor-like protein OS=Eutrema salsugineum OX=72664 GN=EUTS... [more]
A0A2C9W8D55.34e-3494.23Epidermal patterning factor-like protein OS=Manihot esculenta OX=3983 GN=MANES_0... [more]
A0A2P5FWC01.83e-3356.07Epidermal patterning factor-like protein OS=Trema orientale OX=63057 GN=TorRG33x... [more]
Match NameE-valueIdentityDescription
AT4G14723.17.9e-2788.46BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);... [more]
AT3G22820.15.3e-2378.85allergen-related [more]
AT2G30370.12.2e-2175.00allergen-related [more]
AT2G30370.22.2e-2175.00allergen-related [more]
AT1G80133.13.8e-0538.18unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 46..96
e-value: 3.6E-19
score: 68.5
NoneNo IPR availablePANTHERPTHR33109:SF69PUTATIVE, EXPRESSED-RELATEDcoord: 44..96
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 44..96

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g253160Csor.00g253160gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g253160.m01.CDS01Csor.00g253160.m01.CDS01CDS


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g253160.m01.single01Csor.00g253160.m01.single01single


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g253160.m01.start_codon01Csor.00g253160.m01.start_codon01start_codon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g253160.m01.stop_codon01Csor.00g253160.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g253160.m01Csor.00g253160.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010374 stomatal complex development
biological_process GO:0010052 guard cell differentiation
cellular_component GO:0005576 extracellular region