Csor.00g253160.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglestart_codonpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG ATGGGAGGGTCACACCGCCACTCCAATCATTGCAACTTCTCCTTACTTCTAACCCTCCTCCTCGCCTTCGCCGCCGTCTTCTTCCACTTCGCCGCTGCGGAAACCCAGCGGTGGTGGCTTGGGACACCTCTTGGACCGGGTTCGTCGCCGCCAACTTGCCGATCCAGGTGTGGGAGATGCTGGCCGTGTCAACCGGTTCATGTTCCAATTCAACCGGGTATGAGTGTGCCATTGGAGTACTACCCCGAAGCTTGGAGATGCAAATGTGGGAATAAGCTCTTCATGCCTTAG MGGSHRHSNHCNFSLLLTLLLAFAAVFFHFAAAETQRWWLGTPLGPGSSPPTCRSRCGRCWPCQPVHVPIQPGMSVPLEYYPEAWRCKCGNKLFMP Homology
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 7.4e-22 Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 3.1e-20 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.7e-08 Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 6.1e-08 Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: KAG6597420.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 220 bits (561), Expect = 8.74e-73 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: KGN56945.1 (hypothetical protein Csa_009821 [Cucumis sativus]) HSP 1 Score: 125 bits (314), Expect = 5.43e-35 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_008438622.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]) HSP 1 Score: 125 bits (313), Expect = 9.21e-35 Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_038905188.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Benincasa hispida]) HSP 1 Score: 124 bits (311), Expect = 1.23e-34 Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. NCBI nr
Match: XP_006414653.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Eutrema salsugineum] >ESQ56106.1 hypothetical protein EUTSA_v10026630mg [Eutrema salsugineum]) HSP 1 Score: 123 bits (308), Expect = 4.72e-34 Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A0A0L4P0 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G146310 PE=3 SV=1) HSP 1 Score: 125 bits (314), Expect = 2.63e-35 Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A1S3AWH2 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103483678 PE=3 SV=1) HSP 1 Score: 125 bits (313), Expect = 4.46e-35 Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: V4P8Z8 (Epidermal patterning factor-like protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026630mg PE=3 SV=1) HSP 1 Score: 123 bits (308), Expect = 2.29e-34 Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A2C9W8D5 (Epidermal patterning factor-like protein OS=Manihot esculenta OX=3983 GN=MANES_03G173400 PE=3 SV=1) HSP 1 Score: 122 bits (306), Expect = 5.34e-34 Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. ExPASy TrEMBL
Match: A0A2P5FWC0 (Epidermal patterning factor-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_018740 PE=3 SV=1) HSP 1 Score: 121 bits (303), Expect = 1.83e-33 Identity = 60/107 (56.07%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 117.1 bits (292), Expect = 7.9e-27 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23 Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0
BLAST of Csor.00g253160.m01 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05 Identity = 21/55 (38.18%), Postives = 28/55 (50.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following single feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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