Csor.00g247180.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGGTAATTTTCTAAAGGTTGCATATTTGTTTTAGCGAGGACTTGATACCATCTGATGCTTGGGTTTGGTTTCAGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGAGAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGGTAAGTTTCCCTCCAGCGCCTAATTTCGTTATCTGCATTGTCTTGTTCTGGACACTTATATTGTGTTTTGTGGTATTGGCTTGATTTAGTTCCTCTTTTATTGGATGGTGAAGGCTGCTCTAGATTAAGAAAGAAAATGGCCTATGTAAACCCACATTATCCTTTCCATCGTTCTCTCTCAAATTATATAGTAGTATGATCCAGTGCATTGTATGTAGATAGTCTTGCTCGATTGGGATTGCTCAGGGTTTGAATCTTAATGAGTTGAGGCTAGATAATTTAAGATTTGGATTGGCTCTTCTTGGTTGACTTTTGAACATTATTAGTTTGTAGGCCCATTTGATTAATCATCGCTGAGAGATCACATATGGACTCCAATTTAATAACTACCAAGAATGAAGACAGAGAACTTAAAAGTAAGAAAAACTCAACTCCATTACTTGCAATTTGCATAGAACGAAATGATTACTCTTTGCATTTGCGTATTCAGTATGGGGGTCAAGTTTTGTGGCCTCTTTGTAGTCCTTTGGGGCAATTGGATCAAGAGGAATAAGACCTTTTAGGGATCGTGAGAGACCTTGGGAGGAGGTGTGGTCACTCTATTTGGACATCGTTTTCCAAGTATTTTTGTACTTATCTGCTAGGTCTAATTATTATGAACTGGAGATCTTTTTTTTTCTTTGTTTTTGTATAGCTAGGTGGTTGCCTTCTCTTAGTGTGCAGTATTTTTGTGTGTCCTTTTGTATTCTTTCATTTTGTCTCAATAAAAGCTTGTTTCCTCATTAACAAAAATGGTCATCTTTTGTGAAAGAAATAGTACGAATTATATTTACGTCGTCATATTTGAATTAATCGAAGGTAATGGATAGCATAGTGATCCATCTCGCTCCTGAATTGTAATAGTCTTGATGATGTAATTGGTAAATGTATGTGATTGAAAGCATGCCAAGAGTGTAAGATAGATAAAAAGCCTTCATTGTTTCCTGCGCTGTTAAGAGATTGTAACCTCCAAGTCCTCTTCTTCCCAAATTTACCGCACCCCAAATTTTGACAGTATTACAACGTAACTGTGGTAACTTCCCAAATATTGAGCACCTGATAAAGAAATGCTAAGCTCCAACTCAAGAACTAACTGTTAACTTCAAATTACCTGAATATAAAGAACTCTTTCAAGCTTATCCAACTTTAACAAAATTTCTAAGAACAAGCCAACTTCCAAACAATGATACAACTCGAATGCCAGTCCCAAAATGAATCATCAACACTGAACAGTAACTCAAACCATAAATGAACTAACCAACTCGTACTAATGTAAGTTCCCAACTAAAACCAACTATTAAGAAGATAGAATAACTAGCTAATGGTCTCAAAATTTGGTGGTGAGTTCATCATAATGCATACTCAGTAAGTGGCTCACGCATGAGGAGTCATCAAACAACATACAACCTAGAAAACAAACATAATGCTTCTCTCATACAACTATCTCTTTGCACATAAAACAAGTAAAACATTCAACATGCTCAACACTTGCATCAATACATCATGTCATGTGCACTCAATCCTCACGCAAGGTCAACGAGCTCATTTGACTCCACAGAGTCACTCAACACTAATATTTAGCTCTCACAAAGCTATATGAGACTGACTCTTTCGAGTTATGTCAATGGTCTACCACCCTGACCATTTTTACCTGAGGCACAATGGTATTTACCCAACTTTTCTTCATCACACACAAGGTCCTCTGACATCGTACAATCTCACTAAAATGCATTATCCTACACAACCATCATGCCTTTTCAGACAATATCAGCATTTCAGCATGCTCATCACAACATAGTCAACAAACAACAGGCTCAAAAACTATCGAAGGTCACATTTCATTAACTTAAGTCACATATCCACCACAAACACAATATGTTCAACATCTCAAAAACACCACATAACCTATCACAACACGATATTTCAGCATGCTTAAACACTCAAGGAGACATAATAATTCAAAGAGACATGCTTCACATGATGTAGTTAGAAAAGTTGGTAGGCACACACCAAACAACTCCACAAGTGGAAACTACTAACTTAAAGTGCTCCTAATATAATCCAGTAGATTCCTAAGCAACAAGTACAAGGCTTAGTGGTCAGAAATTAGTTTGAAGACCTTAATCGAAATTGAAAGAGTATTTAGGAGAGGCGTCCTTACCCAAAATCACTCTTAAAACTGAGTTCGAACAATTCTGAACTGAACTGAATCCTGAAACAAAATGTATTCGCTGGTGTGGGTTTGTGGCTACGGTGTTGTTGAGGATAAAATTTACTCTCAGAGACTTGAACAATTTGATTAAAATTTCTTTCCCCAAATCGTTGACCTATTGCAGATCCCCGAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGGTAAGATACCATCTTCTATAGTTAACATTCTGTTTCTTTTGGGTCGTGCTATTAGTTTTGAGATGCAACCAGAGTTTATGTGGATTGGTAGCCTCGATGGATCTTTAATTCTTCATGTAACAATTGTTGGGAATTGAAAAAACACAGATGAAAATATCATACGAAAGAGCATTAAGAAAATATAGATAATTAATTTACTGTTTCCAGAGAAATACTTTACTGCAAGTATCTGAGATTTGAGTTCAACTCCCTTTTTACTGCTTTTGAGACATGTCTAGCCCAGCCTGACTGAACTAAGCCTTTTGCTGGCAGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAGAATATACCCTCAGGGGAGAGTCAAGTCCTACTGA ATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGAGAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGATCCCCGAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAGAATATACCCTCAGGGGAGAGTCAAGTCCTACTGA ATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGAGAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGATCCCCGAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAGAATATACCCTCAGGGGAGAGTCAAGTCCTACTGA MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLEKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVKSY Homology
BLAST of Csor.00g247180.m01 vs. ExPASy Swiss-Prot
Match: Q6AZD4 (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.5e-28 Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy Swiss-Prot
Match: Q2KI92 (Mitochondrial inner membrane protease subunit 2 OS=Bos taurus OX=9913 GN=IMMP2L PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28 Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy Swiss-Prot
Match: Q96T52 (Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens OX=9606 GN=IMMP2L PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.2e-28 Identity = 64/151 (42.38%), Postives = 88/151 (58.28%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy Swiss-Prot
Match: Q8BPT6 (Mitochondrial inner membrane protease subunit 2 OS=Mus musculus OX=10090 GN=Immp2l PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 9.4e-28 Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy Swiss-Prot
Match: Q5PQ63 (Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis OX=8355 GN=immp2l PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.7e-24 Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. NCBI nr
Match: XP_023538829.1 (mitochondrial inner membrane protease subunit 2 [Cucurbita pepo subsp. pepo] >XP_023538830.1 mitochondrial inner membrane protease subunit 2 [Cucurbita pepo subsp. pepo] >KAG6596348.1 Mitochondrial inner membrane protease subunit 2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 358 bits (918), Expect = 7.78e-125 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. NCBI nr
Match: XP_022948770.1 (mitochondrial inner membrane protease subunit 2 [Cucurbita moschata] >XP_022948779.1 mitochondrial inner membrane protease subunit 2 [Cucurbita moschata] >XP_022948786.1 mitochondrial inner membrane protease subunit 2 [Cucurbita moschata]) HSP 1 Score: 357 bits (915), Expect = 2.23e-124 Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. NCBI nr
Match: XP_022971541.1 (mitochondrial inner membrane protease subunit 2 [Cucurbita maxima] >XP_022971544.1 mitochondrial inner membrane protease subunit 2 [Cucurbita maxima]) HSP 1 Score: 351 bits (900), Expect = 4.33e-122 Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. NCBI nr
Match: KAG7027898.1 (Vacuolar cation/proton exchanger 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 358 bits (918), Expect = 1.89e-118 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. NCBI nr
Match: XP_022145503.1 (mitochondrial inner membrane protease subunit 2 [Momordica charantia]) HSP 1 Score: 328 bits (842), Expect = 2.93e-113 Identity = 152/169 (89.94%), Postives = 162/169 (95.86%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy TrEMBL
Match: A0A6J1GA60 (Mitochondrial inner membrane protease subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452339 PE=3 SV=1) HSP 1 Score: 357 bits (915), Expect = 1.08e-124 Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy TrEMBL
Match: A0A6J1I8V8 (Mitochondrial inner membrane protease subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111470229 PE=3 SV=1) HSP 1 Score: 351 bits (900), Expect = 2.10e-122 Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy TrEMBL
Match: A0A6J1CW41 (Mitochondrial inner membrane protease subunit 2 OS=Momordica charantia OX=3673 GN=LOC111014939 PE=3 SV=1) HSP 1 Score: 328 bits (842), Expect = 1.42e-113 Identity = 152/169 (89.94%), Postives = 162/169 (95.86%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy TrEMBL
Match: A0A0A0LFB4 (Mitochondrial inner membrane protease subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_3G731770 PE=3 SV=1) HSP 1 Score: 315 bits (806), Expect = 7.38e-108 Identity = 147/165 (89.09%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. ExPASy TrEMBL
Match: A0A1S3B5N7 (Mitochondrial inner membrane protease subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486302 PE=3 SV=1) HSP 1 Score: 315 bits (806), Expect = 7.38e-108 Identity = 147/165 (89.09%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. TAIR 10
Match: AT3G08980.1 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 209.9 bits (533), Expect = 1.6e-54 Identity = 91/160 (56.88%), Postives = 127/160 (79.38%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. TAIR 10
Match: AT1G53530.1 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 92.0 bits (227), Expect = 4.8e-19 Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. TAIR 10
Match: AT1G29960.1 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 88.2 bits (217), Expect = 6.9e-18 Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. TAIR 10
Match: AT1G53530.2 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 83.2 bits (204), Expect = 2.2e-16 Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0
BLAST of Csor.00g247180.m01 vs. TAIR 10
Match: AT1G23465.1 (Peptidase S24/S26A/S26B/S26C family protein ) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15 Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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