Csor.00g230290.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g230290.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCyclin
LocationCsor_Chr17: 3135455 .. 3135859 (+)
Sequence length405
RNA-Seq ExpressionCsor.00g230290.m01
SyntenyCsor.00g230290.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGTAA

mRNA sequence

ATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGTAA

Coding sequence (CDS)

ATGGCCCTTCCAATTTCCCCACGAAGCCTTCGCTCCGATGTGTACTCCTACTCCTACGAGGAGCGCTCGGGTACCCCTTTGGTCATCGGCGTTGTTGCGTCCTTGATCGAGAGGAGCATGGCCAGGAACCATCGGATTGCCAAGAATTGCATGTCCATGCCTAGAGATTCCAGGTCCAGGGCCCTTGTTTTTGAGTGCCGTGAGGCTCCCGACATGTCCATTCAGTGTTATTTGGAGAGGATTTTTCGGTATACTAAAGTTGGTCCTTCTGTTTACGTTGTTGCTTATGTTTATATTGATCGGTTTTGCCAACAAAATCCTGGGTTTCGGATCAATCTTAGGAATGTTCATCGCCTTCTTATCACTACTGTCATGGTCGCTTCTAAATATGTCGAGGATATGTAA

Protein sequence

MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM
Homology
[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match: Q9M205 (Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-45
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRA 61
           +L ISPR LRSD+YSYSY+  S TPLVI V++SLI+R++ RN RI++  +     +  + 
Sbjct: 6   SLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALP-SSGAGGKT 65

Query: 62  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 121
            +F+CRE PDM+IQ YL RIFRYTK GPSVYVVAYVYIDRFCQ NPGFRI+L NVHRLLI
Sbjct: 66  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 125

Query: 122 TTVMVASKYVEDM 135
           TT+M+ASKYVED+
Sbjct: 126 TTIMIASKYVEDL 137

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match: Q9SHD3 (Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.7e-45
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGT-PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 61
           +L ISPR LRSD+YSYSY++ S T PLVI V++SLIER++ARN RI+++          +
Sbjct: 3   SLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGF-----GK 62

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+CRE PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ N GFRI+L NVHRLL
Sbjct: 63  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 122

Query: 122 ITTVMVASKYVEDM 135
           ITT+M+ASKYVEDM
Sbjct: 123 ITTIMIASKYVEDM 131

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match: Q7FAT5 (Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-18
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 0 

Query: 10  LRSDVYSYSYEERS----GTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFE 69
           L SDVY+    +       TP+V+ V+ASL+ER +ARN R      +   ++  RA  F+
Sbjct: 6   LASDVYALPCGDDGTTALSTPVVVSVLASLLERHIARNER--DQAAAADGEAARRARAFD 65

Query: 70  CREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVM 129
                DMS+  +LER  RY  V P VYVVAY Y+DR  ++  G R+   N  RLL T ++
Sbjct: 66  SGTVLDMSLHAFLERFSRYANVSPQVYVVAYAYLDRL-RRGDGVRVVSANAQRLLTTAIL 125

Query: 130 VASKYVED 134
           VASK+VED
Sbjct: 126 VASKFVED 130

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = 0 

Query: 23  SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIF 82
           + TP V+ +++ ++E+ +ARN  +AK      +   +    F    AP +SI  YLERI+
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEA----FHGVRAPSISIAKYLERIY 81

Query: 83  RYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM 135
           +YTK  P+ +VV YVYIDR   ++PG  +   NVHRLL+T VM+A+K ++D+
Sbjct: 82  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDV 129

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.5e-17
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 28  VIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKV 87
           +I  ++SL+ER +A ++ + +   +  +    R  VF     P ++IQ YLERIF+Y   
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVATQSQ----RVSVFHGLSRPTITIQSYLERIFKYANC 72

Query: 88  GPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM 135
            PS +VVAYVY+DRF  + P   IN  NVHRLLIT+VMVA+K+++D+
Sbjct: 73  SPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDL 114

[Close]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match: KAG6575227.1 (Cyclin-U2-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575232.1 Cyclin-U2-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269 bits (687), Expect = 8.78e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL
Sbjct: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120

Query: 121 ITTVMVASKYVEDM 134
           ITTVMVASKYVEDM
Sbjct: 121 ITTVMVASKYVEDM 134

[Close]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match: KAG7013796.1 (Cyclin-U2-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269 bits (687), Expect = 1.68e-89
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0 

Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL
Sbjct: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120

Query: 121 ITTVMVASKYVEDM 134
           ITTVMVASKYVEDM
Sbjct: 121 ITTVMVASKYVEDM 134

[Close]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match: XP_023006659.1 (cyclin-U2-2 [Cucurbita maxima])

HSP 1 Score: 264 bits (675), Expect = 1.13e-87
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEE SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 1   MALPISPRSLRSDVYSYSYEEGSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRI+LRNVHRLL
Sbjct: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRISLRNVHRLL 120

Query: 121 ITTVMVASKYVEDM 134
           ITTVMVASKYVEDM
Sbjct: 121 ITTVMVASKYVEDM 134

[Close]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match: XP_023548344.1 (cyclin-U2-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265 bits (677), Expect = 4.80e-87
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 66  MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 125

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQ YLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL
Sbjct: 126 ALVFECREAPDMSIQSYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 185

Query: 121 ITTVMVASKYVEDM 134
           ITTVMVASKYVEDM
Sbjct: 186 ITTVMVASKYVEDM 199

[Close]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match: XP_031269736.1 (cyclin-U2-2-like [Pistacia vera])

HSP 1 Score: 205 bits (521), Expect = 3.20e-64
Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCM-SMPRDSRSR 61
           AL ISPR LRSDVYSYSY+  S TPLVI V+ASLIERSMARN RIAKNC  ++ +D+R+R
Sbjct: 5   ALMISPRKLRSDVYSYSYQNDSNTPLVISVLASLIERSMARNERIAKNCTWALSKDNRTR 64

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYT+ GPSVY+VAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 65  --VFDCHEIPDMTIQSYLERIFRYTRAGPSVYLVAYVYIDRFCQANPGFRINARNVHRLL 124

Query: 122 ITTVMVASKYVEDM 134
           ITT+MVASKYVEDM
Sbjct: 125 ITTIMVASKYVEDM 136

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match: A0A6J1L2S6 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1)

HSP 1 Score: 264 bits (675), Expect = 5.48e-88
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0 

Query: 1   MALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60
           MALPISPRSLRSDVYSYSYEE SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR
Sbjct: 1   MALPISPRSLRSDVYSYSYEEGSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 60

Query: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 120
           ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRI+LRNVHRLL
Sbjct: 61  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRISLRNVHRLL 120

Query: 121 ITTVMVASKYVEDM 134
           ITTVMVASKYVEDM
Sbjct: 121 ITTVMVASKYVEDM 134

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match: A0A1R3HGQ3 (Cyclin OS=Corchorus capsularis OX=210143 GN=CCACVL1_19460 PE=3 SV=1)

HSP 1 Score: 201 bits (512), Expect = 3.96e-63
Identity = 101/131 (77.10%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 5   ISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNC-MSMPRDSRSRALV 64
           ISPR LRSD+YSYSY+  + TPLVI V+ASLIER+MARN RI KNC  ++ +DSR+R  V
Sbjct: 11  ISPRKLRSDLYSYSYQNDANTPLVISVLASLIERTMARNERIVKNCNWALTKDSRNR--V 70

Query: 65  FECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITT 124
           F+C E PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLLITT
Sbjct: 71  FDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLLITT 130

Query: 125 VMVASKYVEDM 134
           +MVASKYVEDM
Sbjct: 131 IMVASKYVEDM 139

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match: A0A6J1A0Y6 (Cyclin OS=Herrania umbratica OX=108875 GN=LOC110414053 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 5.28e-63
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCM-SMPRDSRSR 61
           +L ISPR LRSD+Y YSY+  + TPLVI V+ASLIER+M RN RIAKNC  S+ +D RSR
Sbjct: 6   SLTISPRKLRSDLYCYSYQNDANTPLVISVLASLIERTMTRNERIAKNCKWSLTKDYRSR 65

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 66  --VFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLL 125

Query: 122 ITTVMVASKYVEDM 134
           ITT+MVASKYVEDM
Sbjct: 126 ITTIMVASKYVEDM 137

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match: A0A061DUC4 (Cyclin OS=Theobroma cacao OX=3641 GN=TCM_005606 PE=3 SV=1)

HSP 1 Score: 201 bits (511), Expect = 5.28e-63
Identity = 102/134 (76.12%), Postives = 113/134 (84.33%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCM-SMPRDSRSR 61
           +L ISPR LRSD+Y YSY+  + TPLVI V+ASLIER+M RN RIAKNC  S+ +D RSR
Sbjct: 6   SLTISPRKLRSDLYCYSYQNDANTPLVISVLASLIERTMTRNERIAKNCKWSLTKDYRSR 65

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 66  --VFDCHETPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLL 125

Query: 122 ITTVMVASKYVEDM 134
           ITT+MVASKYVEDM
Sbjct: 126 ITTIMVASKYVEDM 137

[Close]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match: A0A2C9VTE5 (Cyclin OS=Manihot esculenta OX=3983 GN=MANES_05G049800 PE=3 SV=1)

HSP 1 Score: 201 bits (512), Expect = 7.16e-63
Identity = 102/134 (76.12%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCM-SMPRDSRSR 61
           +L ISPR LRSD+YSYSY+  S TPLVI V+ASLIER+MARN RIAKNC  ++ +D R+R
Sbjct: 26  SLAISPRKLRSDLYSYSYQNDSNTPLVISVLASLIERTMARNERIAKNCSWALSKDIRTR 85

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+C E PDM+IQ YLERIFRYT+ GPSVYVVAYVYIDRFCQ NPGFRIN RNVHRLL
Sbjct: 86  --VFDCYETPDMTIQSYLERIFRYTRAGPSVYVVAYVYIDRFCQANPGFRINARNVHRLL 145

Query: 122 ITTVMVASKYVEDM 134
           ITT+MVASKYVEDM
Sbjct: 146 ITTIMVASKYVEDM 157

[Close]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match: AT3G60550.1 (cyclin p3;2 )

HSP 1 Score: 183.0 bits (463), Expect = 1.6e-46
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRA 61
           +L ISPR LRSD+YSYSY+  S TPLVI V++SLI+R++ RN RI++  +     +  + 
Sbjct: 6   SLTISPRKLRSDLYSYSYQNNSKTPLVISVLSSLIDRTLTRNERISRRALP-SSGAGGKT 65

Query: 62  LVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLI 121
            +F+CRE PDM+IQ YL RIFRYTK GPSVYVVAYVYIDRFCQ NPGFRI+L NVHRLLI
Sbjct: 66  QIFDCREIPDMTIQSYLGRIFRYTKAGPSVYVVAYVYIDRFCQTNPGFRISLTNVHRLLI 125

Query: 122 TTVMVASKYVEDM 135
           TT+M+ASKYVED+
Sbjct: 126 TTIMIASKYVEDL 137

[Close]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match: AT2G45080.1 (cyclin p3;1 )

HSP 1 Score: 181.4 bits (459), Expect = 4.7e-46
Identity = 92/134 (68.66%), Postives = 109/134 (81.34%), Query Frame = 0 

Query: 2   ALPISPRSLRSDVYSYSYEERSGT-PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSR 61
           +L ISPR LRSD+YSYSY++ S T PLVI V++SLIER++ARN RI+++          +
Sbjct: 3   SLAISPRKLRSDLYSYSYQDDSNTVPLVISVLSSLIERTLARNERISRSYGGF-----GK 62

Query: 62  ALVFECREAPDMSIQCYLERIFRYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLL 121
             VF+CRE PDM+IQ YLERIFRYTK GPSVYVVAYVYIDRFCQ N GFRI+L NVHRLL
Sbjct: 63  TRVFDCREIPDMTIQSYLERIFRYTKAGPSVYVVAYVYIDRFCQNNQGFRISLTNVHRLL 122

Query: 122 ITTVMVASKYVEDM 135
           ITT+M+ASKYVEDM
Sbjct: 123 ITTIMIASKYVEDM 131

[Close]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = 0 

Query: 23  SGTPLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIF 82
           + TP V+ +++ ++E+ +ARN  +AK      +   +    F    AP +SI  YLERI+
Sbjct: 22  AATPRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEA----FHGVRAPSISIAKYLERIY 81

Query: 83  RYTKVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM 135
           +YTK  P+ +VV YVYIDR   ++PG  +   NVHRLL+T VM+A+K ++D+
Sbjct: 82  KYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDV 129

[Close]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 28  VIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYTKV 87
           +I  ++SL+ER +A ++ + +   +  +    R  VF     P ++IQ YLERIF+Y   
Sbjct: 13  LIAFLSSLLER-VAESNDLTRRVATQSQ----RVSVFHGLSRPTITIQSYLERIFKYANC 72

Query: 88  GPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM 135
            PS +VVAYVY+DRF  + P   IN  NVHRLLIT+VMVA+K+++D+
Sbjct: 73  SPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDL 114

[Close]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 84.7 bits (208), Expect = 6.1e-17
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 0 

Query: 26  PLVIGVVASLIERSMARNHRIAKNCMSMPRDSRSRALVFECREAPDMSIQCYLERIFRYT 85
           P VI  ++SL++R    N     + +S P     R   F     P +SI+ Y+ERIF+Y 
Sbjct: 21  PNVITAMSSLLQRVSETN-----DDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYA 80

Query: 86  KVGPSVYVVAYVYIDRFCQQNPGFRINLRNVHRLLITTVMVASKYVEDM 135
               S Y+VAY+Y+DRF Q+ P   I+  NVHRL+IT+V+V++K+++D+
Sbjct: 81  DCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDL 124

The following BLAST results are available for this feature:
BLAST of Csor.00g230290.m01 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2052.3e-4566.17Cyclin-U2-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-2 PE=1 SV=1[more]
Q9SHD36.7e-4568.66Cyclin-U2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU2-1 PE=1 SV=1[more]
Q7FAT53.1e-1842.19Cyclin-P2-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP2-1 PE=2 SV=1[more]
Q9LJ451.6e-1740.18Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1[more]
O805134.5e-1743.93Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1[more]
BLAST of Csor.00g230290.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575227.18.78e-91100.00Cyclin-U2-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575232.1 Cycli... [more]
KAG7013796.11.68e-89100.00Cyclin-U2-2 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023006659.11.13e-8798.51cyclin-U2-2 [Cucurbita maxima][more]
XP_023548344.14.80e-8799.25cyclin-U2-1 [Cucurbita pepo subsp. pepo][more]
XP_031269736.13.20e-6477.61cyclin-U2-2-like [Pistacia vera][more]
BLAST of Csor.00g230290.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L2S65.48e-8898.51Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499317 PE=3 SV=1[more]
A0A1R3HGQ33.96e-6377.10Cyclin OS=Corchorus capsularis OX=210143 GN=CCACVL1_19460 PE=3 SV=1[more]
A0A6J1A0Y65.28e-6376.12Cyclin OS=Herrania umbratica OX=108875 GN=LOC110414053 PE=3 SV=1[more]
A0A061DUC45.28e-6376.12Cyclin OS=Theobroma cacao OX=3641 GN=TCM_005606 PE=3 SV=1[more]
A0A2C9VTE57.16e-6376.12Cyclin OS=Manihot esculenta OX=3983 GN=MANES_05G049800 PE=3 SV=1[more]
BLAST of Csor.00g230290.m01 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60550.11.6e-4666.17cyclin p3;2 [more]
AT2G45080.14.7e-4668.66cyclin p3;1 [more]
AT3G21870.11.1e-1840.18cyclin p2;1 [more]
AT2G44740.13.2e-1843.93cyclin p4;1 [more]
AT5G07450.16.1e-1739.45cyclin p4;3 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 56..134
e-value: 5.3E-16
score: 59.4
IPR012389Cyclin P/UPIRSFPIRSF027110PREGcoord: 4..134
e-value: 1.6E-37
score: 127.2
NoneNo IPR availableGENE3D1.10.472.10coord: 16..134
e-value: 3.0E-29
score: 104.0
NoneNo IPR availablePANTHERPTHR15615:SF15CYCLIN-U2-1coord: 4..134
NoneNo IPR availablePANTHERPTHR15615UNCHARACTERIZEDcoord: 4..134
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 77..133

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g230290Csor.00g230290gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g230290.m01.CDS01Csor.00g230290.m01.CDS01CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g230290.m01.start_codon01Csor.00g230290.m01.start_codon01start_codon


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g230290.m01.single01Csor.00g230290.m01.single01single


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g230290.m01.stop_codon01Csor.00g230290.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g230290.m01Csor.00g230290.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function GO:0019901 protein kinase binding