Csor.00g210970.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g210970.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 5761495 .. 5762758 (-)
Sequence length477
RNA-Seq ExpressionCsor.00g210970.m01
SyntenyCsor.00g210970.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAGTGTGTTCGAACTAGGGACTGATCTGCACTCCCAGTGCGCCAACACAGCCGACGAGCATGAACCCAGTCTCTGCAAAATCTTGGTCCGCCGCCGAACCATGGCACCTCAAAAACCATGCAGATCAAAAAGTACAGACTCGCTGAGAGATATGACGACTTACTTGAAAGATGTAACCGTCAAGGTTCTTCTAGTCAGTGGTGGAGAATGTAGAGGACCGGGCACTCGAGCCATTTATGCTCCGAGCACAAAGGCTATGGAGTTGAAGGGTCGACAGCGGTTTGTTTGTAAACTTCGAATAACAATCCCTGTCATGTTATATTTTTAGCTGAACCACAATGATGATAAAGAGAAGTCGCTTTCAGCTAAAGCAGAGGCCAAACGGTTTCGGCTTTCAGCGCGTAAAGAAACCGTTCTTCCACGTAAATGAGTATTGAACAATGCTGATGAGATAAAAGGGAAACCAGAAAGAACAATGAAAAAGAAACTATTTTATTTGTATGCTTGATGGACAATGTAGTTATCATCCATTGATGGATTGATCTAATTCAAAAGGAGGATTTCAACAGCCTGCAGACGAACCATATGGTTTTCTAATTTATTGGCAAATGAACTCGGGGACGGATGATTTCATCGGAGACGATGGCGAGGAGGGGAAACCCCCCCTGTCTCGTTTTTCACCCCATTTTTATTGTTTTTTAACCCATAGCAAAGCCAAAGGTAACTTGTGCCACCAATGCCATTGACATCCGCTCCAACCTCATGAGGATGGAGGGAGCCATTTCAAAATGTTGGGAGTGTTAGCAGCAAATCTACCGCATAATTTACCATTGCTGGAGATGATATGCCTCCCCTCAAAACACAGTAAAGGTTTAAGAAAAGCAGAACACACAATACAAGAGAGAGCTGGAGTCCGTTGCAACACGACTTGGGGACTAAACCATAAAAATAAACGACTTAGGAGTCAATTGAAACGAGGAGCCTAAATAAATAAAGTCTGTAATAGACAAAGAATACAAGTTCTTTTAAACAACATGATTGAACTATTTTTCATGATTCTGAGCTACCTTAAGCGGGATTTGGACTCCTGTTTTCAGGACTCCTATCCTCTACCCCAAGATACTGTGAGTGATATGCTTCCCCTGATGAAGTGCTGCTCCATTACCAGAGCCATCGTTCGATTGCTTCGCTCATCAAAGTTATCTTCAACTTCGTCTCCCAGTAATTCCTTGAGTGAACGCTCCATGTCTAGGTTCTAA

mRNA sequence

ATGTGCAGTGTGTTCGAACTAGGGACTGATCTGCACTCCCAGTGCGCCAACACAGCCGACGAGCATGAACCCAGTCTCTGCAAAATCTTGGTCCGCCGCCGAACCATGGCACCTCAAAAACCATGCAGATCAAAAAGTACAGACTCGCTGAGAGATATGACGACTTACTTGAAAGATGTAACCGTCAAGGTTCTTCTAGTCAGTGGTGGAGAATGTAGAGGACCGGGCACTCGAGCCATTTATGCTCCGAGCACAAAGGCTATGGAGTTGAAGGGTCGACAGCGGTTTGTTTGTAAACTTCGAATAACAATCCCTGACTCCTATCCTCTACCCCAAGATACTGTGAGTGATATGCTTCCCCTGATGAAGTGCTGCTCCATTACCAGAGCCATCGTTCGATTGCTTCGCTCATCAAAGTTATCTTCAACTTCGTCTCCCAGTAATTCCTTGAGTGAACGCTCCATGTCTAGGTTCTAA

Coding sequence (CDS)

ATGTGCAGTGTGTTCGAACTAGGGACTGATCTGCACTCCCAGTGCGCCAACACAGCCGACGAGCATGAACCCAGTCTCTGCAAAATCTTGGTCCGCCGCCGAACCATGGCACCTCAAAAACCATGCAGATCAAAAAGTACAGACTCGCTGAGAGATATGACGACTTACTTGAAAGATGTAACCGTCAAGGTTCTTCTAGTCAGTGGTGGAGAATGTAGAGGACCGGGCACTCGAGCCATTTATGCTCCGAGCACAAAGGCTATGGAGTTGAAGGGTCGACAGCGGTTTGTTTGTAAACTTCGAATAACAATCCCTGACTCCTATCCTCTACCCCAAGATACTGTGAGTGATATGCTTCCCCTGATGAAGTGCTGCTCCATTACCAGAGCCATCGTTCGATTGCTTCGCTCATCAAAGTTATCTTCAACTTCGTCTCCCAGTAATTCCTTGAGTGAACGCTCCATGTCTAGGTTCTAA

Protein sequence

MCSVFELGTDLHSQCANTADEHEPSLCKILVRRRTMAPQKPCRSKSTDSLRDMTTYLKDVTVKVLLVSGGECRGPGTRAIYAPSTKAMELKGRQRFVCKLRITIPDSYPLPQDTVSDMLPLMKCCSITRAIVRLLRSSKLSSTSSPSNSLSERSMSRF
Homology
[Close]
BLAST of Csor.00g210970.m01 vs. NCBI nr
Match: KAG6598991.1 (hypothetical protein SDJN03_08769, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312 bits (800), Expect = 3.11e-107
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MCSVFELGTDLHSQCANTADEHEPSLCKILVRRRTMAPQKPCRSKSTDSLRDMTTYLKDV 60
           MCSVFELGTDLHSQCANTADEHEPSLCKILVRRRTMAPQKPCRSKSTDSLRDMTTYLKDV
Sbjct: 1   MCSVFELGTDLHSQCANTADEHEPSLCKILVRRRTMAPQKPCRSKSTDSLRDMTTYLKDV 60

Query: 61  TVKVLLVSGGECRGPGTRAIYAPSTKAMELKGRQRFVCKLRITIPDSYPLPQDTVSDMLP 120
           TVKVLLVSGGECRGPGTRAIYAPSTKAMELKGRQRFVCKLRITIPDSYPLPQDTVSDMLP
Sbjct: 61  TVKVLLVSGGECRGPGTRAIYAPSTKAMELKGRQRFVCKLRITIPDSYPLPQDTVSDMLP 120

Query: 121 LMKCCSITRAIVRLLRSSKLSSTSSPSNSLSERSMSRF 158
           LMKCCSITRAIVRLLRSSKLSSTSSPSNSLSERSMSRF
Sbjct: 121 LMKCCSITRAIVRLLRSSKLSSTSSPSNSLSERSMSRF 158

[Close]
BLAST of Csor.00g210970.m01 vs. NCBI nr
Match: KAG7023616.1 (Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 2.38e-09
Identity = 38/57 (66.67%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 56   YLKDVTVKVLLVSGGECRGPGTRAIYAPSTKAMELKGRQRFVCKLRITIPDSYPLPQ 112
            YLKDVTVKVL  SGG+ RGPGTRA  APST    + G  RFVCKLRITIP  Y L +
Sbjct: 983  YLKDVTVKVLF-SGGDWRGPGTRAT-APSTNGYGVDGSTRFVCKLRITIPVVYILAE 1037

The following BLAST results are available for this feature:
BLAST of Csor.00g210970.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g210970.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598991.13.11e-107100.00hypothetical protein SDJN03_08769, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7023616.12.38e-0966.67Receptor-like protein kinase HSL1, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g210970.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g210970.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g210970Csor.00g210970gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.CDS01Csor.00g210970.m01.CDS01CDS
Csor.00g210970.m01.CDS02Csor.00g210970.m01.CDS02CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.stop_codon01Csor.00g210970.m01.stop_codon01stop_codon


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.terminal01Csor.00g210970.m01.terminal01terminal


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.intron01Csor.00g210970.m01.intron01intron


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.initial01Csor.00g210970.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01.start_codon01Csor.00g210970.m01.start_codon01start_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g210970.m01Csor.00g210970.m01-proteinpolypeptide