Csor.00g186610.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g186610.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Transmembrane 9 superfamily member
Location	Csor_Chr14: 6773190 .. 6774449 (-)
Sequence length	393
RNA-Seq Expression	Csor.00g186610.m01
Synteny	Csor.00g186610.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGATTTTGGAATACGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCAAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGACAGGTTTTAGAGAATCGAGTTGGATTGAATTGAATCGATTCGATTAGCCATGTAAAGTGAAAAGTAAGGGGTGGTAGTTTATGTTATTTGTTAATTTACATTTTTTTTTTTTTTTTTGGAATTATTCTTTTGTTCTTTGGTAATGGAAATGATTTGATTGGTGTATTTAAAATATTTTCTATTATCTCGATTAATAGGTAGAATTATTTGATTGTCGAGAATGATGTCAATGCAATGAAATGGGTAAAGAACTCTCATAGATATGTTAAACCCCTGAATCACGAACGTTAAAACTACTAAATTAAGTTAATTTCATTCCAAATGAAGGTAACTCTCCCAAATTTGATCTAACACATTAAAATCTTTAGATCTAAATATCAAAGAACTCCAAGACATAAAAAATTACTCCAAATGAAAGTAAGATATGAATTACCTTGTTGATCGAATATTTCAAAATAAGAACACTTGTGTGAGATTCGAATCACTCCACAAATAAGATTGATCAAGTCATATTTGAATGATTCTAAGTCATGCACTTGTCTAATTTTGTTGATGTGTCAATCCAATTCTTAAATTGGTTGATGAGGCAAATGACACATCATGATGACATGAGACCAATCGAGTGCTATCATGTGGTAATTGTTAGGAATTAGGCTCTCCAATAATGGTATGATATGACCAATGGAGGATGGTATTCGTCACTTATAAACTCATGATGTTCCACTAAATTAACCAAGTGGACTCACTCCCAATAATCCTCAATAGTAATACTTGTTGGGCATGTGGTAATTCTATCGGTCAAAATTTTCAATTTTTTTACTTTTATAAAAAAGAATGGAATTAGATTTGTTTAAGTTATTCTTGAGCTAGTTGGGCATGTGATGAAGGTAGAATTGATCTCAACCTCGGAAAAGTTGAGATTGACCACGGGCGTGAAGATACTAGAGTCAACGTCGACGGCTCGAGGTACATCTTCCCTTGA

mRNA sequence

ATGATCTCGATTTTGGAATACGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCAAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGACAGTTGGGCATGTGATGAAGGTAGAATTGATCTCAACCTCGGAAAAGTTGAGATTGACCACGGGCGTGAAGATACTAGAGTCAACGTCGACGGCTCGAGGTACATCTTCCCTTGA

Coding sequence (CDS)

ATGATCTCGATTTTGGAATACGATGTCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCTTTGTTCAGGTTCTTGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTTAGTATTCGTCGGTTGCTAGCAGCTCTTTCCGATCTTCCACCCGGCGGTGAGCTTTCTCCGTCGTCAAGTGTTCTAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGACAGTTGGGCATGTGATGAAGGTAGAATTGATCTCAACCTCGGAAAAGTTGAGATTGACCACGGGCGTGAAGATACTAGAGTCAACGTCGACGGCTCGAGGTACATCTTCCCTTGA

Protein sequence

MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGELSPSSSVLTPSSVRRERSDDSDSWACDEGRIDLNLGKVEIDHGREDTRVNVDGSRYIFP

Homology

[Close]

BLAST of Csor.00g186610.m01 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241 bits (615), Expect = 6.25e-80
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
           MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1   MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61  AALSDLPPGGELSPSSSVLTPSSVRRERSDDSDSWACDEGRIDLNLGKVEIDHGREDTRV 120
           AALSDLPPGGELSPSSSVLTPSSVRRERSDDSDSWACDEGRIDLNLGKVEIDHGREDTRV
Sbjct: 61  AALSDLPPGGELSPSSSVLTPSSVRRERSDDSDSWACDEGRIDLNLGKVEIDHGREDTRV 120

Query: 121 NVDGSRYIFP 130
           NVDGSRYIFP
Sbjct: 121 NVDGSRYIFP 130

[Close]

BLAST of Csor.00g186610.m01 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159 bits (402), Expect = 6.03e-48
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MISILE+DVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 92
          AALSDLPPGGELSPSSSVLTPSSVRRERSDDS
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 92

[Close]

BLAST of Csor.00g186610.m01 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 7.46e-35
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  I + D   +F++IAMFVF+Q+LVYLILSKSSNLFSND+K+RSLSFKPARSVSIRR L
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91
          AALSDLPPGGELSPS+ V TPSS RR+RSDD
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDD 91

[Close]

BLAST of Csor.00g186610.m01 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 124 bits (312), Expect = 3.03e-34
Identity = 71/91 (78.02%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  ILE D   +F+KIAMF FVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDD 91
          AALSDLPPGGE+SP+  V TPSS RR+ SDD
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDD 91

[Close]

BLAST of Csor.00g186610.m01 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 uncharacterized protein E6C27_scaffold1614G00240 [Cucumis melo var. makuwa] >TYK04160.1 uncharacterized protein E5676_scaffold148G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 2.21e-30
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 6  EYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSD 65
          E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSD
Sbjct: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65

Query: 66 LPPGGELSPSSSVLTPSSVRRERSDD 91
          LPPGGELSPSS       VRR RSDD
Sbjct: 66 LPPGGELSPSS-------VRRGRSDD 84

[Close]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.07e-30
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 6  EYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSD 65
          E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSD
Sbjct: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65

Query: 66 LPPGGELSPSSSVLTPSSVRRERSDD 91
          LPPGGELSPSS       VRR RSDD
Sbjct: 66 LPPGGELSPSS-------VRRGRSDD 84

[Close]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 1.07e-30
Identity = 68/86 (79.07%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 6  EYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSD 65
          E D   +F++IAMFVFVQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR LAALSD
Sbjct: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65

Query: 66 LPPGGELSPSSSVLTPSSVRRERSDD 91
          LPPGGELSPSS       VRR RSDD
Sbjct: 66 LPPGGELSPSS-------VRRGRSDD 84

[Close]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL
Match: M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.39e-21
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 9  VAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPP 68
          V+ + +K+ +F  VQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PP
Sbjct: 4  VSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPP 63

Query: 69 GGELSPSSSVLTPSSVRRERSDDSDSW 95
          GGE SPSSS        R  +DDS SW
Sbjct: 64 GGETSPSSSS-------RSLADDS-SW 82

[Close]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL
Match: A0A6J0PQA3 (uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109506509 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.02e-21
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 10 AGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPG 69
          + + LK+AMFV VQ LVYLILSKSSN+FS  K  RSLSF+  RSVSIRR+LAALSDLPPG
Sbjct: 12 SDVLLKVAMFVLVQALVYLILSKSSNIFSTTKT-RSLSFRTVRSVSIRRMLAALSDLPPG 71

Query: 70 GELSPSSSVLTPSSVRRERSD 90
          GE SPSSSV   SS   +  D
Sbjct: 72 GEPSPSSSVSPASSPSSDHKD 91

[Close]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL
Match: A0A4S8IZ19 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.02e-21
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 9  VAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPP 68
          V+ + +K+ +F  VQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PP
Sbjct: 8  VSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPP 67

Query: 69 GGELSPSSSVLTPSSVRRERSDDSDSW 95
          GGE SPSSS        R  +DDS SW
Sbjct: 68 GGETSPSSSS-------RSLADDS-SW 86

[Close]

BLAST of Csor.00g186610.m01 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 5  LEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAAL 64
          +E    G+ +K+++F  +Q LVYLILSKSS++FS  K + R+ SF+ ARS+SIRR+LA L
Sbjct: 1  MEGSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVL 60

Query: 65 SDLPPGGELSPS-------SSVLTPSSV 85
           D+P GGE+SPS       SS+ +PS +
Sbjct: 61 QDMPAGGEMSPSAMGPSLASSLSSPSEI 88

[Close]

BLAST of Csor.00g186610.m01 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-12
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 12 IFLKIAMFVFVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAALSDLPPGG 71
          + +K+A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR+LAAL D+P G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 72 ELSPSSSVLTPSS 84
          ++SPSS+  + SS
Sbjct: 68 DMSPSSNGSSSSS 80

The following BLAST results are available for this feature:

BLAST of Csor.00g186610.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g186610.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581607.1	6.25e-80	100.00	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018107.1	6.03e-48	98.91	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011651805.2	7.46e-35	76.92	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_038905322.1	3.03e-34	78.02	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
XP_008461750.1	2.21e-30	79.07	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo] >KAA0052808.1 unc...	[more]

BLAST of Csor.00g186610.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	1.07e-30	79.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	1.07e-30	79.07	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
M0RJ50	5.39e-21	62.07	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A6J0PQA3	6.02e-21	67.90	uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]
A0A4S8IZ19	6.02e-21	62.07	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb10t12480 PE=4 SV=...	[more]

BLAST of Csor.00g186610.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	1.8e-13	48.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	7.4e-12	54.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 9..89
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 9..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g186610	Csor.00g186610	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.CDS02	Csor.00g186610.m01.CDS02	CDS
Csor.00g186610.m01.CDS01	Csor.00g186610.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.terminal01	Csor.00g186610.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.stop_codon01	Csor.00g186610.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.intron01	Csor.00g186610.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.initial01	Csor.00g186610.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01.start_codon01	Csor.00g186610.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g186610.m01	Csor.00g186610.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane