Csor.00g173490.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g173490.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	CRM domain-containing protein
Location	Csor_Chr11: 6205571 .. 6208599 (-)
Sequence length	855
RNA-Seq Expression	Csor.00g173490.m01
Synteny	Csor.00g173490.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATCCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGGTTTGTTGATTCTTTCAATGTTCTCTTCTCTGTTTGATCGAGTTATTTCTTGGCTGATTTGATATCCGTAAAGTCTATATGGTTTAAGAATTAGGGTTCATATAGCAACCATTTTAGGGGAACCAGTGCTGTGAATTTCAATTTTCTTTGCAATTTTTATCTCCTCTTCTTCTTGAACAATTTGAATAGAAATGGCATTCTGGACTTAAAGTGCTTGTTCGCAGTTAGGAAAACAATTACATTGTTTGTTGGAGAAATGAAATTCTTCTGTTGAAACGTAGTTTAGAGCTACTATAGAAAATTTATGGGTTGATCAACTGAAGGGAATGGAAAATGTTTGCATCTAAACTGCAATGTGGATGAACAGTTTGACGAATAGACATTTTGTGAGTACTCTGTTCTTTTTATTTTTGACAAGAAACAAAACTTATCATGAATTAATGAAACAAAGGATCAGAACCCCCAAAATAAATTGAATCCTGAAAAGAGAATCCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTAGATGTGTTGGATGAACATCGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAGGAATACTCCGTTGGTTTGAGGTCTTTTAGGGAATCCCAAAGAAAAGCCATGAGAGCTTATATTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCATGTAACATGGTTTCAGAGCCATGCCCTAAACTTAACCATGTCAATAGAATCCTCAAATGTCAAACAAAGGACTCCAAAAGAAAAAAAAAAAGGACTCGAGACTCCTCGAAGGCATAGTAAAAAATGACTAAGACTCCTAAAGAAAAGGAGTTGAGCCTCAATTAAGGGGAGACGTACTTTGTTCGAGGGAGGTGTTTGGATGAAAATACCACGTCGGCTAATTTAGGTAATGATCATGGGTTTATAATCAAGAATACTCTGTCCATTGGTTTGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGATAATATCATATCATTGTGGAGGGTCTCGTTCATCTAACAAGATGAACACCAATGGGAAACATGAAATCTGGGGGACTCAGTGATCAAACCAATGAAAGAACCTTTGAAGCCAAACCATATGTAAAACCAATATAAAAAAGCCTCCCTTGCGTTAGAGAAGAGACTGAAAGAAATTCCTCTAATGCAATTAGAAGCTCGTGAAATGGATTTTCAAAAGCAAACAATGGTATGAATATCAAACTGTGAAAAAAGGGCTCCAAAAACACCTTTGCACCAAAAAGACTGCAGCCTTAACCAAAGCTTAAAGCCTCAAACAGGCAACCAAACGAAGCTGAAACACTTGAAAGAAGAAACAAAACACCAAAATCCTTAGAGAAACCAACCAGAGCTTGGCAAAAGTGAACACTGACACAACTTTCGTCATGAACCAGTAAAGGAATTCCATGAAACTCGACACCATTGGCTTCACTAAGTGAACCGAAATTGGCTGGCATGGAGGGTGGAGGGTAAGTGAAGGGTCATCAACGGATGAAGAGGCAACTTGCTGATTAGAAGGCACCAAAAGCCTCTTACAACATTCTTTCTTCAATAAAATTTGAATTCAAAGAATTTTCCTCATGACATGGTTGGTATGACGAATACGCCCCAACTTCACGGATATAAGACAAAGGATAGGCTGGATTAGGACCCTTTTTTACATCTTTAACATTCCAGGACTTCGAAGACTCAAAAGGCATAATTAGCCTTTAGGTCTCATCATGCTAGATTAAGTCCCTTTTCGATATAGTTTGACTCTTTTTGTTTGGAGTTGGTTTTGCGTATTTTCTTGTATTTTCTAATTTTTTTTAATGATAGTCCATTAAAAAAAAAAAAAAAAAAGCTAAGGTTGACTGTTTTTTCTGATCGGATCTTGTTTGTGAAGACGAATATGTTGGCATCTCGAATCCTGTTTAGTTTTCTGTATGCGAACTTGACTAATGGCTTCGATTTCTGCATTCCACGTAAATGTCGAATATTAGAAAATCCTTAGACCAAAGTAGAATTAAAAAAATTGAACCATTGGATACACAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGGTAAAGTATATGGATTGACATTCTTGATCTTATCTCAGAATGAATTACTCTTGCTTCTTAAATTCTAATACTCATATTCATGCAGAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGA

mRNA sequence

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATCCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGA

Coding sequence (CDS)

ATGGGAGCTTCGATAATGTCTTCTCCCTCTCATTCTCACCTCATCCACTCTCTTCTTCTCCGGTCAGTTCCTTCTTCTCTCTCGACTTTCCTCTGTAGACCCTCCGCCGTCATCTCAGCCGCTTGCTCCCATCAATTTAAACCCAACAGTTCTATCTTCCTCATCCGCCAATCTCCTCACCGTTCCCGGTCTTTCACTCCCTCAGCATCCGTTTCATTCTCTCGCTCCTTTTCTTCCACCATTTCTGATACCTCTGCGGTCGGATTTGAAGACGACGATGTAATTGATGATGACGAAGAAAGTGATTACGAAGATGAAGTTGAAATCGAAGATTTCGAACTGGAAGACAACACCGTTGAGGATGGATTGGAAACTGCTGTGGCTTCGGACTCGTCTTCGGCGGTGGTGAGTATAAGTGAAGTGAAGAATATTCCGAGTTTGACGGTTAAGGAGAAGAAAGAGTTGGCATCGTACGCTCATAGCTTGGGGAAGAAGCTGAAGAGTCAGTTGGTGGGAAAATCTGGCGTCACTCCTGGCTTGGCTACTTCTTTCATCGAGACACTTGAAGCCAACGAGCTTCTCAAGATCAAAGTTCTGGGGAACTGTCCAGGGGAGCTGGAGGATGTGGTGAGGCAATTGGAGGAATCAACGGGGTCTGTGGTAGTGAGCAAAATTGGGAGAACTGTTATCATTTATAGGCCCAGCATCTCTAAAATGAAAGCAGAGGAAGAAAAACGACGTGCCCGAAAAATGTATGTGAGAAAAGAACCCGATCGAGTGAAACTATTTTTGCAGAATAAAGTACAAACACCGAGAAGCTCGAACCGAGGTCGTCGTGGAAGCAGCAGGTTTTGA

Protein sequence

MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPHRSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF

Homology

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy Swiss-Prot
Match: P54454 (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN=yqeI PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-08
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 147 LTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGEL 206
           LT K+K+ L S AH L    +   VGK GV   +     E LEA EL+K+ VL NC  + 
Sbjct: 2   LTGKQKRFLRSKAHHLTPIFQ---VGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 61

Query: 207 EDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE 243
            DV   L + + S +V  IG T+++Y+ S    + E
Sbjct: 62  NDVAEALVKGSRSQLVQTIGNTIVLYKESKENKQIE 94

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy Swiss-Prot
Match: P0AGK6 (RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy Swiss-Prot
Match: P0AGK5 (RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yhbY PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy Swiss-Prot
Match: P0AGK4 (RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05
Identity = 28/90 (31.11%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 146 SLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGE 205
           +L+ K+K+ L   AH L   +   L+G +G+T G+     + LE +EL+K+K+       
Sbjct: 2   NLSTKQKQHLKGLAHPLKPVV---LLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRET 61

Query: 206 LEDVVRQLEESTGSVVVSKIGRTVIIYRPS 236
              +V  +   TG+  V  IG+T+++YRP+
Sbjct: 62  KTLIVEAIVRETGACNVQVIGKTLVLYRPT 88

[Close]

BLAST of Csor.00g173490.m01 vs. NCBI nr
Match: KAG6588422.1 (hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 513 bits (1321), Expect = 1.76e-182
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120
           RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE
Sbjct: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120

Query: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
           DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240
           ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK
Sbjct: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240

Query: 241 AEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           AEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF
Sbjct: 241 AEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284

[Close]

BLAST of Csor.00g173490.m01 vs. NCBI nr
Match: XP_022971306.1 (uncharacterized protein LOC111470060 [Cucurbita maxima])

HSP 1 Score: 501 bits (1289), Expect = 1.33e-177
Identity = 278/284 (97.89%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120
           RSRSFTPSASVSFSRSFSS IS TSAVGFEDDDVIDDD+ESDYEDEVEIEDFELEDNTVE
Sbjct: 61  RSRSFTPSASVSFSRSFSSIISGTSAVGFEDDDVIDDDDESDYEDEVEIEDFELEDNTVE 120

Query: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
           DGLETAVASDSSSAVVS SEVK+IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240
           ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK
Sbjct: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240

Query: 241 AEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           AEEEKRRARK+YVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF
Sbjct: 241 AEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284

[Close]

BLAST of Csor.00g173490.m01 vs. NCBI nr
Match: XP_023529380.1 (uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 494 bits (1273), Expect = 4.53e-175
Identity = 278/290 (95.86%), Postives = 281/290 (96.90%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL RPSA ISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSRPSAAISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIED------FEL 120
           RSRSF+PSASVSFSRSFSSTISDTSAVGFEDDDVIDDD+ESDYEDEVEIED      FEL
Sbjct: 61  RSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYEDEVEIEDEVEIEDFEL 120

Query: 121 EDNTVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180
           EDNTVEDGLETAVASDSSSAVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS
Sbjct: 121 EDNTVEDGLETAVASDSSSAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKS 180

Query: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRP 240
           GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVV+QLEESTGSVVVSKIGRTVIIYRP
Sbjct: 181 GVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVKQLEESTGSVVVSKIGRTVIIYRP 240

Query: 241 SISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           SISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF
Sbjct: 241 SISKMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 290

[Close]

BLAST of Csor.00g173490.m01 vs. NCBI nr
Match: KAG7022267.1 (yqeI [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 479 bits (1234), Expect = 3.82e-169
Identity = 266/269 (98.88%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120
           RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE
Sbjct: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120

Query: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
           DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240
           ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK
Sbjct: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240

Query: 241 AEEEKRRARKMYVRKEPDRVKLFLQNKVQ 269
           AEEEKRRARKMYVRKEPDRVKLFLQ K++
Sbjct: 241 AEEEKRRARKMYVRKEPDRVKLFLQVKIK 269

[Close]

BLAST of Csor.00g173490.m01 vs. NCBI nr
Match: XP_008448058.1 (PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo])

HSP 1 Score: 367 bits (941), Expect = 1.26e-124
Identity = 213/287 (74.22%), Postives = 242/287 (84.32%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV--ISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF  +PSA    S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISSHSHSHS-HSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDEESDYEDEVEIEDFELEDN 120
           PH SR FTPS S+SFSR FSST+S  S V F++ DD I+D +ESDYEDEVE+ED      
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ SS V++ +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSIS 240
           PGLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+
Sbjct: 181 PGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSIT 240

Query: 241 KMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           KMKAEEEKRR+RK+Y+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 241 KMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 280

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL
Match: A0A6J1I2Z3 (uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060 PE=4 SV=1)

HSP 1 Score: 501 bits (1289), Expect = 6.43e-178
Identity = 278/284 (97.89%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120
           RSRSFTPSASVSFSRSFSS IS TSAVGFEDDDVIDDD+ESDYEDEVEIEDFELEDNTVE
Sbjct: 61  RSRSFTPSASVSFSRSFSSIISGTSAVGFEDDDVIDDDDESDYEDEVEIEDFELEDNTVE 120

Query: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
           DGLETAVASDSSSAVVS SEVK+IPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSSAVVSRSEVKSIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240
           ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK
Sbjct: 181 ATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMK 240

Query: 241 AEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           AEEEKRRARK+YVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF
Sbjct: 241 AEEEKRRARKIYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL
Match: A0A1S3BJF7 (uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=4 SV=1)

HSP 1 Score: 367 bits (941), Expect = 6.10e-125
Identity = 213/287 (74.22%), Postives = 242/287 (84.32%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV--ISAACSHQFKPNSSIFLIRQS 60
           M ASI+SS SHSH  HSLLLRSVPSS STF  +PSA    S  C HQFKP+SS FL R+S
Sbjct: 1   MRASIISSHSHSHS-HSLLLRSVPSSFSTFFSKPSATAAFSTVCFHQFKPSSSTFLTRKS 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDEESDYEDEVEIEDFELEDN 120
           PH SR FTPS S+SFSR FSST+S  S V F++ DD I+D +ESDYEDEVE+ED      
Sbjct: 61  PHYSRPFTPSTSLSFSRFFSSTVSGPSEVRFDEGDDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
           +V DG E  VAS+ SS V++ +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 SVGDGTENGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSIS 240
           PGLATSFIETLEANELLKIK+LGNCP +LEDVVR+LEESTGSVVV++IGRTVIIYRPSI+
Sbjct: 181 PGLATSFIETLEANELLKIKILGNCPEDLEDVVRKLEESTGSVVVNQIGRTVIIYRPSIT 240

Query: 241 KMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           KMKAEEEKRR+RK+Y+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 241 KMKAEEEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 280

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL
Match: A0A0A0K2C3 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV=1)

HSP 1 Score: 360 bits (925), Expect = 1.39e-122
Identity = 212/286 (74.13%), Postives = 239/286 (83.57%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAV--ISAACSHQFKPNSSIFLIRQS 60
           MGASI+SS SHS     LLLRS+PSS STF  +PSA   IS  C HQFKP+SS  L R+S
Sbjct: 1   MGASIISSHSHS-----LLLRSLPSSFSTFFSKPSAAAAISTVCFHQFKPSSSTLLTRES 60

Query: 61  PHRSRSFTPSASVSFSRSFSSTISDTSAVGFED-DDVIDDDEESDYEDEVEIEDFELEDN 120
           PH  R FTPSA +SFSRSFSSTISD S V F++ DD I+D +ESDYEDEVE+ED      
Sbjct: 61  PHHYRPFTPSAPLSFSRSFSSTISDPSEVIFDEADDEIEDKDESDYEDEVEMED------ 120

Query: 121 TVEDGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVT 180
            V DG ET VAS+ SS ++S +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVT
Sbjct: 121 EVGDGTETGVASELSSPIMSRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVT 180

Query: 181 PGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSIS 240
           PGLATSFIETLEANELLKIK+LGNCP ELEDVVR+L ESTGSVVV++IGRTVIIYRPSI+
Sbjct: 181 PGLATSFIETLEANELLKIKILGNCPEELEDVVRKLAESTGSVVVNQIGRTVIIYRPSIT 240

Query: 241 KMKAEEEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSR 283
           KMKAEEEKRRARK+Y+RKEPDRVK  LQ K++TP+SSNRGRRG+SR
Sbjct: 241 KMKAEEEKRRARKVYMRKEPDRVKSILQKKIETPQSSNRGRRGTSR 275

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL
Match: A0A6J1EIK7 (uncharacterized protein LOC111434725 OS=Cucurbita moschata OX=3662 GN=LOC111434725 PE=4 SV=1)

HSP 1 Score: 330 bits (847), Expect = 1.20e-111
Identity = 187/195 (95.90%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLCRPSAVISAACSHQFKPNSSIFLIRQSPH 60
           MGASIMSSPSHSHLIHSLLLRSVPSSLSTFL +PSA ISAACSHQFKPNSSIFLIRQSPH
Sbjct: 1   MGASIMSSPSHSHLIHSLLLRSVPSSLSTFLSKPSAAISAACSHQFKPNSSIFLIRQSPH 60

Query: 61  RSRSFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVE 120
           RSRSF+PSASVSFSRSFSSTISDTSAVGFEDDDVIDDD+ESDY DEVEIEDFELEDNTVE
Sbjct: 61  RSRSFSPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDDESDYGDEVEIEDFELEDNTVE 120

Query: 121 DGLETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180
           DGLETAVASDSS AVVS SEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL
Sbjct: 121 DGLETAVASDSSPAVVSRSEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGL 180

Query: 181 ATSFIETLEANELLK 195
           ATSFIETLEANELLK
Sbjct: 181 ATSFIETLEANELLK 195

[Close]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL
Match: A0A5D3DFJ1 (Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00840 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 9.07e-85
Identity = 136/162 (83.95%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 123 LETAVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLAT 182
           +ET VAS+ SS V++ +EVKNIPSLT+KEKKELASYAH LGKKLKSQLVGKSGVTPGLAT
Sbjct: 1   METGVASELSSPVMNRNEVKNIPSLTIKEKKELASYAHGLGKKLKSQLVGKSGVTPGLAT 60

Query: 183 SFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAE 242
           SFIETLEANELLKIK+LGNCP ELEDVVR+LEESTGSVVV++IGRTVIIYRPSI+KMKAE
Sbjct: 61  SFIETLEANELLKIKILGNCPEELEDVVRKLEESTGSVVVNQIGRTVIIYRPSITKMKAE 120

Query: 243 EEKRRARKMYVRKEPDRVKLFLQNKVQTPRSSNRGRRGSSRF 284
           EEKRR+RK+Y+RKEPDRVK  LQ KV+TPRSSNRGRRG+SR+
Sbjct: 121 EEKRRSRKIYIRKEPDRVKSILQKKVETPRSSNRGRRGTSRY 162

[Close]

BLAST of Csor.00g173490.m01 vs. TAIR 10
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-35
Identity = 127/305 (41.64%), Postives = 164/305 (53.77%), Query Frame = 0


Query: 7   SSPSHSHLIHSLLLRSVPSSLSTFLCRP---SAVISAACSHQFKPNSSIFLIRQSPHRSR 66
           +S S +HLIH+LL    P S      RP   SA +S + +H+ KP    F  +  P  S 
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQS-NHRNKPRFQSFSSKPLPCHSA 67

Query: 67  SFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYED----EVEIEDFELEDN-- 126
           S          +SFSS           D+  +++DEES+ ED    E E ED E ED   
Sbjct: 68  SLV-------VKSFSSI----------DEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQD 127

Query: 127 ----TVEDGLETAVASDSSSAVVSISEVK----------NIPSLTVKEKKELASYAHSLG 186
                 E G+E + AS+  S +    E            +   L++KEKKELASYAHSLG
Sbjct: 128 SGVVVSERGIEDSEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLG 187

Query: 187 KKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVS 246
            KLK QLVGKSGVT  +  SF+ETLE NELLK+K+    P ELED V+ LEE+TGSV V 
Sbjct: 188 DKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVG 247

Query: 247 KIGRTVIIYRPSISKMKAEEEKRRARKMYVRKEPD-----RVKLFLQNKVQTPRSSNRGR 284
           +IGRTVI+YRPS +KMKAE +K+   +M + +          K F   +  + R   RGR
Sbjct: 248 QIGRTVILYRPSPTKMKAEAKKKEVERMSITRRQKYANTRPTKPF--RREYSERPDGRGR 292

[Close]

BLAST of Csor.00g173490.m01 vs. TAIR 10
Match: AT4G39040.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-34
Identity = 117/272 (43.01%), Postives = 152/272 (55.88%), Query Frame = 0


Query: 7   SSPSHSHLIHSLLLRSVPSSLSTFLCRP---SAVISAACSHQFKPNSSIFLIRQSPHRSR 66
           +S S +HLIH+LL    P S      RP   SA +S + +H+ KP    F  +  P  S 
Sbjct: 8   ASCSSTHLIHNLLRHPKPPSPVCLFLRPFCFSASVSQS-NHRNKPRFQSFSSKPLPCHSA 67

Query: 67  SFTPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYED----EVEIEDFELEDN-- 126
           S          +SFSS           D+  +++DEES+ ED    E E ED E ED   
Sbjct: 68  SLV-------VKSFSSI----------DEPDLEEDEESEDEDFSAEEYEYEDEEEEDEQD 127

Query: 127 ----TVEDGLETAVASDSSSAVVSISEVK----------NIPSLTVKEKKELASYAHSLG 186
                 E G+E + AS+  S +    E            +   L++KEKKELASYAHSLG
Sbjct: 128 SGVVVSERGIEDSEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLG 187

Query: 187 KKLKSQLVGKSGVTPGLATSFIETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVS 246
            KLK QLVGKSGVT  +  SF+ETLE NELLK+K+    P ELED V+ LEE+TGSV V 
Sbjct: 188 DKLKCQLVGKSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVG 247

Query: 247 KIGRTVIIYRPSISKMKAEEEKRRARKMYVRK 256
           +IGRTVI+YRPS +KMKAE +K+   +M + +
Sbjct: 248 QIGRTVILYRPSPTKMKAEAKKKEVERMSITR 261

[Close]

BLAST of Csor.00g173490.m01 vs. TAIR 10
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 131.7 bits (330), Expect = 9.1e-31
Identity = 102/242 (42.15%), Postives = 140/242 (57.85%), Query Frame = 0


Query: 8   SPSHSHLIHSLLLRSVPSSLSTFLCRPSAV--ISAACSHQFKPNSSIFLIRQSPHRSRSF 67
           S + ++LIH LL    P+S      RP +V  +    SH    +SS+ L    P    SF
Sbjct: 6   SSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSLPL----PRPYISF 65

Query: 68  TPSASVSFSRSFSSTISDTSAVGFEDDDVIDDDEESDYEDEVEIEDFELEDNTVEDGLET 127
           +P   +   +SFSS               +D+ E+ +    +     E+ D+  EDG E 
Sbjct: 66  SP---LLVPKSFSS---------------VDESEQDEDNVSLVASLNEINDDGQEDGSEL 125

Query: 128 AVASDSSSAVVSISEVKNIPSLTVKEKKELASYAHSLGKKLKSQLVGKSGVTPGLATSFI 187
            + S   +   S  E      L+ KEK++LASYAH LG KLKSQLVGKSGVT  +  SF+
Sbjct: 126 TMVSMRENRRSSALE------LSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFV 185

Query: 188 ETLEANELLKIKVLGNCPGELEDVVRQLEESTGSVVVSKIGRTVIIYRPSISKMKAEEEK 247
           ETLE NELLK+K+   CPGELED++ +LEE+TGSV V +I RTVI+YRPS +K+KA+E+K
Sbjct: 186 ETLEKNELLKVKIHRTCPGELEDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDK 219

The following BLAST results are available for this feature:

BLAST of Csor.00g173490.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P54454	3.6e-08	37.50	Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) OX=224308 GN...	[more]
P0AGK6	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli O157:H7 OX=83334 GN=yhbY PE=4 SV=1	[more]
P0AGK5	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ...	[more]
P0AGK4	3.8e-05	31.11	RNA-binding protein YhbY OS=Escherichia coli (strain K12) OX=83333 GN=yhbY PE=1 ...	[more]

BLAST of Csor.00g173490.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588422.1	1.76e-182	100.00	hypothetical protein SDJN03_16987, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022971306.1	1.33e-177	97.89	uncharacterized protein LOC111470060 [Cucurbita maxima]	[more]
XP_023529380.1	4.53e-175	95.86	uncharacterized protein LOC111792256 [Cucurbita pepo subsp. pepo]	[more]
KAG7022267.1	3.82e-169	98.88	yqeI [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008448058.1	1.26e-124	74.22	PREDICTED: uncharacterized protein LOC103490350 [Cucumis melo]	[more]

BLAST of Csor.00g173490.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I2Z3	6.43e-178	97.89	uncharacterized protein LOC111470060 OS=Cucurbita maxima OX=3661 GN=LOC111470060...	[more]
A0A1S3BJF7	6.10e-125	74.22	uncharacterized protein LOC103490350 OS=Cucumis melo OX=3656 GN=LOC103490350 PE=...	[more]
A0A0A0K2C3	1.39e-122	74.13	CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G004710 PE=4 SV...	[more]
A0A6J1EIK7	1.20e-111	95.90	uncharacterized protein LOC111434725 OS=Cucurbita moschata OX=3662 GN=LOC1114347...	[more]
A0A5D3DFJ1	9.07e-85	83.95	Putative RNA-binding CRS1 / YhbY domain protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Csor.00g173490.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39040.1	4.7e-35	41.64	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT4G39040.2	2.3e-34	43.01	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT2G21350.1	9.1e-31	42.15	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 147..233 e-value: 3.8E-23 score: 92.9
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 147..233 e-value: 8.8E-16 score: 57.8
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 145..244 score: 16.908628
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 146..244 e-value: 1.6E-27 score: 97.3
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 146..235
None	No IPR available	PANTHER	PTHR47714	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 7..284
None	No IPR available	PANTHER	PTHR47714:SF1	CRS1/YHBY DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 7..284

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g173490	Csor.00g173490	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.CDS01	Csor.00g173490.m01.CDS01	CDS
Csor.00g173490.m01.CDS02	Csor.00g173490.m01.CDS02	CDS
Csor.00g173490.m01.CDS03	Csor.00g173490.m01.CDS03	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.stop_codon01	Csor.00g173490.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.terminal01	Csor.00g173490.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.intron01	Csor.00g173490.m01.intron01	intron
Csor.00g173490.m01.intron02	Csor.00g173490.m01.intron02	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.internal01	Csor.00g173490.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.initial01	Csor.00g173490.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01.start_codon01	Csor.00g173490.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g173490.m01	Csor.00g173490.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding