Csor.00g159960.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g159960.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr15: 11227923 .. 11230855 (+)
Sequence length237
RNA-Seq ExpressionCsor.00g159960.m01
SyntenyCsor.00g159960.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGATAAAGGGGAAGAAGGGAAGGGTTTTTGAAGAAAATGAAAGGGTTAGGTTATGACACGTGGGCTAGGGTTCTAGAATATTCTTCACCAATCTAATCTTCTACACCCTTGGATTTAATATTTTCCTCAAATACAAATTGGGCCTCAAAACTCGTTTTGGGCCCTTTCAATTTCAAATTGGGCCTAAAAACGGCGTCGTTCTCTGCCCTTCGCAATTAGTTTCTTTAACATGTCATTTCGAAGTCTGAAGTTCGAGTGCTGTAGAGTTCAAATTTTAATTCTAATTTGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACGATGGTGATGGAGATATTCATAAGCAACAATAACATTATAAGATATCAAACAATTACATAAATTAATAAATTAGAAATAAAATGTTGTCTCATAAATATTTTTCACTCAAACAATATTTATTTAAAAATGAAACCAATTCAATCCAACCATTCAATTTTTTTTAATAAAAGTAAAATGTTAATATATATAAAAATCATCAACCAACTAAATTAAATTAATTTAATTTGAACACAAAAGAATTACACAAAGAAACTAAAAGACAAAAAGTTCTCCCTTTACTCCTTTATTACATAGATTTTTGTATTTCTCAAAATAAAAGATAAATAGATTTTTGTCACAATTTTAAAAGAAGAAATATTAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAACGTGTGCATTTACCAAAGCACCCCTCCAACAAAAAACAAAAAACATTACGTAAGGAGGCCAAGTAGAAGAAAATGATTATAACACAGCGTAGACATCATCAAATAATAAGAAAATCTTTGTTGTCGTTTAGTGTGAAGCCAAAAGGCTATTTATGGAATTCAAGGGGCAATAAAGAGGGGTGCGTGGGGTGCCCCATTCATCAAAAAATGGTGTTCAAGATTCCATATGAGCCGCCCACATCAATTTCCTTTTATTTTATTTTATTTTTATTTTTAAATTTATTTAATTACCACATCACTTCCACCACAATTTCTTTCTTCTCTTCCACTTGGACTTGAGTTCATAGTTGGCTACTTTTTTTGTTTTCCCCCATTTCTCTCAATCTCCACCAAGATTTCAACATGCCTTAGATTGCTTCTTCAGTTTCTACTCTCTTGGATTATCATCTACAAATTTCTGTTCCACGGTACATAATTTGCGCTTGCTTTTCCTTCCTCCGATTTCCTGATTTTGCCTTTTCCTTTCTCTTAGATTTTTGTTGTGTTTTGAGGTATGTTGTTCTGGATTTGGTTTCTATGTTTAGTTTTGTTTCTGTTTTACTTGAATCTATTAGAATTAGCAATAGAATCTTCTAGTGTCACTGATTATCCATGTGTGCTGTGCATTTTCTGGCTACAAATCTCAACTTTTGTTTCCGGGTCGCATCGTCTTTCGATATGATGATTATGATTGAACGCACACATCTTTATTTTGAATCTCTCTCCCTCTCTGTGTATTATAGCTTTTCTTTTTCTTAGTCATTGAATTGAGATGTACAGTTGAAGATCTAGAGAATGCTCTCGTTTAATTGATTTTTTATTTGCATGATTGAGGCCTTTTTATTTGATTTGCATGATTTAGCCCTTTTACTACCCAAGAGTTCGTTTTCTTGATTTTCTGTGGGATTGCACCTTGTGATTCGTGTCGTCTATTTTGGTTGAAGCGGGTTGACTTTATTTCTATTATTGGCTTGGTGTACGATTTGAGTGAAGTTCTGTTTTCTTTTTGGTTAAGAAATCCTATTCAAGCCTAATCAGTGATTGCTGTAAGTTTAAAGGGAAATTAGTGACCAGAACAGGTTTACCGCAGATGAATCCTTATTGCACTTTAATACTAATTCTAGTTCCTTTTTCTTTTTTATCAGGAAGTTAGGAGCGAAATAGAAAACCAGTTTTTTTTAAGAACATGAAAGAACAAAATCTAAGGAGAGACCCTCAGAAAAGATTAAAAAGGGATCTGCCTGAACCAAGGGGGACAGCCTCACAAAACAATTATAAAATTGGCTCCCAACTTTTGGTAACTAAAAACAAAAGGATAATTACAGAATAAAGAGCCCATAGAGAACTATTGGAAAATACCACACCCCACACATCTTCCCAAGAACTATCTTTTCCGATGAACACTTGTATTTCTTTCCAGCTATATAAACCAAAAAGATAGCCAAGGAACTGACCTGCCAAAGAATCTGATTCCTTCTCATCTGCTTAGTTATTAGTTTTCTTGTACATTTCTCTTGCATCCACATGACAGAGAGAGATTTTGACCACACCTACCATGTGTCCAAATGTGTTTACAATGAATATGCATCTAAGTTTGTATATAATTGGTTGTGCCTTTATGAGGTTGTAAAGAAGCAACGATAATAAATAAAAAGGTCCAAAGTAATGTTTCTTTAAGTGTTGAAGTTGTGGATTGATATGTTATCCCATGTTCCTCTAGTGCTATTTTTAAACCATGTAACCAACCAAAGAATTAAACTTAAATTTTGGACATTATAGTGATTAATGTTGTCGTGGACATCCTGCCACTGCATTCATTCCAGATTGGTGATTATTGTTGTGTCTGTTCATAACTTCATGTATATTTCAATGAGAAAGCCTTTTAATTTCAGAAAGTTGGGATGTATAATCTTGTGACATATTTCTGTAATGCTCTCAGAGTTGTATTCACAGTAGTCATGTGATTGGAGGTTTACTTTAAAAGCATTCTTCCTAACATCTACATTAAATTCCTCTTTGCTCTGACAGTACCTACTATTCTGCCATTGTTGTGTTCAAGAATGTATGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTTTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

mRNA sequence

ATGAAGGAGATAAAGGGGAAGAAGGGAAGGGTTTTTGAAGAAAATGAAAGGATTGCTTCTTCAGTTTCTACTCTCTTGGATTATCATCTACAAATTTCTGTTCCACGTACCTACTATTCTGCCATTGTTGTGTTCAAGAATGTATGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTTTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

Coding sequence (CDS)

ATGAAGGAGATAAAGGGGAAGAAGGGAAGGGTTTTTGAAGAAAATGAAAGGATTGCTTCTTCAGTTTCTACTCTCTTGGATTATCATCTACAAATTTCTGTTCCACGTACCTACTATTCTGCCATTGTTGTGTTCAAGAATGTATGTGAATTGATGGAGAGGCATCTTTTCATTGAAATTGGTCGTGTGAACTGTTTTATAAGATGTACTACTTTCAGGGTTCATGAAGCTGAATGA

Protein sequence

MKEIKGKKGRVFEENERIASSVSTLLDYHLQISVPRTYYSAIVVFKNVCELMERHLFIEIGRVNCFIRCTTFRVHEAE
Homology
[Close]
BLAST of Csor.00g159960.m01 vs. NCBI nr
Match: KAG6579726.1 (hypothetical protein SDJN03_24174, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157 bits (396), Expect = 3.62e-48
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MKEIKGKKGRVFEENERIASSVSTLLDYHLQISVPRTYYSAIVVFKNVCELMERHLFIEI 60
          MKEIKGKKGRVFEENERIASSVSTLLDYHLQISVPRTYYSAIVVFKNVCELMERHLFIEI
Sbjct: 1  MKEIKGKKGRVFEENERIASSVSTLLDYHLQISVPRTYYSAIVVFKNVCELMERHLFIEI 60

Query: 61 GRVNCFIRCTTFRVHEAE 78
          GRVNCFIRCTTFRVHEAE
Sbjct: 61 GRVNCFIRCTTFRVHEAE 78

[Close]
BLAST of Csor.00g159960.m01 vs. NCBI nr
Match: KGN61437.1 (hypothetical protein Csa_006680 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 1.30e-14
Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 27  DYHLQISVPRTYYSAIVVFKNVCELMERHLFIEIGRVNCFIRCTTFRVHEAE 78
           D  L I+  RTYYSAIVV  N  ELMERH FI+IGRVNC IRCTTFRV EAE
Sbjct: 55  DSLLLIASSRTYYSAIVVSNNEFELMERHHFIDIGRVNCLIRCTTFRVDEAE 106

[Close]
BLAST of Csor.00g159960.m01 vs. ExPASy TrEMBL
Match: A0A0A0LL18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.30e-15
Identity = 38/52 (73.08%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 27  DYHLQISVPRTYYSAIVVFKNVCELMERHLFIEIGRVNCFIRCTTFRVHEAE 78
           D  L I+  RTYYSAIVV  N  ELMERH FI+IGRVNC IRCTTFRV EAE
Sbjct: 55  DSLLLIASSRTYYSAIVVSNNEFELMERHHFIDIGRVNCLIRCTTFRVDEAE 106

The following BLAST results are available for this feature:
BLAST of Csor.00g159960.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g159960.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579726.13.62e-48100.00hypothetical protein SDJN03_24174, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN61437.11.30e-1473.08hypothetical protein Csa_006680 [Cucumis sativus][more]
BLAST of Csor.00g159960.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL186.30e-1573.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G122010 PE=4 SV=1[more]
BLAST of Csor.00g159960.m01 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g159960Csor.00g159960gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.CDS01Csor.00g159960.m01.CDS01CDS
Csor.00g159960.m01.CDS02Csor.00g159960.m01.CDS02CDS
Csor.00g159960.m01.CDS03Csor.00g159960.m01.CDS03CDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.start_codon01Csor.00g159960.m01.start_codon01start_codon


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.initial01Csor.00g159960.m01.initial01initial


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.intron01Csor.00g159960.m01.intron01intron
Csor.00g159960.m01.intron02Csor.00g159960.m01.intron02intron


The following internal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.internal01Csor.00g159960.m01.internal01internal


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.terminal01Csor.00g159960.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01.stop_codon01Csor.00g159960.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g159960.m01Csor.00g159960.m01-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane