Csor.00g122320.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGGTTAGTAATTTGATTGACTGATCTTACACAACCCAATTCTTGAATCTCATTGTGCTTTAATTCCAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCATCATTTGCTCAACTGAGAGAACTTCCCGCGTGGAAAGTAAGACTCGTAGTTTTAAGCTCTTCGGTTGATTCCAATGCTTGAGGTTTTGGTTTTGCTTGTTATGCGATGAAAATGCTCGTTTGGTAATTAATCTGATTGCTTGTTGGTGGAAATTTGTTTCAAATTTAGAGAACTGTGGAATTATATGAGATTTGTAGCTTGCATGCAAGGTGTTTGTAGAAATGTCAAAAACAAAAGGGGCTTCGAAGATATAGGTTCAAACATGGTGACAACCTATCTAGGATTTAAAATGATATGAATTTACTTAGCAATCAAATGTAGTAGAGTTTGGTAGTTGTTTTTTGAGATTAACCAAGGTGTTCGCAAATTGGCCTAGACAGACATTGATGTTTGAAAAAGAAAAAATCGATGATAACTTCTACGTGACTTCTATGGTTTTTCATAGTGGGATTGTTCTCTCAATAAGTATTTTGATTAAGTTCTTCTTGGAATTTTAGCAAAATTATGACTCATTTCTATGGTTTTTATAGTGGGAATGTTCTCCTAAAGTGGATTTTGATTTGTTCTAATTGGAACTTTTCTTTTCTTTCGCTGTTTTCTCAAGCCTAGATTTCCGTAATGACCGTAATACTCTGATGTTGAATATTAACATTAGGTCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTGCAAGTTTATTTGCTGCAAGTCCCCTATTTGCTGAAGGTATAAATTCACTTCTCTCTGATAATCTAATGTTGGATTCTAAATTAATTTCGTGGTCTGTATGCGCAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGTAAGAAAAATTCAACCAGGAGAAACATGAGATTTTTCTGTACTAAACCAAAGAATATATTAAAACAAACAATTTTGAAATGTTCCCTGTCCAGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTAAAGGAATCTTCAATTCAAATCATATTTGATATACTGGAAAGATGTCTGGATAATTAACTCAACTCGACTCAAGCAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGGTTTGCATCTTTATCAGTCTCTCCAAATCCATATTTCTATATAGTATTATCTTGAGGTCTGTTTATGGACATCTGGTTGATCTTTTATTTACCTGTTTCAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAAGCTCATATTTTGTACCTTAAGAATTTTGGACCCTTCCATATTTTGATTTATCAGCTCTAAATCCCCTGCTTGTTGACCTAGGATACTTTTTTACCCAAGAGATGTTTGGAAAAAATTTCATTCCAACAGAATCAAGGTTAACCAAACTCATTTGATCGAGTTGTATTCTGCAATCTTAAACTAGTTCATAACTACCCTATATTTTGTGAGTTGAATACAATTTGATTCGTGTTGAAGTCCCCGATCTTGAGCTGAATTAAACCTGTATTTATTCCCTTGCACTTGTATATTCTGTTGAGTTAATAGAAGCATTGCAAGTTTTTTTCACATGGGAGAATTCAAATCTCTAATCGTTTAGTCGATGATATATGTCTTAACTGATTGCTATCCTCAGGTTCGGGTTAAAACAACCCTTTTTTGTAATATGCAGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGA ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCATCATTTGCTCAACTGAGAGAACTTCCCGCGTGGAAAGTCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTGCAAGTTTATTTGCTGCAAGTCCCCTATTTGCTGAAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGA ATGGCAGTTTCAACCTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCATCATTTGCTCAACTGAGAGAACTTCCCGCGTGGAAAGTCATTGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCTGCAAGTTTATTTGCTGCAAGTCCCCTATTTGCTGAAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGA MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPLLLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYTFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI Homology
BLAST of Csor.00g122320.m01 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2) HSP 1 Score: 265.4 bits (677), Expect = 6.2e-70 Identity = 144/237 (60.76%), Postives = 170/237 (71.73%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.9e-34 Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy Swiss-Prot
Match: P11594 (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba OX=3728 GN=PSBP PE=2 SV=2) HSP 1 Score: 53.1 bits (126), Expect = 4.8e-06 Identity = 59/240 (24.58%), Postives = 97/240 (40.42%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 8.2e-06 Identity = 46/190 (24.21%), Postives = 79/190 (41.58%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy Swiss-Prot
Match: Q42029 (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBP1 PE=1 SV=2) HSP 1 Score: 50.1 bits (118), Expect = 4.1e-05 Identity = 58/232 (25.00%), Postives = 92/232 (39.66%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. NCBI nr
Match: XP_022953447.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita moschata] >KAG6602355.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033035.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 479 bits (1233), Expect = 1.13e-170 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. NCBI nr
Match: XP_023534746.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 473 bits (1217), Expect = 3.12e-168 Identity = 232/236 (98.31%), Postives = 234/236 (99.15%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. NCBI nr
Match: XP_022953456.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita moschata]) HSP 1 Score: 472 bits (1215), Expect = 6.08e-168 Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. NCBI nr
Match: XP_022990449.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita maxima]) HSP 1 Score: 472 bits (1215), Expect = 6.30e-168 Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. NCBI nr
Match: XP_023534754.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 466 bits (1199), Expect = 1.67e-165 Identity = 231/236 (97.88%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy TrEMBL
Match: A0A6J1GN93 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1) HSP 1 Score: 479 bits (1233), Expect = 5.49e-171 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy TrEMBL
Match: A0A6J1GN22 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1) HSP 1 Score: 472 bits (1215), Expect = 2.94e-168 Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy TrEMBL
Match: A0A6J1JS28 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1) HSP 1 Score: 472 bits (1215), Expect = 3.05e-168 Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy TrEMBL
Match: A0A6J1JMZ7 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1) HSP 1 Score: 465 bits (1197), Expect = 1.63e-165 Identity = 231/236 (97.88%), Postives = 232/236 (98.31%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. ExPASy TrEMBL
Match: A0A1S3CKZ3 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501649 PE=4 SV=1) HSP 1 Score: 427 bits (1099), Expect = 1.47e-150 Identity = 211/236 (89.41%), Postives = 221/236 (93.64%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 ) HSP 1 Score: 265.8 bits (678), Expect = 3.4e-71 Identity = 128/180 (71.11%), Postives = 147/180 (81.67%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 ) HSP 1 Score: 265.4 bits (677), Expect = 4.4e-71 Identity = 144/237 (60.76%), Postives = 170/237 (71.73%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 ) HSP 1 Score: 177.2 bits (448), Expect = 1.6e-44 Identity = 85/114 (74.56%), Postives = 95/114 (83.33%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 ) HSP 1 Score: 147.5 bits (371), Expect = 1.3e-35 Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 0
BLAST of Csor.00g122320.m01 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein ) HSP 1 Score: 52.4 bits (124), Expect = 5.9e-07 Identity = 46/190 (24.21%), Postives = 79/190 (41.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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