Csor.00g117840.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g117840.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr12: 4931401 .. 4931778 (+)
Sequence length378
RNA-Seq ExpressionCsor.00g117840.m01
SyntenyCsor.00g117840.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGATTCCTATCAAGATGTGAAAATTTTGGTTTTGGTTCAATCATAGCATCGTTGGTCACCGCCGTTGAGCTCTCGACGACGTGGCATCGAACCGAATCAACAAAAACAAGAAAGAAAATCACAATATCCTCAGAGACCCGTTTCAAATCAACCACACAGGAGAATCACGAAAAACGGCTGAGAATTCCCAAGCAGAGCAGCAAAATGATCCAACAACCCGACCACTCCACGGTAGAAATGAATCGGCGTCGGGGTTCACTGCCTGATGGGAGACAACAGGCGTATCCACGGCTTCTCGCTGCGGTTTGGAGTGTCATACGGCACTTCCTATCAATTTTGGGAGTGCTTCTTCATTGGAATATTCACAGATGA

mRNA sequence

ATGAACAGATTCCTATCAAGATGTGAAAATTTTGGTTTTGGTTCAATCATAGCATCGTTGGTCACCGCCGTTGAGCTCTCGACGACGTGGCATCGAACCGAATCAACAAAAACAAGAAAGAAAATCACAATATCCTCAGAGACCCGTTTCAAATCAACCACACAGGAGAATCACGAAAAACGGCTGAGAATTCCCAAGCAGAGCAGCAAAATGATCCAACAACCCGACCACTCCACGGTAGAAATGAATCGGCGTCGGGGTTCACTGCCTGATGGGAGACAACAGGCGTATCCACGGCTTCTCGCTGCGGTTTGGAGTGTCATACGGCACTTCCTATCAATTTTGGGAGTGCTTCTTCATTGGAATATTCACAGATGA

Coding sequence (CDS)

ATGAACAGATTCCTATCAAGATGTGAAAATTTTGGTTTTGGTTCAATCATAGCATCGTTGGTCACCGCCGTTGAGCTCTCGACGACGTGGCATCGAACCGAATCAACAAAAACAAGAAAGAAAATCACAATATCCTCAGAGACCCGTTTCAAATCAACCACACAGGAGAATCACGAAAAACGGCTGAGAATTCCCAAGCAGAGCAGCAAAATGATCCAACAACCCGACCACTCCACGGTAGAAATGAATCGGCGTCGGGGTTCACTGCCTGATGGGAGACAACAGGCGTATCCACGGCTTCTCGCTGCGGTTTGGAGTGTCATACGGCACTTCCTATCAATTTTGGGAGTGCTTCTTCATTGGAATATTCACAGATGA

Protein sequence

MNRFLSRCENFGFGSIIASLVTAVELSTTWHRTESTKTRKKITISSETRFKSTTQENHEKRLRIPKQSSKMIQQPDHSTVEMNRRRGSLPDGRQQAYPRLLAAVWSVIRHFLSILGVLLHWNIHR
Homology
[Close]
BLAST of Csor.00g117840.m01 vs. NCBI nr
Match: KAG6585876.1 (hypothetical protein SDJN03_18609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 2.60e-81
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MNRFLSRCENFGFGSIIASLVTAVELSTTWHRTESTKTRKKITISSETRFKSTTQENHEK 60
           MNRFLSRCENFGFGSIIASLVTAVELSTTWHRTESTKTRKKITISSETRFKSTTQENHEK
Sbjct: 1   MNRFLSRCENFGFGSIIASLVTAVELSTTWHRTESTKTRKKITISSETRFKSTTQENHEK 60

Query: 61  RLRIPKQSSKMIQQPDHSTVEMNRRRGSLPDGRQQAYPRLLAAVWSVIRHFLSILGVLLH 120
           RLRIPKQSSKMIQQPDHSTVEMNRRRGSLPDGRQQAYPRLLAAVWSVIRHFLSILGVLLH
Sbjct: 61  RLRIPKQSSKMIQQPDHSTVEMNRRRGSLPDGRQQAYPRLLAAVWSVIRHFLSILGVLLH 120

Query: 121 WNIHR 125
           WNIHR
Sbjct: 121 WNIHR 125

The following BLAST results are available for this feature:
BLAST of Csor.00g117840.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g117840.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6585876.12.60e-81100.00hypothetical protein SDJN03_18609, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g117840.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g117840.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..92

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g117840Csor.00g117840gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g117840.m01.CDS01Csor.00g117840.m01.CDS01CDS


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g117840.m01.single01Csor.00g117840.m01.single01single


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g117840.m01.start_codon01Csor.00g117840.m01.start_codon01start_codon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g117840.m01.stop_codon01Csor.00g117840.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g117840.m01Csor.00g117840.m01-proteinpolypeptide