Csor.00g114550.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g114550.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr07: 1289290 .. 1289742 (+)
Sequence length453
RNA-Seq ExpressionCsor.00g114550.m01
SyntenyCsor.00g114550.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTCTAAACTACTCGAAGTCAATATTAGAACCAGACAGAATTCTGGACGATCACGTTACCAATCAAATCGATGCATTCACGGGGCTGAAACACAAACTCCTTCCCCACCAAAGCTCCGCTGCTTCCAAAGCACCACAATCCACCACGGTCCTCAACGAGAGCTTTGATCCTAATCTTTGGACCATCCATGGAGAATCCCATAACCTCTTTCTCAATGGCCAGAGATCGTTGGCCTTTCTCCGACCACCGAAGCCAACCGTCAGCTGTGAGAATCAATGGCGTGACGATTCCGTCGTCAAGGAGGAGACGGTGGTTAAGGACAGGCTCTGTGATCCATTTTTCAGAAGAGAATGGAATAGTAACAATCCACTGGACTCCGGTTTCTTATCTGAATATGGCGGGTTTGTGTTGGTGGTGGTCGGCGGGAAAAGAAACGTGGCCGTTTAG

mRNA sequence

ATGCATTTTCTAAACTACTCGAAGTCAATATTAGAACCAGACAGAATTCTGGACGATCACGTTACCAATCAAATCGATGCATTCACGGGGCTGAAACACAAACTCCTTCCCCACCAAAGCTCCGCTGCTTCCAAAGCACCACAATCCACCACGGTCCTCAACGAGAGCTTTGATCCTAATCTTTGGACCATCCATGGAGAATCCCATAACCTCTTTCTCAATGGCCAGAGATCGTTGGCCTTTCTCCGACCACCGAAGCCAACCGTCAGCTGTGAGAATCAATGGCGTGACGATTCCGTCGTCAAGGAGGAGACGGTGGTTAAGGACAGGCTCTGTGATCCATTTTTCAGAAGAGAATGGAATAGTAACAATCCACTGGACTCCGGTTTCTTATCTGAATATGGCGGGTTTGTGTTGGTGGTGGTCGGCGGGAAAAGAAACGTGGCCGTTTAG

Coding sequence (CDS)

ATGCATTTTCTAAACTACTCGAAGTCAATATTAGAACCAGACAGAATTCTGGACGATCACGTTACCAATCAAATCGATGCATTCACGGGGCTGAAACACAAACTCCTTCCCCACCAAAGCTCCGCTGCTTCCAAAGCACCACAATCCACCACGGTCCTCAACGAGAGCTTTGATCCTAATCTTTGGACCATCCATGGAGAATCCCATAACCTCTTTCTCAATGGCCAGAGATCGTTGGCCTTTCTCCGACCACCGAAGCCAACCGTCAGCTGTGAGAATCAATGGCGTGACGATTCCGTCGTCAAGGAGGAGACGGTGGTTAAGGACAGGCTCTGTGATCCATTTTTCAGAAGAGAATGGAATAGTAACAATCCACTGGACTCCGGTTTCTTATCTGAATATGGCGGGTTTGTGTTGGTGGTGGTCGGCGGGAAAAGAAACGTGGCCGTTTAG

Protein sequence

MHFLNYSKSILEPDRILDDHVTNQIDAFTGLKHKLLPHQSSAASKAPQSTTVLNESFDPNLWTIHGESHNLFLNGQRSLAFLRPPKPTVSCENQWRDDSVVKEETVVKDRLCDPFFRREWNSNNPLDSGFLSEYGGFVLVVVGGKRNVAV
Homology
[Close]
BLAST of Csor.00g114550.m01 vs. NCBI nr
Match: KAG6594627.1 (hypothetical protein SDJN03_11180, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315 bits (806), Expect = 2.06e-108
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MHFLNYSKSILEPDRILDDHVTNQIDAFTGLKHKLLPHQSSAASKAPQSTTVLNESFDPN 60
           MHFLNYSKSILEPDRILDDHVTNQIDAFTGLKHKLLPHQSSAASKAPQSTTVLNESFDPN
Sbjct: 1   MHFLNYSKSILEPDRILDDHVTNQIDAFTGLKHKLLPHQSSAASKAPQSTTVLNESFDPN 60

Query: 61  LWTIHGESHNLFLNGQRSLAFLRPPKPTVSCENQWRDDSVVKEETVVKDRLCDPFFRREW 120
           LWTIHGESHNLFLNGQRSLAFLRPPKPTVSCENQWRDDSVVKEETVVKDRLCDPFFRREW
Sbjct: 61  LWTIHGESHNLFLNGQRSLAFLRPPKPTVSCENQWRDDSVVKEETVVKDRLCDPFFRREW 120

Query: 121 NSNNPLDSGFLSEYGGFVLVVVGGKRNVAV 150
           NSNNPLDSGFLSEYGGFVLVVVGGKRNVAV
Sbjct: 121 NSNNPLDSGFLSEYGGFVLVVVGGKRNVAV 150

The following BLAST results are available for this feature:
BLAST of Csor.00g114550.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g114550.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594627.12.06e-108100.00hypothetical protein SDJN03_11180, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g114550.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g114550.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g114550Csor.00g114550gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g114550.m01.CDS01Csor.00g114550.m01.CDS01CDS


The following single feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g114550.m01.single01Csor.00g114550.m01.single01single


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g114550.m01.start_codon01Csor.00g114550.m01.start_codon01start_codon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g114550.m01.stop_codon01Csor.00g114550.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g114550.m01Csor.00g114550.m01-proteinpolypeptide