Csor.00g103540.m01 (mRNA) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTACGCTACCTACTCCTCTCGACTTCGACACCGACGATTACCAATTCCCGCTTCCCGGGTTCCGCTTCCACCCCACCGACGAAGAGCTCGTCGATTACTACCTCCGTCGGAAGGTCGAGAAGAAGTCCATTGCCCTCGAACTCATCAAACAAATCGATATCTATCGACACAACCCTTGGGATCTTCCTTGTAAGTTGCTTAAATTCAGTGGTTTATGTTATGATATACTAAGAGAGTTGAGGTGATTTATAAGGGTTTGTTTTGCAGATGGAAGTGGGGCGGCGGGGGAGAAAGAGTGCTATGTGTTTGTGAAAAGAGGAAGGAAGTACAAGAACAGTGTTAGACCCAATAGGGTAACGGGGGCGGGGTTTTGGAAGGCCACTGGTATTGATAAGCCAATTTATTCACAAGGTGGGGAACCTAACCGCTGCATTGGCTTGAAGAAAACCCTTGTTTTCTACAAGGGAAGTGCTGGGAGAGGGCTTAAAACTGAATGGATGATGCATGAGTTTCGCCTCCCTCCAAATACGTCTTCCAATTCCCACGATTCTGACGCAGCGGTAAACAAACCACGACTCTCTATAATCATATGATATTGTCTACTTCGAGTATAAGCTCAAAGGGCTCGTACTAATAGAGATGTATTTTTTACTTATAAACTCATAATCAACAACAACTCCTTAATTAGCCGATGTGGGACTCCTCTCCTAACCATCCTTAACAATCCTCTCCTCAAACTACACTATAGAGCCTCCTCTGAGGCCTATGGAGCCCTCCAACAACCTCCCCTTAATCGAGGTTCTCGAATCCTTCTTTTTTGAGTCCTCGAACAAAGTCTCGACACTTTACTCACTTTTAACTACACATTCGAGGCTCACCTCTCCTCGAACAAAGTACACCATAGAGAGACCTATGGAACCCTTTAACAGCCTCCCTTAATCGAGGCTCGACTCCTTCTTTTTTGAGCCTTCAAACAAAAACTCAACACTTTAGTCACTTTTGACTACACATTCAAGATTCATAATTTCTTTATTCAACATTTGAGGATTCTATTGACATGATTATGATACTATGTTAGGAACCACGAACCCTACAATAACATGAAATTCTCTCCTAATGATTCCCATGAATCTGATTCTTTATGTTTTAACGTTACAGGAGATTTGGACGTTATGTCGGATATTCAAACGGAATATCGTATGTAGAAGATACACACCAAATTGGAAAGAAATTCCGGCGAGCAACCGGGAAAGGAAGAGCGCCAAAACAGTGGATCATCAAGCTTATGATGATGGAGATGGAAGAGAAACTTACATAAGTTTTAGCTCGAACCCGTTTAATGGGTTTGAAGAGAAGAAGCCATTCTTGGTTTGTGATGAAAGAAAACAATGGGAGGAGCTGACGATGATGATGATGAAGAAGAAGAACAGTGAAGCAGCTGAAGTGATATCTGTGTCGCCTCCTTTGTCTGTAAACCAGTCTCCAGCTTCATCGGGGTTCGATGAGGATGACTGGGATGAACTTAGATCCATCGTGGACTTCGCTTTTGATCCTTTTTTTAACAACCCTTCGTTTTAA ATGGCTACGCTACCTACTCCTCTCGACTTCGACACCGACGATTACCAATTCCCGCTTCCCGGGTTCCGCTTCCACCCCACCGACGAAGAGCTCGTCGATTACTACCTCCGTCGGAAGGTCGAGAAGAAGTCCATTGCCCTCGAACTCATCAAACAAATCGATATCTATCGACACAACCCTTGGGATCTTCCTTATGGAAGTGGGGCGGCGGGGGAGAAAGAGTGCTATGTGTTTGTGAAAAGAGGAAGGAAGTACAAGAACAGTGTTAGACCCAATAGGGAGATTTGGACGTTATGTCGGATATTCAAACGGAATATCGTATGTAGAAGATACACACCAAATTGGAAAGAAATTCCGGCGAGCAACCGGGAAAGGAAGAGCGCCAAAACAGTGGATCATCAAGCTTATGATGATGGAGATGGAAGAGAAACTTACATAAGTTTTAGCTCGAACCCGTTTAATGGGTTTGAAGAGAAGAAGCCATTCTTGGTTTGTGATGAAAGAAAACAATGGGAGGAGCTGACGATGATGATGATGAAGAAGAAGAACAGTGAAGCAGCTGAAGTGATATCTGTGTCGCCTCCTTTGTCTGTAAACCAGTCTCCAGCTTCATCGGGGTTCGATGAGGATGACTGGGATGAACTTAGATCCATCGTGGACTTCGCTTTTGATCCTTTTTTTAACAACCCTTCGTTTTAA ATGGCTACGCTACCTACTCCTCTCGACTTCGACACCGACGATTACCAATTCCCGCTTCCCGGGTTCCGCTTCCACCCCACCGACGAAGAGCTCGTCGATTACTACCTCCGTCGGAAGGTCGAGAAGAAGTCCATTGCCCTCGAACTCATCAAACAAATCGATATCTATCGACACAACCCTTGGGATCTTCCTTATGGAAGTGGGGCGGCGGGGGAGAAAGAGTGCTATGTGTTTGTGAAAAGAGGAAGGAAGTACAAGAACAGTGTTAGACCCAATAGGGAGATTTGGACGTTATGTCGGATATTCAAACGGAATATCGTATGTAGAAGATACACACCAAATTGGAAAGAAATTCCGGCGAGCAACCGGGAAAGGAAGAGCGCCAAAACAGTGGATCATCAAGCTTATGATGATGGAGATGGAAGAGAAACTTACATAAGTTTTAGCTCGAACCCGTTTAATGGGTTTGAAGAGAAGAAGCCATTCTTGGTTTGTGATGAAAGAAAACAATGGGAGGAGCTGACGATGATGATGATGAAGAAGAAGAACAGTGAAGCAGCTGAAGTGATATCTGTGTCGCCTCCTTTGTCTGTAAACCAGTCTCCAGCTTCATCGGGGTTCGATGAGGATGACTGGGATGAACTTAGATCCATCGTGGACTTCGCTTTTGATCCTTTTTTTAACAACCCTTCGTTTTAA MATLPTPLDFDTDDYQFPLPGFRFHPTDEELVDYYLRRKVEKKSIALELIKQIDIYRHNPWDLPYGSGAAGEKECYVFVKRGRKYKNSVRPNREIWTLCRIFKRNIVCRRYTPNWKEIPASNRERKSAKTVDHQAYDDGDGRETYISFSSNPFNGFEEKKPFLVCDERKQWEELTMMMMKKKNSEAAEVISVSPPLSVNQSPASSGFDEDDWDELRSIVDFAFDPFFNNPSF Homology
BLAST of Csor.00g103540.m01 vs. ExPASy Swiss-Prot
Match: Q9SK55 (Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana OX=3702 GN=JUB1 PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.9e-27 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy Swiss-Prot
Match: Q9FIW5 (Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana OX=3702 GN=ANAC094 PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 4.7e-22 Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy Swiss-Prot
Match: Q9ZVH0 (Protein FEZ OS=Arabidopsis thaliana OX=3702 GN=FEZ PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy Swiss-Prot
Match: Q9ZVP8 (NAC domain-containing protein 35 OS=Arabidopsis thaliana OX=3702 GN=NAC035 PE=1 SV=2) HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21 Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy Swiss-Prot
Match: Q39013 (NAC domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAC002 PE=1 SV=2) HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18 Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. NCBI nr
Match: KAG6570583.1 (Transcription factor JUNGBRUNNEN 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 486 bits (1250), Expect = 2.13e-173 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. NCBI nr
Match: XP_022943620.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita moschata]) HSP 1 Score: 453 bits (1166), Expect = 1.66e-159 Identity = 231/301 (76.74%), Postives = 231/301 (76.74%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. NCBI nr
Match: XP_023512276.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 451 bits (1161), Expect = 9.59e-159 Identity = 230/301 (76.41%), Postives = 230/301 (76.41%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. NCBI nr
Match: XP_022986012.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita maxima]) HSP 1 Score: 422 bits (1084), Expect = 4.61e-147 Identity = 218/300 (72.67%), Postives = 221/300 (73.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. NCBI nr
Match: XP_038902596.1 (transcription factor JUNGBRUNNEN 1-like [Benincasa hispida]) HSP 1 Score: 317 bits (813), Expect = 1.42e-105 Identity = 192/324 (59.26%), Postives = 200/324 (61.73%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy TrEMBL
Match: A0A6J1FY15 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448332 PE=4 SV=1) HSP 1 Score: 453 bits (1166), Expect = 8.04e-160 Identity = 231/301 (76.74%), Postives = 231/301 (76.74%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy TrEMBL
Match: A0A6J1J6F3 (transcription factor JUNGBRUNNEN 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483873 PE=4 SV=1) HSP 1 Score: 422 bits (1084), Expect = 2.23e-147 Identity = 218/300 (72.67%), Postives = 221/300 (73.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy TrEMBL
Match: A0A5D3C9J7 (Transcription factor JUNGBRUNNEN 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00760 PE=4 SV=1) HSP 1 Score: 317 bits (812), Expect = 1.23e-105 Identity = 186/326 (57.06%), Postives = 197/326 (60.43%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy TrEMBL
Match: A0A0A0KEH5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139170 PE=4 SV=1) HSP 1 Score: 310 bits (795), Expect = 4.52e-103 Identity = 184/324 (56.79%), Postives = 195/324 (60.19%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. ExPASy TrEMBL
Match: A0A6J1D8T7 (transcription factor JUNGBRUNNEN 1-like OS=Momordica charantia OX=3673 GN=LOC111018095 PE=4 SV=1) HSP 1 Score: 277 bits (709), Expect = 7.53e-90 Identity = 175/337 (51.93%), Postives = 191/337 (56.68%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. TAIR 10
Match: AT2G43000.1 (NAC domain containing protein 42 ) HSP 1 Score: 123.6 bits (309), Expect = 2.0e-28 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. TAIR 10
Match: AT3G12910.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein ) HSP 1 Score: 114.4 bits (285), Expect = 1.2e-25 Identity = 90/295 (30.51%), Postives = 117/295 (39.66%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. TAIR 10
Match: AT5G39820.1 (NAC domain containing protein 94 ) HSP 1 Score: 106.3 bits (264), Expect = 3.4e-23 Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. TAIR 10
Match: AT1G26870.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein ) HSP 1 Score: 104.8 bits (260), Expect = 9.8e-23 Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 0
BLAST of Csor.00g103540.m01 vs. TAIR 10
Match: AT2G02450.1 (NAC domain containing protein 35 ) HSP 1 Score: 104.8 bits (260), Expect = 9.8e-23 Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following terminal feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following internal feature(s) are a part of this mRNA:
The following initial feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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