Csor.00g094380.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g094380.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Reticulon-like protein
Location	Csor_Chr14: 439757 .. 441773 (+)
Sequence length	747
RNA-Seq Expression	Csor.00g094380.m01
Synteny	Csor.00g094380.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCTCCGGATCCTTGTTGAGCTTGAGGTTAGCTAGTTGAAGTCGAATCCATGTTTTACAGTCGTTCTGTGCAGTGTAACTATATTCACTTACTTTTTTCAATTTTCAGATTGATACTGTATAAACTCTTCAAAAAAAATAAGCCGTCGACTTGGCCTCTGAATTGTCACAAATGTTGGATTACAGAGATGTATTCGTCTTTGAAAACATTTTTAAACCTCCACAAGTATCCCCCGTTACTCATGTTCAAATCAAAACATGTTATAAACTGAAACTTGTGTGTTAAGATAAGAATAACCCCACTCGAATCTGATGATCTGAATTAATCAAGTGCTTCCAGAGTTGGTTGGTAACTCAATCAAAATACATTTTTTATTAGGTTAGGCCGGCTCTATCATTCAACTAAATATATAATAAATTCACTATGCAAACAATTAGGTTGCAGCTATAAAAGAAGCTCAACATGGGTCTGTCAGAGGTCAATACAAAGAGTATTATCGTCTTCCTCTGTCTTTGTAAGCAGTAAAAAGGACATAAGTTTCATACCGTTTCCGGTGGGCAGGTGAATGATGGAGAAGGAGAATAAAAGGCCACGAGGGGGCATGACGCTTTTGACCTGTCAGTTGGCCCAATTCCCATTTCTTACCATTTCAACTAGTCTGCCCTCAGGACTCTCAGGAAACTCAAAAGGGTAACAGAGAGTAGACAACAAAAAAAGCTATACAGAACTCCTGTTTTCCCTTTTCTACTGGCTCCTGCTTCCGAGCTCTCTGTTTCTTTAGGGTATTTTCAAAGCTCAACTGGGATCAACATCCTTTCTTTTCAGTTCTTTTGATGGGTTCCTCCGATCGTTTGTTTTGTAGGCAGCGAACTCTTCACGAAATTGTTGGCGGCGGTATTGGTACGACTAGATTTTCTGATTTCTGGGTTGTTTTATTTTCATGGATCCTCTTTGAATTCCTATCCGATAACTCTGTATCGGTCTTCTTTTGAGTGAGATGTCGAATTTCGAAGCATTGATTGTTTCCGAAAATTTTCATCGATGAACTGTTCTCTTCTTTTCTGCATCGCTAGTGCAATGTATTCTTGAATTGCTGAAAATTTTCTGTGGATTCTGCTTGTCACTGCAGCTGATAGAGTTGTAGGATGCTTACTCCTCAAAGCTAATTAAGATTGCGTTTGCGATCCAACAAACATAACAATGAATGGGTTTAACTCTTGGTTTTTTTAATCTGTTCAGTTGCAGATGTAATTCTTTGGAGGCGGAAGGATCTAACTCTGTGGATTCTGTCAATTACGGTGGCGACTTGGGTGGTGTTTGAGAGATGTGGTTACACCCTTTTGTCTTTAATTTCCAGTGTTCTACTTCTTCTTGTTACCATTATCTTTCTCTGGGCCAAATCGGCGTCCATTCTCAACAGGTAAACTATTCGGAGATTGCCTCTTTAACTATTTCTGGGCCAAATCTGTGGATTCCTTGTTTCCAGGCTAATCAAATCTTCTAAGTACTTCGATTAAGGTTACTTCTGAATCTGCTACCTTTCTCAACAGACCCGCGCCGCCTCTTCCTGAGTTGCATCTCTCAGAAGATATGGTGAACGAAGCTGCATCTTTCATTCGCTCCCATGTGAATGATTTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAAACCCCAGATTGTTCTTCAAAGTAGCTGCTTGCCTGTGGGTGATTTCAGTTATCAGTGGCTTGACTGATCTTATCACTTTATGTTACACCAGTAAGTTTCAGTCTTCAGTTTCCATAATTGTGTGTGTAGATTGATAGATTTCATGGCCATTTTTTGCTCTCAATGACAGGCCTTTTACTCGTGCTGACAATCCCTGCATTGTATGAGAAGTATGAAGATTACGTAGATAGGCAGGTCGTATTGATGTACAGAAAATTGCATCAGTTTTATGTGAAATTGGATGAGAAGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAGCTGAGCTGA

mRNA sequence

ATGGGAACCTCCGGATCCTTGTTGAGCTTGAGGACTCTCAGGAAACTCAAAAGGGTAACAGAGAGTAGACAACAAAAAAAGCTATACAGAACTCCTGTTTTCCCTTTTCTACTGGCTCCTGCTTCCGAGCTCTCTGTTTCTTTAGGGCAGCGAACTCTTCACGAAATTGTTGGCGGCGGTATTGTTGCAGATGTAATTCTTTGGAGGCGGAAGGATCTAACTCTGTGGATTCTGTCAATTACGGTGGCGACTTGGGTGGTGTTTGAGAGATGTGGTTACACCCTTTTGTCTTTAATTTCCAGTGTTCTACTTCTTCTTGTTACCATTATCTTTCTCTGGGCCAAATCGGCGTCCATTCTCAACAGACCCGCGCCGCCTCTTCCTGAGTTGCATCTCTCAGAAGATATGGTGAACGAAGCTGCATCTTTCATTCGCTCCCATGTGAATGATTTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAAACCCCAGATTGTTCTTCAAAGTAGCTGCTTGCCTGTGGGTGATTTCAGTTATCAGTGGCTTGACTGATCTTATCACTTTATGTTACACCAGCCTTTTACTCGTGCTGACAATCCCTGCATTGTATGAGAAGTATGAAGATTACGTAGATAGGCAGGTCGTATTGATGTACAGAAAATTGCATCAGTTTTATGTGAAATTGGATGAGAAGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAGCTGAGCTGA

Coding sequence (CDS)

ATGGGAACCTCCGGATCCTTGTTGAGCTTGAGGACTCTCAGGAAACTCAAAAGGGTAACAGAGAGTAGACAACAAAAAAAGCTATACAGAACTCCTGTTTTCCCTTTTCTACTGGCTCCTGCTTCCGAGCTCTCTGTTTCTTTAGGGCAGCGAACTCTTCACGAAATTGTTGGCGGCGGTATTGTTGCAGATGTAATTCTTTGGAGGCGGAAGGATCTAACTCTGTGGATTCTGTCAATTACGGTGGCGACTTGGGTGGTGTTTGAGAGATGTGGTTACACCCTTTTGTCTTTAATTTCCAGTGTTCTACTTCTTCTTGTTACCATTATCTTTCTCTGGGCCAAATCGGCGTCCATTCTCAACAGACCCGCGCCGCCTCTTCCTGAGTTGCATCTCTCAGAAGATATGGTGAACGAAGCTGCATCTTTCATTCGCTCCCATGTGAATGATTTTCTGTCTGTTTCACAAGATATAGCCATGGGAAAAAACCCCAGATTGTTCTTCAAAGTAGCTGCTTGCCTGTGGGTGATTTCAGTTATCAGTGGCTTGACTGATCTTATCACTTTATGTTACACCAGCCTTTTACTCGTGCTGACAATCCCTGCATTGTATGAGAAGTATGAAGATTACGTAGATAGGCAGGTCGTATTGATGTACAGAAAATTGCATCAGTTTTATGTGAAATTGGATGAGAAGCGAGTTCTGACATACCAACAATGGATTTTGGAGAAAGAAAAGCTGAGCTGA

Protein sequence

MGTSGSLLSLRTLRKLKRVTESRQQKKLYRTPVFPFLLAPASELSVSLGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS

Homology

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BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot
Match: Q9M392 (Reticulon-like protein B12 OS=Arabidopsis thaliana OX=3702 GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.4e-50
Identity = 97/180 (53.89%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 51  RTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTII 110
           RT+HEI+GGGIVADV+LWR+K++++ I+++T+A+W+VFE   YT+ +LISSVLLLL++I+
Sbjct: 13  RTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSIL 72

Query: 111 FLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKV 170
           FLW+KSASILNRP+PPLPE  +SE M  EA+ ++R HVN  L VS DIAM ++  L+ KV
Sbjct: 73  FLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKV 132

Query: 171 AACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLD 230
           A  L+++S+I  L D  TLC+TS+L+V+T+PA YE+YEDY+   +  +  K  + Y++L+
Sbjct: 133 AVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELYLRLE 192

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot
Match: Q9LT71 (Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.8e-35
Identity = 77/172 (44.77%), Postives = 115/172 (66.86%), Query Frame = 0


Query: 45  SVSLGQR-TLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVL 104
           SVS   R ++H+ +G G VAD++LWR +   + +L  +   W +FER GY LLS +S+VL
Sbjct: 4   SVSSSSRVSVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVL 63

Query: 105 LLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKN 164
           LLLV I FLWAKSA++LNRP PP+P + + E+  N+AA  +R  +N  LS++ DI + +N
Sbjct: 64  LLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARN 123

Query: 165 PRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQV 216
           P    +V+  LW IS +  L + +TL Y  +LL L+ P +YEKY+D++D +V
Sbjct: 124 PIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKV 175

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot
Match: Q8GYH6 (Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.8e-35
Identity = 82/197 (41.62%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           Q T+H+ +GGG  AD++LWRR+ L+L ++ I+   W++FE  G   LS+ S VLL+++ I
Sbjct: 29  QITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMI 88

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
            F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +G + RLFFK
Sbjct: 89  SFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFK 148

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           V  CLW++S I     L TL Y   +L +TIPALY KY+  VD+    ++R+L   Y K+
Sbjct: 149 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHY-KI 208

Query: 230 DEKRVLTYQQWILEKEK 247
            ++ V++   W L K+K
Sbjct: 209 VDENVISRLSWSLSKDK 224

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BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot
Match: Q6NPD8 (Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-31
Identity = 67/183 (36.61%), Postives = 113/183 (61.75%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           + ++H+ +  G VAD+I+W+ +     +L  T   W +FE+CGY+    + +  LL V I
Sbjct: 2   EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           +FLWAKSA + NRP P LP L ++E+ V   A  IR  +N  L+V+++I +G+N +  F+
Sbjct: 62  LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           V+  LW +S +    + +T+ Y  ++L L IP LYE+Y+D +D ++ L +R +   Y K+
Sbjct: 122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKI 181

Query: 230 DEK 233
           DE+
Sbjct: 182 DER 184

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BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot
Match: Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-29
Identity = 67/183 (36.61%), Postives = 113/183 (61.75%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           ++ +H+++GGG  AD+ LWR K ++  +L    A+WV+FE   Y LL+ +    +  +  
Sbjct: 56  EKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAA 115

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           +FLW+ + + +++  P +PE+H+ ED + +  S +R  +N  L++ ++IA GK+ + F  
Sbjct: 116 LFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFIL 175

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           V A LWV+S+I    + +TL YT+ +L+ TIP LYEKYED VD       R++ + Y  L
Sbjct: 176 VIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVL 235

Query: 230 DEK 233
           DEK
Sbjct: 236 DEK 238

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BLAST of Csor.00g094380.m01 vs. NCBI nr
Match: KAG6580494.1 (Reticulon-like protein B12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 474 bits (1219), Expect = 3.90e-168
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MGTSGSLLSLRTLRKLKRVTESRQQKKLYRTPVFPFLLAPASELSVSLGQRTLHEIVGGG 60
           MGTSGSLLSLRTLRKLKRVTESRQQKKLYRTPVFPFLLAPASELSVSLGQRTLHEIVGGG
Sbjct: 1   MGTSGSLLSLRTLRKLKRVTESRQQKKLYRTPVFPFLLAPASELSVSLGQRTLHEIVGGG 60

Query: 61  IVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTIIFLWAKSASIL 120
           IVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTIIFLWAKSASIL
Sbjct: 61  IVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTIIFLWAKSASIL 120

Query: 121 NRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKVAACLWVISVI 180
           NRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKVAACLWVISVI
Sbjct: 121 NRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKVAACLWVISVI 180

Query: 181 SGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLDEKRVLTYQQW 240
           SGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLDEKRVLTYQQW
Sbjct: 181 SGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLDEKRVLTYQQW 240

Query: 241 ILEKEKLS 248
           ILEKEKLS
Sbjct: 241 ILEKEKLS 248

[Close]

BLAST of Csor.00g094380.m01 vs. NCBI nr
Match: XP_022934139.1 (reticulon-like protein B12 isoform X1 [Cucurbita moschata])

HSP 1 Score: 389 bits (998), Expect = 1.44e-134
Identity = 205/219 (93.61%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 34  FPFLLA----PASELSVSLGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 93
           FPFL      P+     S GQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE
Sbjct: 23  FPFLTISTSLPSGLSENSKGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 82

Query: 94  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 153
           RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN
Sbjct: 83  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 142

Query: 154 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 213
           DFLSVSQDIAMGKNPRLFFKVAACLW+ISVISGLTDLITLCYTSLLLVLTIPALYEKYED
Sbjct: 143 DFLSVSQDIAMGKNPRLFFKVAACLWLISVISGLTDLITLCYTSLLLVLTIPALYEKYED 202

Query: 214 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 248
           YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS
Sbjct: 203 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 241

[Close]

BLAST of Csor.00g094380.m01 vs. NCBI nr
Match: XP_022982790.1 (reticulon-like protein B12 isoform X1 [Cucurbita maxima])

HSP 1 Score: 386 bits (991), Expect = 1.09e-133
Identity = 205/219 (93.61%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 34  FPFLLA----PASELSVSLGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 93
           FPFL      P+     S  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE
Sbjct: 11  FPFLSISTSLPSRLSENSKRQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 70

Query: 94  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 153
           RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN
Sbjct: 71  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 130

Query: 154 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 213
           DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED
Sbjct: 131 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 190

Query: 214 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 248
           YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS
Sbjct: 191 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 229

[Close]

BLAST of Csor.00g094380.m01 vs. NCBI nr
Match: XP_022982792.1 (reticulon-like protein B12 isoform X2 [Cucurbita maxima])

HSP 1 Score: 385 bits (988), Expect = 1.54e-133
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI
Sbjct: 11  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 70

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK
Sbjct: 71  IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 130

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL
Sbjct: 131 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 190

Query: 230 DEKRVLTYQQWILEKEKLS 248
           DEKRVLTYQQWILEKEKLS
Sbjct: 191 DEKRVLTYQQWILEKEKLS 209

[Close]

BLAST of Csor.00g094380.m01 vs. NCBI nr
Match: XP_022934140.1 (reticulon-like protein B12 isoform X2 [Cucurbita moschata] >XP_023527488.1 reticulon-like protein B12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384 bits (985), Expect = 4.40e-133
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI
Sbjct: 11  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 70

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK
Sbjct: 71  IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 130

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           VAACLW+ISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL
Sbjct: 131 VAACLWLISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 190

Query: 230 DEKRVLTYQQWILEKEKLS 248
           DEKRVLTYQQWILEKEKLS
Sbjct: 191 DEKRVLTYQQWILEKEKLS 209

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL
Match: A0A6J1F1Q2 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441402 PE=4 SV=1)

HSP 1 Score: 389 bits (998), Expect = 6.97e-135
Identity = 205/219 (93.61%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 34  FPFLLA----PASELSVSLGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 93
           FPFL      P+     S GQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE
Sbjct: 23  FPFLTISTSLPSGLSENSKGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 82

Query: 94  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 153
           RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN
Sbjct: 83  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 142

Query: 154 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 213
           DFLSVSQDIAMGKNPRLFFKVAACLW+ISVISGLTDLITLCYTSLLLVLTIPALYEKYED
Sbjct: 143 DFLSVSQDIAMGKNPRLFFKVAACLWLISVISGLTDLITLCYTSLLLVLTIPALYEKYED 202

Query: 214 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 248
           YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS
Sbjct: 203 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 241

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL
Match: A0A6J1J3U1 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111481548 PE=4 SV=1)

HSP 1 Score: 386 bits (991), Expect = 5.29e-134
Identity = 205/219 (93.61%), Postives = 206/219 (94.06%), Query Frame = 0


Query: 34  FPFLLA----PASELSVSLGQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 93
           FPFL      P+     S  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE
Sbjct: 11  FPFLSISTSLPSRLSENSKRQRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFE 70

Query: 94  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 153
           RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN
Sbjct: 71  RCGYTLLSLISSVLLLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVN 130

Query: 154 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 213
           DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED
Sbjct: 131 DFLSVSQDIAMGKNPRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYED 190

Query: 214 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 248
           YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS
Sbjct: 191 YVDRQVVLMYRKLHQFYVKLDEKRVLTYQQWILEKEKLS 229

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL
Match: A0A6J1IXI8 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111481548 PE=4 SV=1)

HSP 1 Score: 385 bits (988), Expect = 7.43e-134
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI
Sbjct: 11  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 70

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK
Sbjct: 71  IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 130

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL
Sbjct: 131 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 190

Query: 230 DEKRVLTYQQWILEKEKLS 248
           DEKRVLTYQQWILEKEKLS
Sbjct: 191 DEKRVLTYQQWILEKEKLS 209

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL
Match: A0A6J1F6U6 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441402 PE=4 SV=1)

HSP 1 Score: 384 bits (985), Expect = 2.13e-133
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI
Sbjct: 11  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 70

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK
Sbjct: 71  IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 130

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           VAACLW+ISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL
Sbjct: 131 VAACLWLISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 190

Query: 230 DEKRVLTYQQWILEKEKLS 248
           DEKRVLTYQQWILEKEKLS
Sbjct: 191 DEKRVLTYQQWILEKEKLS 209

[Close]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL
Match: A0A0A0LFE7 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G732580 PE=4 SV=1)

HSP 1 Score: 346 bits (887), Expect = 1.80e-118
Identity = 179/199 (89.95%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           QRTLHEIVGGGIVADVILWRRK+LT+ IL IT+ATW+VFERCGYTLLSLISSVLLLLVTI
Sbjct: 11  QRTLHEIVGGGIVADVILWRRKNLTMGILLITLATWLVFERCGYTLLSLISSVLLLLVTI 70

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           IFLWAKSASILNRPAPPLPEL+LSEDMVNEAASFIRS VN FLSV+QDIAMGK+PRLFFK
Sbjct: 71  IFLWAKSASILNRPAPPLPELYLSEDMVNEAASFIRSRVNAFLSVTQDIAMGKDPRLFFK 130

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           VAACLW+ISVISGLTD+ITL YTSLLLVLTIPALYEKYEDYVDR  +LMY+KL+QFYVKL
Sbjct: 131 VAACLWLISVISGLTDMITLAYTSLLLVLTIPALYEKYEDYVDRHAILMYKKLYQFYVKL 190

Query: 230 DEKRVLTYQQWILEKEKLS 248
           DE RVLTYQQWILEKEKLS
Sbjct: 191 DEMRVLTYQQWILEKEKLS 209

[Close]

BLAST of Csor.00g094380.m01 vs. TAIR 10
Match: AT3G54120.1 (Reticulon family protein )

HSP 1 Score: 199.9 bits (507), Expect = 2.4e-51
Identity = 97/180 (53.89%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 51  RTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTII 110
           RT+HEI+GGGIVADV+LWR+K++++ I+++T+A+W+VFE   YT+ +LISSVLLLL++I+
Sbjct: 13  RTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSIL 72

Query: 111 FLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFKV 170
           FLW+KSASILNRP+PPLPE  +SE M  EA+ ++R HVN  L VS DIAM ++  L+ KV
Sbjct: 73  FLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKV 132

Query: 171 AACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKLD 230
           A  L+++S+I  L D  TLC+TS+L+V+T+PA YE+YEDY+   +  +  K  + Y++L+
Sbjct: 133 AVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYIVGSIEFICNKTRELYLRLE 192

[Close]

BLAST of Csor.00g094380.m01 vs. TAIR 10
Match: AT3G19460.1 (Reticulon family protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-36
Identity = 77/172 (44.77%), Postives = 115/172 (66.86%), Query Frame = 0


Query: 45  SVSLGQR-TLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVL 104
           SVS   R ++H+ +G G VAD++LWR +   + +L  +   W +FER GY LLS +S+VL
Sbjct: 4   SVSSSSRVSVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVL 63

Query: 105 LLLVTIIFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKN 164
           LLLV I FLWAKSA++LNRP PP+P + + E+  N+AA  +R  +N  LS++ DI + +N
Sbjct: 64  LLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARN 123

Query: 165 PRLFFKVAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQV 216
           P    +V+  LW IS +  L + +TL Y  +LL L+ P +YEKY+D++D +V
Sbjct: 124 PIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEKV 175

[Close]

BLAST of Csor.00g094380.m01 vs. TAIR 10
Match: AT3G10915.2 (Reticulon family protein )

HSP 1 Score: 149.1 bits (375), Expect = 4.8e-36
Identity = 82/197 (41.62%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           Q T+H+ +GGG  AD++LWRR+ L+L ++ I+   W++FE  G   LS+ S VLL+++ I
Sbjct: 29  QITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMI 88

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
            F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +G + RLFFK
Sbjct: 89  SFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFK 148

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           V  CLW++S I     L TL Y   +L +TIPALY KY+  VD+    ++R+L   Y K+
Sbjct: 149 VVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHY-KI 208

Query: 230 DEKRVLTYQQWILEKEK 247
            ++ V++   W L K+K
Sbjct: 209 VDENVISRLSWSLSKDK 224

[Close]

BLAST of Csor.00g094380.m01 vs. TAIR 10
Match: AT3G10915.4 (Reticulon family protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-34
Identity = 82/198 (41.41%), Postives = 125/198 (63.13%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           Q T+H+ +GGG  AD++LWRR+ L+L ++ I+   W++FE  G   LS+ S VLL+++ I
Sbjct: 29  QITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMI 88

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
            F+ A+ ++  NR    LPEL LSE+MVN AA+  R  +N  L ++ D+ +G + RLFFK
Sbjct: 89  SFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFK 148

Query: 170 -VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVK 229
            V  CLW++S I     L TL Y   +L +TIPALY KY+  VD+    ++R+L   Y K
Sbjct: 149 QVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHY-K 208

Query: 230 LDEKRVLTYQQWILEKEK 247
           + ++ V++   W L K+K
Sbjct: 209 IVDENVISRLSWSLSKDK 225

[Close]

BLAST of Csor.00g094380.m01 vs. TAIR 10
Match: AT2G15280.1 (Reticulon family protein )

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-32
Identity = 67/183 (36.61%), Postives = 113/183 (61.75%), Query Frame = 0


Query: 50  QRTLHEIVGGGIVADVILWRRKDLTLWILSITVATWVVFERCGYTLLSLISSVLLLLVTI 109
           + ++H+ +  G VAD+I+W+ +     +L  T   W +FE+CGY+    + +  LL V I
Sbjct: 2   EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query: 110 IFLWAKSASILNRPAPPLPELHLSEDMVNEAASFIRSHVNDFLSVSQDIAMGKNPRLFFK 169
           +FLWAKSA + NRP P LP L ++E+ V   A  IR  +N  L+V+++I +G+N +  F+
Sbjct: 62  LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query: 170 VAACLWVISVISGLTDLITLCYTSLLLVLTIPALYEKYEDYVDRQVVLMYRKLHQFYVKL 229
           V+  LW +S +    + +T+ Y  ++L L IP LYE+Y+D +D ++ L +R +   Y K+
Sbjct: 122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKI 181

Query: 230 DEK 233
           DE+
Sbjct: 182 DER 184

The following BLAST results are available for this feature:

BLAST of Csor.00g094380.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M392	3.4e-50	53.89	Reticulon-like protein B12 OS=Arabidopsis thaliana OX=3702 GN=RTNLB12 PE=2 SV=1	[more]
Q9LT71	1.8e-35	44.77	Reticulon-like protein B11 OS=Arabidopsis thaliana OX=3702 GN=RTNLB11 PE=2 SV=1	[more]
Q8GYH6	6.8e-35	41.62	Reticulon-like protein B16 OS=Arabidopsis thaliana OX=3702 GN=RTNLB16 PE=2 SV=1	[more]
Q6NPD8	3.5e-31	36.61	Reticulon-like protein B10 OS=Arabidopsis thaliana OX=3702 GN=RTNLB10 PE=2 SV=1	[more]
Q9FFS0	3.3e-29	36.61	Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1	[more]

BLAST of Csor.00g094380.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580494.1	3.90e-168	100.00	Reticulon-like protein B12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022934139.1	1.44e-134	93.61	reticulon-like protein B12 isoform X1 [Cucurbita moschata]	[more]
XP_022982790.1	1.09e-133	93.61	reticulon-like protein B12 isoform X1 [Cucurbita maxima]	[more]
XP_022982792.1	1.54e-133	100.00	reticulon-like protein B12 isoform X2 [Cucurbita maxima]	[more]
XP_022934140.1	4.40e-133	99.50	reticulon-like protein B12 isoform X2 [Cucurbita moschata] >XP_023527488.1 retic...	[more]

BLAST of Csor.00g094380.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1Q2	6.97e-135	93.61	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441402 PE=4 SV=1	[more]
A0A6J1J3U1	5.29e-134	93.61	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111481548 PE=4 SV=1	[more]
A0A6J1IXI8	7.43e-134	100.00	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111481548 PE=4 SV=1	[more]
A0A6J1F6U6	2.13e-133	99.50	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441402 PE=4 SV=1	[more]
A0A0A0LFE7	1.80e-118	89.95	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G732580 PE=4 SV=1	[more]

BLAST of Csor.00g094380.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54120.1	2.4e-51	53.89	Reticulon family protein	[more]
AT3G19460.1	1.3e-36	44.77	Reticulon family protein	[more]
AT3G10915.2	4.8e-36	41.62	Reticulon family protein	[more]
AT3G10915.4	1.2e-34	41.41	Reticulon family protein	[more]
AT2G15280.1	2.5e-32	36.61	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 62..215 e-value: 1.0E-48 score: 165.2
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 62..248 score: 31.818214
None	No IPR available	PANTHER	PTHR10994:SF65	RETICULON-LIKE PROTEIN B12	coord: 27..246
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 27..246

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g094380	Csor.00g094380	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.CDS01	Csor.00g094380.m01.CDS01	CDS
Csor.00g094380.m01.CDS02	Csor.00g094380.m01.CDS02	CDS
Csor.00g094380.m01.CDS03	Csor.00g094380.m01.CDS03	CDS
Csor.00g094380.m01.CDS04	Csor.00g094380.m01.CDS04	CDS
Csor.00g094380.m01.CDS05	Csor.00g094380.m01.CDS05	CDS
Csor.00g094380.m01.CDS06	Csor.00g094380.m01.CDS06	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.start_codon01	Csor.00g094380.m01.start_codon01	start_codon

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.initial01	Csor.00g094380.m01.initial01	initial

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.intron01	Csor.00g094380.m01.intron01	intron
Csor.00g094380.m01.intron02	Csor.00g094380.m01.intron02	intron
Csor.00g094380.m01.intron03	Csor.00g094380.m01.intron03	intron
Csor.00g094380.m01.intron04	Csor.00g094380.m01.intron04	intron
Csor.00g094380.m01.intron05	Csor.00g094380.m01.intron05	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.internal01	Csor.00g094380.m01.internal01	internal
Csor.00g094380.m01.internal02	Csor.00g094380.m01.internal02	internal
Csor.00g094380.m01.internal03	Csor.00g094380.m01.internal03	internal
Csor.00g094380.m01.internal04	Csor.00g094380.m01.internal04	internal

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.terminal01	Csor.00g094380.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01.stop_codon01	Csor.00g094380.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g094380.m01	Csor.00g094380.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane